Guide to the Human Genome
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Name: PEX11G Sequence: fasta or formatted (241aa) NCBI GI: 18087833
Description:

peroxisomal biogenesis factor 11 gamma

Referenced in:

Peroxisomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         27           2
 C cysteine            2.5          6           2
 D aspartate           3.3          8           2
 E glutamate           3.7          9           2
 F phenylalanine       2.1          5           1
 G glycine             7.1         17           2
 H histidine           1.7          4           1
 I isoleucine          1.7          4           1
 K lysine              1.2          3           1
 L leucine            16.6         40           3
 M methionine          2.9          7           1
 N asparagine          1.2          3           1
 P proline             4.1         10           2
 Q glutamine           4.6         11           1
 R arginine            8.7         21           2
 S serine              8.7         21           2
 T threonine           5.0         12           2
 V valine              7.5         18           2
 W tryptophan          3.3          8           2
 Y tyrosine            2.9          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peroxisomal biogenesis factor 11 gamma 
PEX11B                0.061   peroxisomal biogenesis factor 11 beta 
PEX11A                0.057   peroxisomal biogenesis factor 11 alpha 
LOC727847             0.011   PREDICTED: similar to hCG1984643 
LOC727847             0.011   PREDICTED: similar to hCG1984643 
LOC727847             0.009   PREDICTED: similar to hCG1984643 
FUT4                  0.007   fucosyltransferase 4 
HFE                   0.007   hemochromatosis protein isoform 4 precursor 
LOC100292936          0.007   PREDICTED: hypothetical protein 
LOC100290616          0.007   PREDICTED: hypothetical protein XP_002347245 
LOC100288128          0.007   PREDICTED: hypothetical protein XP_002343110 
MAPK7                 0.007   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.007   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.007   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.007   mitogen-activated protein kinase 7 isoform 2 
TOM1                  0.007   target of myb1 isoform 2 
TOM1                  0.007   target of myb1 isoform 4 
TOM1                  0.007   target of myb1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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