Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169218303
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169218303 PREDICTED: hypothetical protein [Homo sapiens]
(421 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169218303 PREDICTED: hypothetical protein [Homo sapiens] 923 0.0
gi|55925576 insulin-like growth factor binding protein 2, 36kDa ... 40 0.005
gi|122891874 keratin associated protein 5-5 [Homo sapiens] 39 0.012
gi|51972220 keratin associated protein 5-2 [Homo sapiens] 36 0.075
gi|54400749 keratin associated protein 5-1 [Homo sapiens] 35 0.098
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 35 0.13
gi|18152779 scavenger receptor cysteine rich domain containing, ... 35 0.17
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 34 0.22
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 33 0.37
gi|60593040 keratin associated protein 5-10 [Homo sapiens] 33 0.49
gi|61966761 leucine rich repeat containing 26 [Homo sapiens] 31 1.8
gi|60279697 keratin associated protein 5-7 [Homo sapiens] 31 1.8
gi|239750916 PREDICTED: similar to hCG1803335 [Homo sapiens] 31 2.4
gi|239754979 PREDICTED: hypothetical protein [Homo sapiens] 30 3.1
gi|239745314 PREDICTED: similar to hCG1803335 [Homo sapiens] 30 3.1
gi|14192943 multiple EGF-like-domains 10 [Homo sapiens] 30 4.1
gi|5016090 nuclear receptor subfamily 0, group B, member 1 [Homo... 30 5.4
gi|222136641 NIMA-related kinase 9 [Homo sapiens] 30 5.4
gi|38490568 keratin associated protein 10-4 [Homo sapiens] 30 5.4
gi|60593036 keratin associated protein 5-3 [Homo sapiens] 29 7.0
gi|239750349 PREDICTED: hypothetical protein XP_002347377 [Homo ... 29 9.2
gi|239744653 PREDICTED: hypothetical protein XP_002343215 [Homo ... 29 9.2
gi|23463326 POU domain class 5, transcription factor 2 [Homo sap... 29 9.2
>gi|169218303 PREDICTED: hypothetical protein [Homo sapiens]
Length = 421
Score = 923 bits (2385), Expect = 0.0
Identities = 421/421 (100%), Positives = 421/421 (100%)
Query: 1 MSDAQLWVSVLLQAVGCSPGVVGAAPGCPMLTWGCGCCSRPSDARLLSDAHLWVWVLLQT 60
MSDAQLWVSVLLQAVGCSPGVVGAAPGCPMLTWGCGCCSRPSDARLLSDAHLWVWVLLQT
Sbjct: 1 MSDAQLWVSVLLQAVGCSPGVVGAAPGCPMLTWGCGCCSRPSDARLLSDAHLWVWVLLQT 60
Query: 61 IRCAPAGVGADPGCQMLAWGCGCRSRPSDARLGVWVLFQAVGCSPGVWVLLQAVGCSPGG 120
IRCAPAGVGADPGCQMLAWGCGCRSRPSDARLGVWVLFQAVGCSPGVWVLLQAVGCSPGG
Sbjct: 61 IRCAPAGVGADPGCQMLAWGCGCRSRPSDARLGVWVLFQAVGCSPGVWVLLQAVGCSPGG 120
Query: 121 EDAIPCGQMLTWGYGFCSRLSDAHLGVWELFQDIGCSPVGVGAVPGHQMLAWVSGCCSRL 180
EDAIPCGQMLTWGYGFCSRLSDAHLGVWELFQDIGCSPVGVGAVPGHQMLAWVSGCCSRL
Sbjct: 121 EDAIPCGQMLTWGYGFCSRLSDAHLGVWELFQDIGCSPVGVGAVPGHQMLAWVSGCCSRL 180
Query: 181 SRAHLREQTAVPGSQILIWVYGCCSRISDAHLGVWVLLQAVGCSPGGVGAVPGCWMLIWG 240
SRAHLREQTAVPGSQILIWVYGCCSRISDAHLGVWVLLQAVGCSPGGVGAVPGCWMLIWG
Sbjct: 181 SRAHLREQTAVPGSQILIWVYGCCSRISDAHLGVWVLLQAVGCSPGGVGAVPGCWMLIWG 240
Query: 241 CGCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHLGVWVLFQAVRCSPVGVGAASG 300
CGCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHLGVWVLFQAVRCSPVGVGAASG
Sbjct: 241 CGCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHLGVWVLFQAVRCSPVGVGAASG 300
Query: 301 CQMLTWSVGAAPGCQMLAWGCGCCSRLSDAHLGVWVLLQALRCSPGCVGAIPGYQMLTWG 360
CQMLTWSVGAAPGCQMLAWGCGCCSRLSDAHLGVWVLLQALRCSPGCVGAIPGYQMLTWG
Sbjct: 301 CQMLTWSVGAAPGCQMLAWGCGCCSRLSDAHLGVWVLLQALRCSPGCVGAIPGYQMLTWG 360
Query: 361 CGSCSRLSDAHFGVQGPVPGCQMLTWGCGCSSRLSDAHLLVWVLLQAVRCSPRVWVLLQA 420
CGSCSRLSDAHFGVQGPVPGCQMLTWGCGCSSRLSDAHLLVWVLLQAVRCSPRVWVLLQA
Sbjct: 361 CGSCSRLSDAHFGVQGPVPGCQMLTWGCGCSSRLSDAHLLVWVLLQAVRCSPRVWVLLQA 420
Query: 421 V 421
V
Sbjct: 421 V 421
>gi|55925576 insulin-like growth factor binding protein 2, 36kDa
[Homo sapiens]
Length = 328
Score = 39.7 bits (91), Expect = 0.005
Identities = 35/104 (33%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 283 VLFQAVRCSPVGVGA------ASGCQMLTWSVGAAPGCQMLAW--GCGCCS---RLSDAH 331
VLF+ C+P + A A + + GA C L GCGCCS RL
Sbjct: 41 VLFRCPPCTPERLAACGPPPVAPPAAVAAVAGGARMPCAELVREPGCGCCSVCARLEGEA 100
Query: 332 LGVWV--LLQALRCSPGCVGAIPGYQMLTWGCGSCSRLSDAHFG 373
GV+ Q LRC P +P Q L G G+C + DA +G
Sbjct: 101 CGVYTPRCGQGLRCYPHPGSELP-LQALVMGEGTCEKRRDAEYG 143
>gi|122891874 keratin associated protein 5-5 [Homo sapiens]
Length = 237
Score = 38.5 bits (88), Expect = 0.012
Identities = 43/159 (27%), Positives = 51/159 (32%), Gaps = 27/159 (16%)
Query: 222 GCSPGGVGAVPGCWMLIWGCGCCSRLSDAHLGVQGAVPGCQMLTWGCE-------SCSRL 274
GC G G GC GCG C G G GC + C+ +CS
Sbjct: 23 GCGSGCGGCGSGCGGCGSGCGGCGGCGSGCAGCGGCGSGCCVPVCCCKPMCCCVPACSCS 82
Query: 275 SDAHLGVWVLFQAVR-CSPVGV---------GAASGCQMLTWSVGAAPGCQMLAWGCGCC 324
S G + R C GV G+ GC S G C GCG C
Sbjct: 83 SCGKGGCGSCGGSKRGCVSCGVSKGACGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSC 142
Query: 325 SRLSDAHLGVWVLLQALRCSPGCVGAIPGYQMLTWGCGS 363
S G + Q+ C P C + GCGS
Sbjct: 143 GG-SKGGCGSYGCSQSSCCKPCCCSS---------GCGS 171
Score = 33.5 bits (75), Expect = 0.37
Identities = 47/182 (25%), Positives = 53/182 (29%), Gaps = 43/182 (23%)
Query: 222 GCSPGGVGAVPGCWMLIWGCGCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHL-- 279
GC G G GC GCG C G GC GC C +
Sbjct: 9 GCGSGCGGRGSGCGGCGSGCGGCGSGCGGCGSGCGGCGGCGSGCAGCGGCGSGCCVPVCC 68
Query: 280 --GVWVLFQAVRCSPVGVGAAS-------GCQMLTWSVGAAPGCQMLAWGCGCCSRLSDA 330
+ A CS G G GC S GA C GCG C
Sbjct: 69 CKPMCCCVPACSCSSCGKGGCGSCGGSKRGCVSCGVSKGACGSCGGSKGGCGSCGG---- 124
Query: 331 HLGVWVLLQALRCSPGCVGAIPGYQMLTWGCGSCSRLSDAHFGVQGPVPGCQMLTWGCGC 390
S G G+ G + GCGSC G GC ++GC
Sbjct: 125 -------------SKGGCGSCGGSK---GGCGSCG----------GSKGGCG--SYGCSQ 156
Query: 391 SS 392
SS
Sbjct: 157 SS 158
Score = 32.7 bits (73), Expect = 0.63
Identities = 42/151 (27%), Positives = 46/151 (30%), Gaps = 35/151 (23%)
Query: 242 GCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHLGVWVLFQAVRCSPVGVGAASGC 301
GCC G G GC GC C S G G SGC
Sbjct: 2 GCCGCSGGCGSGCGGRGSGCGGCGSGCGGCG------------------SGCG-GCGSGC 42
Query: 302 QMLTWSVGAAPGCQMLAWGCGCCSRLSDAHLGVWVLLQALRCSPGCVGAIPGYQMLTWGC 361
G GC GCG C S + V C P C + G GC
Sbjct: 43 -------GGCGGCGSGCAGCGGCG--SGCCVPVCCCKPMCCCVPACSCSSCG----KGGC 89
Query: 362 GSC--SRLSDAHFGV-QGPVPGCQMLTWGCG 389
GSC S+ GV +G C GCG
Sbjct: 90 GSCGGSKRGCVSCGVSKGACGSCGGSKGGCG 120
>gi|51972220 keratin associated protein 5-2 [Homo sapiens]
Length = 177
Score = 35.8 bits (81), Expect = 0.075
Identities = 40/153 (26%), Positives = 45/153 (29%), Gaps = 38/153 (24%)
Query: 222 GCSPGGVGAVPGCWMLIWGCGC-CSRLSDAHLGVQGAVPGCQMLTWGCES--------CS 272
GCS G GC GCG C G GC GC S C
Sbjct: 5 GCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPVCCCK 64
Query: 273 RLSDAHLGVWVLFQAVRCSPVGV--GAASGCQMLTWSVGAAPGCQMLAWGCGCCSRLSDA 330
+ WV A C+ G G+ GC S G C GCG C
Sbjct: 65 PVCS-----WV--PACSCTSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCG----- 112
Query: 331 HLGVWVLLQALRCSPGCVGAIPGYQMLTWGCGS 363
Q+ C P C + GCGS
Sbjct: 113 ------CSQSSCCKPCCCSS---------GCGS 130
>gi|54400749 keratin associated protein 5-1 [Homo sapiens]
Length = 278
Score = 35.4 bits (80), Expect = 0.098
Identities = 48/189 (25%), Positives = 52/189 (27%), Gaps = 52/189 (27%)
Query: 223 CSPGGVGAVPG-----------------CWMLIWGCGCCSRLSDAHLGVQGAVPGCQMLT 265
C GG G+ G C GCG C G+ GC
Sbjct: 64 CGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSGC 123
Query: 266 WGC-ESCSRLSDAHLGVWVLFQAVRCSPVGVGAASGCQMLTWSVGAAPGCQMLAWGCGCC 324
GC SC + A CS G G GC S GA C GCG C
Sbjct: 124 GGCGSSCCVPVCCCKPMCCCVPACSCSSCGKG---GCGSCGCSKGACGSCGGSKGGCGSC 180
Query: 325 SRLSDAHLGVWVLLQALRCSPGCVGAIPGYQMLTWGCGSC-SRLSDAHFGVQGPVPGCQM 383
GC G GCGSC G G GC +
Sbjct: 181 G--------------------GCKG----------GCGSCGGSKGGCGSGCGGCGSGCGV 210
Query: 384 LTWGCGCSS 392
C CSS
Sbjct: 211 PVCCCSCSS 219
Score = 31.6 bits (70), Expect = 1.4
Identities = 43/171 (25%), Positives = 48/171 (28%), Gaps = 47/171 (27%)
Query: 222 GCSPGGVGAVPGCWMLIWGCGCCSRLSDAHLGVQGAVPGCQMLTWGCES-CSRLSDAHLG 280
GCS G + GC GCG S G G+ C + C+ C R+
Sbjct: 5 GCSGGCGSSCGGCGSGCGGCG--SGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCS-- 60
Query: 281 VWVLFQAVRCSPVGVGAASGCQMLTWSVGAAPGCQMLAWGCGCCSRLSDAHLGVWVLLQA 340
CS G G GC S G C GCG C
Sbjct: 61 ---------CSSCGKG---GCGSSGGSKGGCGSCGGCKGGCGSCG--------------- 93
Query: 341 LRCSPGCVGAIPGYQMLTWGCGSCSRLSDAHFGVQGPVPGCQMLTWGCGCS 391
G G GCGSC G GC GCG S
Sbjct: 94 -----GSKG----------GCGSCGGSKGGCGSCGGSKGGCGSGCGGCGSS 129
Score = 29.6 bits (65), Expect = 5.4
Identities = 30/106 (28%), Positives = 32/106 (30%), Gaps = 12/106 (11%)
Query: 220 AVGCSPGGVGAVPGCWMLIWGCGCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHL 279
A CS G G C CG C G +G C GC SC S
Sbjct: 146 ACSCSSCGKGGCGSCGCSKGACGSCG-------GSKGGCGSCGGCKGGCGSCGG-SKGGC 197
Query: 280 GVWVLFQAVRCS-PVGVGAASGCQMLTWSVGAAPGCQMLAWGCGCC 324
G C PV + S C S G GC C CC
Sbjct: 198 GSGCGGCGSGCGVPVCCCSCSSCGSCAGSKG---GCGSSCSQCSCC 240
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 35.0 bits (79), Expect = 0.13
Identities = 24/88 (27%), Positives = 28/88 (31%), Gaps = 15/88 (17%)
Query: 17 CSPGVVGAAPGCPMLTWGCGCCSRPSDARLLSDAHLWVWVLLQTIRCAPAGVGADPGCQM 76
C+PG G G GC R D R + C P G D G +
Sbjct: 297 CNPGYTGEDCGVRSCPRGCSQRGRCKDGRCV---------------CDPGYTGEDCGTRS 341
Query: 77 LAWGCGCRSRPSDARLGVWVLFQAVGCS 104
W CG R D R W + CS
Sbjct: 342 CPWDCGEGGRCVDGRCVCWPGYTGEDCS 369
Score = 33.5 bits (75), Expect = 0.37
Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 343 CSPGCVGAIPGYQMLTWGCGSCSRLSDAHF----GVQGPVPGCQMLTWGCGCSSRLSDAH 398
C+PG G G + GC R D G G G + W CG R D
Sbjct: 297 CNPGYTGEDCGVRSCPRGCSQRGRCKDGRCVCDPGYTGEDCGTRSCPWDCGEGGRCVDGR 356
Query: 399 LLVWVLLQAVRCSPR 413
+ W CS R
Sbjct: 357 CVCWPGYTGEDCSTR 371
>gi|18152779 scavenger receptor cysteine rich domain containing,
group B (4 domains) [Homo sapiens]
Length = 575
Score = 34.7 bits (78), Expect = 0.17
Identities = 76/343 (22%), Positives = 100/343 (29%), Gaps = 98/343 (28%)
Query: 10 VLLQAVGCSPGVVGAAPGCPMLTWGCGCCSRPSDARLLSDAHLWVWV---LLQTIRCAPA 66
+LL V C G A C WG C D +L D L + T R P
Sbjct: 120 ILLDNVECR-GQEAALSECGSRGWGVHNCFHYEDVAVLCDEFLPTQPPTRKMLTSRAPPT 178
Query: 67 GV--GADPGCQMLAWGCG-CRSRPSDARLGVW--------------VLFQAVGCSPGV-- 107
+ G G L G C+ R G+W V+ + +GC +
Sbjct: 179 TLPNGKSEGSVRLVGGANLCQGRVEILHSGLWGTVCDDDWGLPDAAVVCRQLGCGAAMAA 238
Query: 108 -----------WVLLQAVGCSPGGEDAIPCGQMLTWGYGFCSRLSD-----AHLGV---- 147
+LL V C GGE + Q L WG C D A LG
Sbjct: 239 TTNAFFGYGTGHILLDNVHCE-GGEPRLAACQSLGWGVHNCGHHEDAGALCAGLGPPTLT 297
Query: 148 ----------WELFQDIGCSPVGVGAVPGHQMLAWVSGCCSRLSRAHLREQTAVPGSQIL 197
W D S GVG P + + + ++ PG
Sbjct: 298 ALPSSATREDWAWQTD--PSATGVGPQPSRETALLTTAAWAAGKKSGRLRLVGGPGP--- 352
Query: 198 IWVYGCCSRISDAHLGVW--------------VLLQAVGCSPG---------GVGAVPGC 234
C R+ H G W V + GC P G G P
Sbjct: 353 -----CRGRVEVLHAGGWGTVCDDDWDFADARVACREAGCGPALGATGLGHFGYGRGP-- 405
Query: 235 WMLIWGCGCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDA 277
+L+ GC G + + C L WG +C DA
Sbjct: 406 -VLLDNVGCA--------GTEARLSDCFHLGWGQHNCGHHEDA 439
Score = 34.7 bits (78), Expect = 0.17
Identities = 63/239 (26%), Positives = 81/239 (33%), Gaps = 47/239 (19%)
Query: 203 CCSRISDAHLGVWVLL---------QAVGCSPGGVGAVPGCWM-LIWGCGCCSRLSDAHL 252
C R+ H G+W + AV C G GA +G G L D ++
Sbjct: 198 CQGRVEILHSGLWGTVCDDDWGLPDAAVVCRQLGCGAAMAATTNAFFGYGTGHILLD-NV 256
Query: 253 GVQGAVP---GCQMLTWGCESCSRLSD-----AHLGV--------------WVLFQAVRC 290
+G P CQ L WG +C D A LG W
Sbjct: 257 HCEGGEPRLAACQSLGWGVHNCGHHEDAGALCAGLGPPTLTALPSSATREDWAWQTDPSA 316
Query: 291 SPVGVGAASGCQMLT---WSVGAAPGCQMLAWGCG-CCSRLSDAHLGVWVLLQALRCSPG 346
+ VG + +LT W+ G G L G G C R+ H G W + C
Sbjct: 317 TGVGPQPSRETALLTTAAWAAGKKSGRLRLVGGPGPCRGRVEVLHAGGWGTV----CDDD 372
Query: 347 CVGAIPGYQMLTWGCG-SCSRLSDAHFGV-QGPVPGCQMLTWGC-GCSSRLSDAHLLVW 402
A GCG + HFG +GPV + GC G +RLSD L W
Sbjct: 373 WDFADARVACREAGCGPALGATGLGHFGYGRGPV---LLDNVGCAGTEARLSDCFHLGW 428
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 34.3 bits (77), Expect = 0.22
Identities = 43/170 (25%), Positives = 47/170 (27%), Gaps = 54/170 (31%)
Query: 222 GCSPGGVGAVPGCWMLIWGCGCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHLGV 281
G G G C GCG C G +G C GC SC
Sbjct: 82 GSCGGSKGGCVSCGGSKGGCGSCG-------GSKGGCGSCGGSKGGCGSCGGSKGG---- 130
Query: 282 WVLFQAVRCSPVGVGAASGCQMLTWSVGAAPGCQMLAWGCGCCSRLSDAHLGVWVLLQAL 341
V C G+ GC S G C GCG C
Sbjct: 131 -----CVSCG----GSKGGCGSCGGSKGGCVSCGGSKGGCGSCGG--------------- 166
Query: 342 RCSPGCVGAIPGYQMLTWGCGSCSRLSDAHFGVQGPVPGCQMLTWGCGCS 391
S G G+ G + GCGSC G GC CGCS
Sbjct: 167 --SKGGCGSCGGSK---GGCGSCG----------GSKGGC----GSCGCS 197
Score = 33.9 bits (76), Expect = 0.28
Identities = 52/186 (27%), Positives = 56/186 (30%), Gaps = 46/186 (24%)
Query: 222 GCSPGGVGAVPGCWMLIWGCGCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHL-- 279
GCS GG G+ GC GCG C G G GC GC C +
Sbjct: 5 GCS-GGCGS--GCGGCGSGCGGCGS------GCGGCGSGCGGCGSGCGGCGSSCCVPICC 55
Query: 280 --GVWVLFQAVRCSPVGV------------GAASGCQMLTWSVGAAPGCQMLAWGCGCCS 325
V A CS G G+ GC S G C GCG C
Sbjct: 56 CKPVCCCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCG 115
Query: 326 RLSDAHLGVWVLLQALRCSPGCV--GAIPGYQMLTWGCGSCSRLSDAHFGVQGPVPGCQM 383
S G GCV G G GCGSC G +G C
Sbjct: 116 G-SKGGCG-----SCGGSKGGCVSCGGSKG------GCGSCG-------GSKGGCVSCGG 156
Query: 384 LTWGCG 389
GCG
Sbjct: 157 SKGGCG 162
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 33.5 bits (75), Expect = 0.37
Identities = 55/210 (26%), Positives = 66/210 (31%), Gaps = 52/210 (24%)
Query: 74 CQMLAWGCGCRSRPSDARLGVWVLFQAVGCSPGVWVLLQAVGCSPGGEDAIPCGQMLTWG 133
C+ L G G + P AR G G P VW + VGC GGE A+ WG
Sbjct: 236 CRELGCG-GALAAPGGARFGP-------GAGP-VW--MDDVGCG-GGEQALRDCPRSPWG 283
Query: 134 YGFCSRLSDAHLGVWELFQDIGCSPVGVGAVPGHQMLAWVSGCCSRLSRAHLREQTAVPG 193
C DA L V G P ++ GC RL
Sbjct: 284 RSNCDHSEDAGL-------------VCTGPAPRLRLADGPHGCAGRLE------------ 318
Query: 194 SQILIWVYGCCSRISDAHLGVWVLLQA------VGCSPGGVGAVPGCWMLIWGCGCCSRL 247
+W G + D W L A +GC GG A PG G G
Sbjct: 319 ----VWHGGRWGSVCD---DAWDLRDAAVACRELGC--GGALAAPGGAFFGEGSGPIILD 369
Query: 248 SDAHLGVQGAVPGCQMLTWGCESCSRLSDA 277
G + A+ C WG C DA
Sbjct: 370 DLRCRGNETALRFCPARPWGQHDCHHREDA 399
Score = 30.8 bits (68), Expect = 2.4
Identities = 42/159 (26%), Positives = 50/159 (31%), Gaps = 47/159 (29%)
Query: 243 CCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHLGVWVLFQAVRCSPVGVGAASGCQ 302
C RL H G G V C+ L DA AV C +G G A
Sbjct: 207 CAGRLEVWHGGRWGTV---------CDDGWDLRDA---------AVACRELGCGGAL--- 245
Query: 303 MLTWSVGAAPGCQMLAWGCGCCSRLSDAHLGVWVLLQALRCSPGCVG---AIPGYQMLTW 359
AAPG G G VW+ GC G A+ W
Sbjct: 246 -------AAPGGARFGPGAG----------PVWM------DDVGCGGGEQALRDCPRSPW 282
Query: 360 GCGSCSRLSDAHFGVQGPVPGCQMLTWGCGCSSRLSDAH 398
G +C DA GP P ++ GC+ RL H
Sbjct: 283 GRSNCDHSEDAGLVCTGPAPRLRLADGPHGCAGRLEVWH 321
>gi|60593040 keratin associated protein 5-10 [Homo sapiens]
Length = 202
Score = 33.1 bits (74), Expect = 0.49
Identities = 47/173 (27%), Positives = 50/173 (28%), Gaps = 40/173 (23%)
Query: 222 GCSPGGVGAVPGCWMLIWGCGCCSRLSDAHLGVQGAVPGCQMLTWGC-ESCSRLSDAHLG 280
GCS G GC GCG G G GC GC SC
Sbjct: 5 GCSGGCGSGCGGCGSGCGGCGS---------GCGGYGSGC----GGCGSSCCVPVCCCKP 51
Query: 281 VWVLFQAVRCSPVGV--GAASGCQMLTWSVGAAPGCQMLAWGCGCCSRLSDAHLGVWVLL 338
V A CS G G+ C S G C GCG C
Sbjct: 52 VCCCVPACSCSSCGSCGGSKGDCGSCGGSKGGCGSCGGSKGGCGSCGG------------ 99
Query: 339 QALRCSPGCVGAIPGYQMLTWGCGSCSRLSDAHFGVQGPVPGCQMLTWGCGCS 391
S G G+ G + GCGSC G GC CGCS
Sbjct: 100 -----SKGGCGSCGGSK---GGCGSCGGSKGGCGSCGGSKGGC----GSCGCS 140
>gi|61966761 leucine rich repeat containing 26 [Homo sapiens]
Length = 334
Score = 31.2 bits (69), Expect = 1.8
Identities = 46/190 (24%), Positives = 68/190 (35%), Gaps = 37/190 (19%)
Query: 238 IWGCGCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHL--GVWVLFQA-------V 288
+W + LG C + G SCS LS + G+ + +A V
Sbjct: 24 VWAQVSATASPSGSLGAPDCPEVCTCVPGGLASCSALSLPAVPPGLSLRLRALLLDHNRV 83
Query: 289 RCSPVGVGAASGC-QMLTWSVGAAPGCQMLA-WGCGC-------CSRLSDAHLGVWVLLQ 339
R P G A +G Q L + A WG G ++L G + L+
Sbjct: 84 RALPPGAFAGAGALQRLDLRENGLHSVHVRAFWGLGALQLLDLSANQLEALAPGTFAPLR 143
Query: 340 ALR-----------CSPGCVGAIPGYQMLTWGCGSCSRLSDAHFGVQGPVPGCQML---- 384
ALR P +GA+P + L+ + L+ G+ G +P L
Sbjct: 144 ALRNLSLAGNRLARLEPAALGALPLLRSLSLQDNELAALAP---GLLGRLPALDALHLRG 200
Query: 385 -TWGCGCSSR 393
WGCGC+ R
Sbjct: 201 NPWGCGCALR 210
>gi|60279697 keratin associated protein 5-7 [Homo sapiens]
Length = 165
Score = 31.2 bits (69), Expect = 1.8
Identities = 25/89 (28%), Positives = 27/89 (30%), Gaps = 6/89 (6%)
Query: 242 GCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHL----GVWVLFQAVRCSPVGV-- 295
GCC G G GC GC C + V A CS G
Sbjct: 2 GCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCGSCG 61
Query: 296 GAASGCQMLTWSVGAAPGCQMLAWGCGCC 324
G+ GC S G C GCG C
Sbjct: 62 GSKGGCGSCGGSKGGCGSCGGSKGGCGSC 90
>gi|239750916 PREDICTED: similar to hCG1803335 [Homo sapiens]
Length = 246
Score = 30.8 bits (68), Expect = 2.4
Identities = 40/181 (22%), Positives = 64/181 (35%)
Query: 182 RAHLREQTAVPGSQILIWVYGCCSRISDAHLGVWVLLQAVGCSPGGVGAVPGCWMLIWGC 241
R R +VPG Q + +R +++ G Q S +VPG G
Sbjct: 61 RVSSRATESVPGPQSQFQGHRVSARATESVPGPQSQCQGHRVSSRATESVPGPQSQRQGH 120
Query: 242 GCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHLGVWVLFQAVRCSPVGVGAASGC 301
+R +++ G Q G ++ ES G V +A +P G
Sbjct: 121 RVSARATESAPGPQSQCQGHRVSARATESVPGPQSQRQGHRVSSRATESAPGPQSQFQGH 180
Query: 302 QMLTWSVGAAPGCQMLAWGCGCCSRLSDAHLGVWVLLQALRCSPGCVGAIPGYQMLTWGC 361
++ + + PG Q G SR +++ G Q R S ++PG Q G
Sbjct: 181 RVSARATESVPGPQSQRQGHRVSSRATESVPGPQSQFQGHRVSARATESVPGPQSQFQGA 240
Query: 362 G 362
G
Sbjct: 241 G 241
Score = 30.4 bits (67), Expect = 3.1
Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 7/168 (4%)
Query: 230 AVPGCWMLIWGCGCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHLGVWVLFQAVR 289
+VPG G +R +++ G Q G ++ + ES G V +A
Sbjct: 69 SVPGPQSQFQGHRVSARATESVPGPQSQCQGHRVSSRATESVPGPQSQRQGHRVSARATE 128
Query: 290 CSPVGVGAASGCQMLTWSVGAAPGCQMLAWGCGCCSRLSDAHLGVWVLLQALRCSPGCVG 349
+P G ++ + + PG Q G SR +++ G Q R S
Sbjct: 129 SAPGPQSQCQGHRVSARATESVPGPQSQRQGHRVSSRATESAPGPQSQFQGHRVSARATE 188
Query: 350 AIPGYQMLTWGCGSCSRLSDAHFGVQGPVPGCQMLTWGCGCSSRLSDA 397
++PG Q G SR +++ VPG Q G S+R +++
Sbjct: 189 SVPGPQSQRQGHRVSSRATES-------VPGPQSQFQGHRVSARATES 229
>gi|239754979 PREDICTED: hypothetical protein [Homo sapiens]
Length = 780
Score = 30.4 bits (67), Expect = 3.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 289 RCSPVGVGAASGCQMLTWSVGAAPGCQMLAWGCGCCSRLS 328
R P+ +S C ++ AAPGC+ +W C CC++ S
Sbjct: 309 RSEPLRPSVSSSCAAVS---DAAPGCRSASW-CSCCAKES 344
>gi|239745314 PREDICTED: similar to hCG1803335 [Homo sapiens]
Length = 238
Score = 30.4 bits (67), Expect = 3.1
Identities = 52/226 (23%), Positives = 78/226 (34%), Gaps = 34/226 (15%)
Query: 180 LSRAHLREQTAVPGSQILIWVYGCCSRISDAHLGVWVLLQAVGCSPGGVGAVPGCWMLIW 239
L + R +VPG Q + SR +++ G Q S +VPG
Sbjct: 39 LHQRSARATESVPGPQSQCQGHRVSSRATESVPGPQSQFQGHRVSARATESVPGPQSQCQ 98
Query: 240 GCGCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHLGVWVLFQAVRCSPVGVGAAS 299
G SR +++ VPG Q G SR +++ G FQ R S
Sbjct: 99 GHRVSSRATES-------VPGPQSQRQGHRVSSRATESAPGPQSQFQGHRVS-------- 143
Query: 300 GCQMLTWSVGAAPGCQMLAWGCGCCSRLSDAHLGVWVLLQALRCSPGCVGAIPGYQMLTW 359
+ + PG Q G SR +++ G Q R S ++PG Q
Sbjct: 144 -----ARATESVPGPQSQRQGHRVSSRATESAPGPQSQFQGHRVSARATESVPGPQSQCQ 198
Query: 360 GCGSCSRLSDAHFGVQGPVPGCQMLTWGCGCSSRLSDAHLLVWVLL 405
G SR +++ G G S + L+ WVL+
Sbjct: 199 GHRVSSRATES--------------VSGSGASRCAIEWELIEWVLM 230
>gi|14192943 multiple EGF-like-domains 10 [Homo sapiens]
Length = 1140
Score = 30.0 bits (66), Expect = 4.1
Identities = 51/200 (25%), Positives = 63/200 (31%), Gaps = 56/200 (28%)
Query: 223 CSPGGVGAVPGCWMLIWGCGCCSRLS-DAHLGVQGAVPG---------CQMLTWGCESCS 272
CSPG G C + C C + D+ G PG C + T+G S
Sbjct: 400 CSPGFYGEA--CQQI---CSCQNGADCDSVTGKCTCAPGFKGIDCSTPCPLGTYGINCSS 454
Query: 273 RLSDAHLGVWVLFQAVRCSPV-----------GVGAASGCQMLTWSVGAAPGCQMLAWGC 321
R + V CSPV GV + C TW G CQ L
Sbjct: 455 RCGCKNDAV--------CSPVDGSCTCKAGWHGVDCSIRCPSGTWGFGCNLTCQCL--NG 504
Query: 322 GCCSRLSDAHLGVWVLLQALRCSPGCVG---AIPGYQMLTWGCGSCSRLSDAHFGVQGPV 378
G C+ L C+PG G +P Q T+G R +H
Sbjct: 505 GACNTLDG----------TCTCAPGWRGEKCELP-CQDGTYGLNCAERCDCSH------A 547
Query: 379 PGCQMLTWGCGCSSRLSDAH 398
GC T C C S H
Sbjct: 548 DGCHPTTGHCRCLPGWSGVH 567
>gi|5016090 nuclear receptor subfamily 0, group B, member 1 [Homo
sapiens]
Length = 470
Score = 29.6 bits (65), Expect = 5.4
Identities = 46/206 (22%), Positives = 63/206 (30%), Gaps = 48/206 (23%)
Query: 7 WVSVLLQAVGCSPGVVGAAPGCPMLT-----WGCGCCSRPSDAR--LLSDAHLWV----- 54
W +L + S AAP P WGC C P R LL ++ +
Sbjct: 8 WQGSILYNMLMSAKQTRAAPEAPETRLVDQCWGCSCGDEPGVGREGLLGGRNVALLYRCC 67
Query: 55 -------------WVLLQTIRCAPAGVGADPGCQMLAWGCGCRSRPSDARLGVWVLFQAV 101
+ +L + + A A WGC C S P R G+
Sbjct: 68 FCGKDHPRQGSILYSMLTSAKQTYAAPKAPEATLGPCWGCSCGSDPGVGRAGL------- 120
Query: 102 GCSPGVWVLLQAVGCSPGGEDAIPCGQMLTWGYGFCSRLSDAHL----------GVWELF 151
PG + C GED G +L Y + H+ G W
Sbjct: 121 ---PGGRPVALLYRCCFCGEDHPRQGSIL---YSLLTSSKQTHVAPAAPEARPGGAWWDR 174
Query: 152 QDIGCSPVGVGAVPGHQMLAWVSGCC 177
P G A+PG + A + CC
Sbjct: 175 SYFAQRPGGKEALPGGRATALLYRCC 200
>gi|222136641 NIMA-related kinase 9 [Homo sapiens]
Length = 979
Score = 29.6 bits (65), Expect = 5.4
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 355 QMLTWGCGSCSRLSDAHF----GVQ---GPVPGCQMLTWGCGCSSRLS---DAHLLVW 402
++LT+GC C +L ++ G+ GP+ G Q++ CG ++ D H+ W
Sbjct: 617 RLLTFGCNKCGQLGVGNYKKRLGINLLGGPLGGKQVIRVSCGDEFTIAATDDNHIFAW 674
>gi|38490568 keratin associated protein 10-4 [Homo sapiens]
Length = 401
Score = 29.6 bits (65), Expect = 5.4
Identities = 86/363 (23%), Positives = 105/363 (28%), Gaps = 84/363 (23%)
Query: 8 VSVLLQAVGCSPGVVGAAPGCPMLTWGCG---CCSRPSDARLLSDAHLWVWVLLQTIRCA 64
V V + V C P V P C CG CC + S + I C
Sbjct: 111 VPVCCKTVCCKP--VCCVPVC------CGDSSCCQQSSCQSACCTSSPCQQACCVPICCK 162
Query: 65 PAGVGADPGCQMLAWGCGCRSRPSDARLGVWVLFQAVGCSPGVWVLLQAVGCSPGGEDAI 124
P G C + C S P QAV C P C+P
Sbjct: 163 PVCSGISSSCCQQSSCVSCVSSPC---------CQAV-CEPSPCQSGCISSCTPS----- 207
Query: 125 PCGQMLTWGYGFCSRLSDAHLGVWELFQDIGCSPVGVGAVPGHQMLAWVSGCCSRLSRAH 184
C Q + C+ S Q C PV V + + S C + S
Sbjct: 208 -CCQQSSCQPACCTSSS---------CQQACCVPVCCKTVCCKPVCSEDSSSCCQQSSCQ 257
Query: 185 LREQTAVPGSQILIWVYGCCSRISDAHLGVWVLLQAVGCSPGGVGAVPGCWMLIWGCGCC 244
T+ P Q CC V V + V C P VG+VP C
Sbjct: 258 PACCTSSPCQQ------ACC---------VPVCCKPVCCKP--VGSVP----------IC 290
Query: 245 SRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHLGVWVLFQAVRCSPVGVGAASGCQML 304
S S P C + + C V V + V C PV GA+S C
Sbjct: 291 SGASSLCCQQSSCQPACCTSSQSQQGCC--------VPVCCKPVSCVPVCSGASSSCCQQ 342
Query: 305 TWSVGAAPGCQMLAWGCGCCSRLSDAHLGVWVLLQALRCSPGCVGAIPGYQMLTWGC-GS 363
+ CQ CC S LL C P C +P T C S
Sbjct: 343 S-------SCQPACCTTSCCRPSSSVS-----LLCRPVCRPACCVPVPSCCAPTSSCQPS 390
Query: 364 CSR 366
C R
Sbjct: 391 CCR 393
>gi|60593036 keratin associated protein 5-3 [Homo sapiens]
Length = 238
Score = 29.3 bits (64), Expect = 7.0
Identities = 42/170 (24%), Positives = 49/170 (28%), Gaps = 47/170 (27%)
Query: 222 GCSPGGVGAVPGCWMLIWGCGCCSRLSDAHLGVQGAVPGCQMLTWGCESCSRLSDAHLGV 281
GCS G + GC GCG G G GC + C+
Sbjct: 5 GCSGGCGSSCGGCGSSCGGCGS---------GYGGCGSGCCVPVCCCKPV---------- 45
Query: 282 WVLFQAVRCSPVGVGAASGCQMLTWSVGAAPGCQMLAWGCGCCSRLSDAHLGVWVLLQAL 341
C V + S C S G C GCG C S G +
Sbjct: 46 --------CCCVPACSCSSCGSCGGSKGVCGSCGGCKGGCGSCGG-SKGGCG------SS 90
Query: 342 RCSPGCVGAIPGYQMLTWGCGSCSRLSDAHFGVQGPVPGCQMLTWGCGCS 391
C P C + CGSC GV G G + CGCS
Sbjct: 91 CCVPVCCSS---------SCGSCG----GSKGVCGFRGGSKGGCGSCGCS 127
>gi|239750349 PREDICTED: hypothetical protein XP_002347377 [Homo
sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 9.2
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 89 DARLGVWVLFQAVGCSPGVWVLLQAVGCSPGGEDAIPCGQMLTWGYGFCSRLSDAHLGVW 148
D G+W+ +GC G+W+ GC + W G+ D G+W
Sbjct: 36 DIGYGIWMWDMDMGC--GIWIWDMGCGCG-----------IWIWDMGYAIWDMDVGYGIW 82
Query: 149 ELFQDIG 155
D+G
Sbjct: 83 MWNMDMG 89
Score = 28.9 bits (63), Expect = 9.2
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 15/94 (15%)
Query: 71 DPGCQMLAW--GCGCRSRPSDARLGVWVLFQAVGCSPGVWVLLQAVGCSPGGEDAIPCGQ 128
D GC + W GCGC D +W + G+W+ +G D
Sbjct: 47 DMGCGIWIWDMGCGCGIWIWDMGYAIWDM----DVGYGIWMWNMDMGYGLWMWD------ 96
Query: 129 MLTWGYGFCSRLSDAHLGVWELFQDIGCSPVGVG 162
+ GYG R+ D G+W++ G +G G
Sbjct: 97 -MDMGYGL--RMWDMGYGIWDMDVGYGIWDMGYG 127
>gi|239744653 PREDICTED: hypothetical protein XP_002343215 [Homo
sapiens]
Length = 198
Score = 28.9 bits (63), Expect = 9.2
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 89 DARLGVWVLFQAVGCSPGVWVLLQAVGCSPGGEDAIPCGQMLTWGYGFCSRLSDAHLGVW 148
D G+W+ +GC G+W+ GC + W G+ D G+W
Sbjct: 36 DIGYGIWMWDMDMGC--GIWIWDMGCGCG-----------IWIWDMGYAIWDMDVGYGIW 82
Query: 149 ELFQDIG 155
D+G
Sbjct: 83 MWNMDMG 89
Score = 28.9 bits (63), Expect = 9.2
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 15/94 (15%)
Query: 71 DPGCQMLAW--GCGCRSRPSDARLGVWVLFQAVGCSPGVWVLLQAVGCSPGGEDAIPCGQ 128
D GC + W GCGC D +W + G+W+ +G D
Sbjct: 47 DMGCGIWIWDMGCGCGIWIWDMGYAIWDM----DVGYGIWMWNMDMGYGLWMWD------ 96
Query: 129 MLTWGYGFCSRLSDAHLGVWELFQDIGCSPVGVG 162
+ GYG R+ D G+W++ G +G G
Sbjct: 97 -MDMGYGL--RMWDMGYGIWDMDVGYGIWDMGYG 127
>gi|23463326 POU domain class 5, transcription factor 2 [Homo
sapiens]
Length = 328
Score = 28.9 bits (63), Expect = 9.2
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 19/114 (16%)
Query: 19 PGVVGAAPGCPM------LTWGCGCCSRPSDARLLSDAHLWVWVLLQTIRCAPAGVGADP 72
PG G P PM LTW ++ + R++ VW ++ C V P
Sbjct: 14 PGSGGGGPRGPMPLRVDTLTW---LSTQAAPGRVM------VWPAVRPGICPGPDVWRIP 64
Query: 73 ----GCQMLAWGCGCRSRPSDARLGVWVLFQAVGCSPGVWVLLQAVGCSPGGED 122
+ W CR R + G W+ + G PG ++ L+++ P ED
Sbjct: 65 LGPLPHEFRGWIAPCRPRLGASEAGDWLRRPSEGALPGPYIALRSIPKLPPPED 118
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.140 0.523
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,171,186
Number of Sequences: 37866
Number of extensions: 1032857
Number of successful extensions: 2885
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2625
Number of HSP's gapped (non-prelim): 119
length of query: 421
length of database: 18,247,518
effective HSP length: 105
effective length of query: 316
effective length of database: 14,271,588
effective search space: 4509821808
effective search space used: 4509821808
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.