Search of human proteins with 17402912

Search of human proteins with 17402912

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|17402912 vacuolar protein sorting 29 isoform 2 [Homo
sapiens]
         (186 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17402912 vacuolar protein sorting 29 isoform 2 [Homo sapiens]      383   e-107
gi|7706441 vacuolar protein sorting 29 isoform 1 [Homo sapiens]       372   e-103
gi|223005862 echinoderm microtubule associated protein like 6 [H...    29   2.0  
gi|210031210 transmembrane protein with metallophosphoesterase d...    28   3.5  
gi|210031196 transmembrane protein with metallophosphoesterase d...    28   3.5  
gi|118572606 hemicentin 1 [Homo sapiens]                               28   4.6  
gi|110346438 FERM and PDZ domain containing 2 isoform 1 [Homo sa...    28   5.9  
gi|110346436 FERM and PDZ domain containing 2 isoform 3 [Homo sa...    28   5.9  
gi|194353966 dynein, axonemal, heavy polypeptide 6 [Homo sapiens]      27   7.8  

>gi|17402912 vacuolar protein sorting 29 isoform 2 [Homo sapiens]
          Length = 186

 Score =  383 bits (983), Expect = e-107
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDV 60
           MAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDV
Sbjct: 1   MAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDV 60

Query: 61  HIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHT 120
           HIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHT
Sbjct: 61  HIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHT 120

Query: 121 HKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVER 180
           HKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVER
Sbjct: 121 HKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVER 180

Query: 181 IEYKKP 186
           IEYKKP
Sbjct: 181 IEYKKP 186


>gi|7706441 vacuolar protein sorting 29 isoform 1 [Homo sapiens]
          Length = 182

 Score =  372 bits (955), Expect = e-103
 Identities = 181/181 (100%), Positives = 181/181 (100%)

Query: 6   LVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRG 65
           LVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRG
Sbjct: 2   LVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRG 61

Query: 66  DFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEA 125
           DFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEA
Sbjct: 62  DFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEA 121

Query: 126 FEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKK 185
           FEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKK
Sbjct: 122 FEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKK 181

Query: 186 P 186
           P
Sbjct: 182 P 182


>gi|223005862 echinoderm microtubule associated protein like 6 [Homo
           sapiens]
          Length = 1958

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 20  NSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRG 65
           N+L AK       G +Q ILC    C KE   Y   L GD+++ +G
Sbjct: 182 NALTAKRGIFGKTGDLQTILCLA--CAKEDITYSGALNGDIYVWKG 225


>gi|210031210 transmembrane protein with metallophosphoesterase
           domain isoform 2 [Homo sapiens]
          Length = 316

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 100 MASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNII 151
           +A+   LQ + D+++++SGHTH  + F      Y+      G Y   +   +
Sbjct: 235 LAAKRALQARPDINLILSGHTHAGQIFPLNVAAYLLNPFFAGLYQVAQATFV 286


>gi|210031196 transmembrane protein with metallophosphoesterase
           domain isoform 1 [Homo sapiens]
          Length = 453

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 100 MASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNII 151
           +A+   LQ + D+++++SGHTH  + F      Y+      G Y   +   +
Sbjct: 372 LAAKRALQARPDINLILSGHTHAGQIFPLNVAAYLLNPFFAGLYQVAQATFV 423


>gi|118572606 hemicentin 1 [Homo sapiens]
          Length = 5635

 Score = 28.1 bits (61), Expect = 4.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 17   HRCNSLPAKFKKLLVPGKIQHILCTGNLC 45
            H+C++ P  FK +  PG  QH+L  G  C
Sbjct: 5328 HQCSNTPGSFKCICPPG--QHLLGDGKSC 5354


>gi|110346438 FERM and PDZ domain containing 2 isoform 1 [Homo
           sapiens]
          Length = 1287

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 97  WGDMASLALLQRQFDVDILISGHTHKFEAFEHE-NKFYINPGSATGAYNALETNIIPSFV 155
           W +   ++  Q++F +   ++G  H F     + +K+ ++  SA   +NA   +  PS V
Sbjct: 568 WRETGKISTYQKKFTITSSVTGKKHTFVTDSAKTSKYLLDLCSAQHGFNAQMGSGQPSHV 627

Query: 156 LMD 158
           L D
Sbjct: 628 LFD 630


>gi|110346436 FERM and PDZ domain containing 2 isoform 3 [Homo
           sapiens]
          Length = 1309

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 97  WGDMASLALLQRQFDVDILISGHTHKFEAFEHE-NKFYINPGSATGAYNALETNIIPSFV 155
           W +   ++  Q++F +   ++G  H F     + +K+ ++  SA   +NA   +  PS V
Sbjct: 590 WRETGKISTYQKKFTITSSVTGKKHTFVTDSAKTSKYLLDLCSAQHGFNAQMGSGQPSHV 649

Query: 156 LMD 158
           L D
Sbjct: 650 LFD 652


>gi|194353966 dynein, axonemal, heavy polypeptide 6 [Homo sapiens]
          Length = 4158

 Score = 27.3 bits (59), Expect = 7.8
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 117  SGHTHKFEAFEHENKFYINPGSAT--GAYNALETNIIPSFVLMDIQASTVVTYVYQLIGD 174
            S H    + FE  N   +N  +A   G+   L  NI+ + + +D+ A  +VT + Q    
Sbjct: 1342 SNHIQALKNFEKVNFERLNALAAIVQGSLPKLHRNILTALITIDVHARDIVTELVQ---- 1397

Query: 175  DVKVERIE 182
              KVE +E
Sbjct: 1398 -SKVETVE 1404


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,889,038
Number of Sequences: 37866
Number of extensions: 278088
Number of successful extensions: 453
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 9
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.