Guide to the Human Genome
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Name: LOC100128602 Sequence: fasta or formatted (163aa) NCBI GI: 169216933
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {163aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         20           2
 C cysteine            4.3          7           2
 D aspartate           2.5          4           1
 E glutamate           4.3          7           1
 F phenylalanine       3.1          5           1
 G glycine            11.0         18           2
 H histidine           3.1          5           2
 I isoleucine          1.2          2           1
 K lysine              3.7          6           1
 L leucine             8.0         13           2
 M methionine          2.5          4           1
 N asparagine          0.6          1           1
 P proline             9.2         15           2
 Q glutamine           6.1         10           2
 R arginine            7.4         12           1
 S serine             12.3         20           2
 T threonine           3.1          5           1
 V valine              3.7          6           2
 W tryptophan          0.6          1           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128602          1.000   PREDICTED: hypothetical protein 
FLJ31945              0.038   PREDICTED: hypothetical protein 
COL4A3                0.038   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.038   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.038   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.038   alpha 3 type IV collagen isoform 1 precursor 
WDR81                 0.029   PREDICTED: WD repeat domain 81 
NACA                  0.026   nascent polypeptide-associated complex alpha subuni...
CDC42BPG              0.026   CDC42 binding protein kinase gamma (DMPK-like) [Hom...
ATOH8                 0.022   atonal homolog 8 
FLJ10404              0.022   hypothetical protein LOC54540 
SERBP1                0.022   SERPINE1 mRNA binding protein 1 isoform 4 
SERBP1                0.022   SERPINE1 mRNA binding protein 1 isoform 3 
SERBP1                0.022   SERPINE1 mRNA binding protein 1 isoform 2 
SERBP1                0.022   SERPINE1 mRNA binding protein 1 isoform 1 
COL3A1                0.019   collagen type III alpha 1 preproprotein 
BAT2                  0.019   HLA-B associated transcript-2 
PTPN23                0.016   protein tyrosine phosphatase, non-receptor type 23 [...
LOC729989             0.016   PREDICTED: hypothetical protein 
LOC729989             0.016   PREDICTED: hypothetical protein 
LOC729989             0.016   PREDICTED: hypothetical protein 
KIF26A                0.016   kinesin family member 26A 
KIAA0649              0.016   1A6/DRIM (down-regulated in metastasis) interacting ...
LOC100292292          0.016   PREDICTED: hypothetical protein 
LOC100291384          0.016   PREDICTED: hypothetical protein XP_002347156 
LOC100294413          0.016   PREDICTED: hypothetical protein 
LOC100287578          0.016   PREDICTED: hypothetical protein XP_002343004 
AHCYL2                0.013   S-adenosylhomocysteine hydrolase-like 2 isoform b [...
AHCYL2                0.013   S-adenosylhomocysteine hydrolase-like 2 isoform a [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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