Guide to the Human Genome
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Name: LOC653354 Sequence: fasta or formatted (200aa) NCBI GI: 169216627
Description:

PREDICTED: similar to armadillo repeat containing, X-linked 6

Not currently referenced in the text

Other entries for this name:
alt prot {189aa} PREDICTED: similar to armadillo repeat containing, X-linked 6, pa...
alt mRNA {200aa} PREDICTED: similar to armadillo repeat containing, X-linked 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         15           1
 C cysteine            3.5          7           2
 D aspartate           3.0          6           1
 E glutamate           5.5         11           1
 F phenylalanine       5.0         10           1
 G glycine             6.0         12           1
 H histidine           0.5          1           1
 I isoleucine          5.5         11           1
 K lysine              6.0         12           2
 L leucine            12.5         25           2
 M methionine          4.0          8           1
 N asparagine          7.5         15           2
 P proline             6.0         12           1
 Q glutamine           4.5          9           2
 R arginine            3.0          6           1
 S serine             10.5         21           1
 T threonine           3.5          7           1
 V valine              4.5          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to armadillo repeat containing, ... 
LOC653354             1.000   PREDICTED: similar to armadillo repeat containing, ...
LOC653354             0.944   PREDICTED: similar to armadillo repeat containing, ...
ARMCX6                0.914   armadillo repeat containing, X-linked 6 
ARMCX6                0.914   armadillo repeat containing, X-linked 6 
ARMCX3                0.239   armadillo repeat containing, X-linked 3 
ARMCX3                0.239   armadillo repeat containing, X-linked 3 
ARMCX3                0.239   armadillo repeat containing, X-linked 3 
ARMC10                0.180   SVH protein isoform b 
ARMC10                0.180   SVH protein isoform a 
ARMCX1                0.180   armadillo repeat containing, X-linked 1 
ARMCX2                0.158   ALEX2 protein 
ARMCX2                0.158   ALEX2 protein 
LOC100292655          0.123   PREDICTED: similar to armadillo repeat containing, ...
ARMC10                0.099   SVH protein isoform e 
LOC389137             0.099   PREDICTED: similar to SVH protein isoform 1 
LOC389137             0.094   PREDICTED: similar to SVH protein isoform 1 
LOC389137             0.094   PREDICTED: similar to SVH protein isoform 2 
BHLHB9                0.094   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.094   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.094   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.094   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.094   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.094   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.094   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.094   basic helix-loop-helix domain containing, class B, 9...
ARMCX5                0.083   armadillo repeat containing, X-linked 5 
GPRASP2               0.064   G protein-coupled receptor associated sorting protei...
GPRASP2               0.064   G protein-coupled receptor associated sorting protei...
GPRASP1               0.056   G protein-coupled receptor associated sorting prote...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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