Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KCTD17 Sequence: fasta or formatted (297aa) NCBI GI: 169234778
Description:

potassium channel tetramerisation domain containing 17

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         20           2
 C cysteine            2.7          8           2
 D aspartate           4.0         12           1
 E glutamate          12.8         38           3
 F phenylalanine       2.4          7           1
 G glycine             7.7         23           2
 H histidine           2.0          6           1
 I isoleucine          2.7          8           2
 K lysine              4.0         12           1
 L leucine             8.4         25           1
 M methionine          2.4          7           1
 N asparagine          2.0          6           1
 P proline             7.1         21           2
 Q glutamine           7.1         21           4
 R arginine            6.7         20           1
 S serine              6.1         18           2
 T threonine           4.7         14           2
 V valine              6.7         20           2
 W tryptophan          1.0          3           1
 Y tyrosine            2.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium channel tetramerisation domain containing... 
KCTD5                 0.479   potassium channel tetramerisation domain containing 5...
KCTD2                 0.449   potassium channel tetramerisation domain containing ...
KCTD3                 0.105   potassium channel tetramerisation domain containing ...
KCTD9                 0.101   potassium channel tetramerisation domain containing ...
SHKBP1                0.099   SH3KBP1 binding protein 1 
LOC647013             0.087   PREDICTED: similar to potassium channel tetramerisa...
LOC647013             0.087   PREDICTED: similar to potassium channel tetramerisa...
LOC647013             0.087   PREDICTED: similar to potassium channel tetramerisa...
KCTD4                 0.075   potassium channel tetramerisation domain containing...
KCTD6                 0.074   potassium channel tetramerisation domain containing...
KCTD6                 0.074   potassium channel tetramerisation domain containing...
KCTD21                0.067   potassium channel tetramerisation domain containing ...
KCTD10                0.063   potassium channel tetramerisation domain containing ...
KCTD7                 0.063   potassium channel tetramerisation domain containing ...
TNFAIP1               0.060   tumor necrosis factor, alpha-induced protein 1 [Homo...
KCTD13                0.058   potassium channel tetramerisation domain containing ...
KCTD14                0.055   potassium channel tetramerisation domain containing...
KCTD15                0.053   potassium channel tetramerisation domain containing...
KCTD15                0.053   potassium channel tetramerisation domain containing...
KCTD15                0.053   potassium channel tetramerisation domain containing...
KCTD12                0.050   potassium channel tetramerisation domain containing ...
KCTD18                0.048   potassium channel tetramerization domain containing ...
KCTD16                0.048   potassium channel tetramerisation domain containing ...
KCTD8                 0.046   potassium channel tetramerisation domain containing ...
KCTD1                 0.043   potassium channel tetramerisation domain containing...
KCTD1                 0.043   potassium channel tetramerisation domain containing...
KCTD1                 0.043   potassium channel tetramerisation domain containing ...
KCNG4                 0.043   potassium voltage-gated channel, subfamily G, member...
KCNRG                 0.038   potassium channel regulator isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press