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Search of human proteins with 169216359
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169216359 PREDICTED: hypothetical protein [Homo sapiens]
(225 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169216359 PREDICTED: hypothetical protein [Homo sapiens] 483 e-137
gi|169216600 PREDICTED: hypothetical protein [Homo sapiens] 483 e-137
gi|18079216 CASK interacting protein 1 [Homo sapiens] 47 1e-05
gi|148276998 zinc finger protein 628 [Homo sapiens] 46 2e-05
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ... 46 3e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 45 4e-05
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens] 45 7e-05
gi|50301232 synaptopodin 2-like isoform b [Homo sapiens] 45 7e-05
gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens] 44 9e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 44 1e-04
gi|39812378 RAN binding protein 9 [Homo sapiens] 43 2e-04
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 43 2e-04
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 43 2e-04
gi|41281612 zinc finger protein 828 [Homo sapiens] 42 3e-04
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 42 3e-04
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 42 6e-04
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 42 6e-04
gi|22027541 programmed cell death 7 [Homo sapiens] 42 6e-04
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 41 7e-04
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 41 7e-04
gi|27436927 synoviolin 1 isoform b [Homo sapiens] 41 0.001
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 41 0.001
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 41 0.001
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 41 0.001
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 40 0.001
gi|27436925 synoviolin 1 isoform a [Homo sapiens] 40 0.001
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 40 0.001
gi|239508751 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
>gi|169216359 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 483 bits (1244), Expect = e-137
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MEDRYRSGGWGGGGWGLRLGFPYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSL 60
MEDRYRSGGWGGGGWGLRLGFPYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSL
Sbjct: 1 MEDRYRSGGWGGGGWGLRLGFPYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSL 60
Query: 61 ADLQSSRGGGCGGWGLLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAP 120
ADLQSSRGGGCGGWGLLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAP
Sbjct: 61 ADLQSSRGGGCGGWGLLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAP 120
Query: 121 RGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCAC 180
RGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCAC
Sbjct: 121 RGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCAC 180
Query: 181 RRGRSAAAGMAGAHGPRSPYLLRFSPGRMPARRAQGSGELVARRE 225
RRGRSAAAGMAGAHGPRSPYLLRFSPGRMPARRAQGSGELVARRE
Sbjct: 181 RRGRSAAAGMAGAHGPRSPYLLRFSPGRMPARRAQGSGELVARRE 225
>gi|169216600 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 483 bits (1244), Expect = e-137
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MEDRYRSGGWGGGGWGLRLGFPYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSL 60
MEDRYRSGGWGGGGWGLRLGFPYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSL
Sbjct: 1 MEDRYRSGGWGGGGWGLRLGFPYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSL 60
Query: 61 ADLQSSRGGGCGGWGLLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAP 120
ADLQSSRGGGCGGWGLLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAP
Sbjct: 61 ADLQSSRGGGCGGWGLLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAP 120
Query: 121 RGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCAC 180
RGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCAC
Sbjct: 121 RGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCAC 180
Query: 181 RRGRSAAAGMAGAHGPRSPYLLRFSPGRMPARRAQGSGELVARRE 225
RRGRSAAAGMAGAHGPRSPYLLRFSPGRMPARRAQGSGELVARRE
Sbjct: 181 RRGRSAAAGMAGAHGPRSPYLLRFSPGRMPARRAQGSGELVARRE 225
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 47.0 bits (110), Expect = 1e-05
Identities = 41/116 (35%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 94 PSPGSPRCQR------PASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIALGGSAAPGNP 147
P PGSP +R P SP P P PT +P + V P+G+ G P
Sbjct: 1253 PGPGSPEVKRAHGTPPPVSPKPPPPPTAPKPV-KAVAGLPSGSAGPSPAPSPARQPPAAL 1311
Query: 148 AAPAS--PSLGASVF--PSMLGCGESWRGPPALFCACRRGRSAAAGMAGAHGPRSP 199
A P PSLGAS PS G PAL + R+AAA A A P +P
Sbjct: 1312 AKPPGTPPSLGASPAKPPSP--------GAPALHVPAKPPRAAAAAAAAAAAPPAP 1359
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 46.2 bits (108), Expect = 2e-05
Identities = 36/113 (31%), Positives = 43/113 (38%), Gaps = 21/113 (18%)
Query: 22 PYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSLADLQSSRGGGCGGWGLLQRNA 81
P P P PPP P + L + AA E + D GC +
Sbjct: 262 PAPPAPPPPP--------PPVVPELFLAAAETTVELVYRCD-------GCEQGFSSEELL 306
Query: 82 SEDPPPPGPFRAPSPG-----SPRCQRPASPAPHPHPTLERPAPRGVRCFPAG 129
E P PGP AP P +P+ +P SP P P P PAP G C P G
Sbjct: 307 LEHQPCPGPDAAPQPQEAPAEAPKADQPPSPLPQPPPPAAAPAP-GFACLPCG 358
Score = 32.3 bits (72), Expect = 0.34
Identities = 34/123 (27%), Positives = 42/123 (34%), Gaps = 15/123 (12%)
Query: 22 PYVPTPAPPPSLA---PTWA-YPCSLLLLRILAARCAAETLSLADLQSSRGGGCGGW--- 74
P P P PPP A P +A PC + + A Q+ R G C G
Sbjct: 334 PPSPLPQPPPPAAAPAPGFACLPCGKSFRTVAGLSRHQHSHGAAGGQAFRCGSCDGSFPQ 393
Query: 75 --GLLQRN------ASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCF 126
LL A+ PPP A PA+P P P P+ A R +C
Sbjct: 394 LASLLAHQQCHVEEAAAGRPPPQAEAAEVTCPQEPLAPAAPVPPPPPSAPASAERPYKCA 453
Query: 127 PAG 129
G
Sbjct: 454 ECG 456
>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
sapiens]
Length = 278
Score = 45.8 bits (107), Expect = 3e-05
Identities = 38/127 (29%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 84 DPPPPG----PFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIALG 139
+PP PG P R+P P +PR A+P P R RG C P R S+++
Sbjct: 80 EPPEPGAGPSPKRSPPPRAPRASSLAAPEPQVGDWTSREGRRGGPCLPGARRRLFSLSVS 139
Query: 140 GSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCACRRGRSAAAGMAGAHGPRSP 199
S+ P P A + + P+ G + RGP A RG A + A SP
Sbjct: 140 RSSGP--PRARS-----CAPHPAREGMATT-RGPEAGLRVSGRGARAGSSTAPTRAQASP 191
Query: 200 YLLRFSP 206
F P
Sbjct: 192 ARPGFPP 198
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 45.4 bits (106), Expect = 4e-05
Identities = 53/151 (35%), Positives = 56/151 (37%), Gaps = 28/151 (18%)
Query: 67 RGGGCGGWGLLQRNASEDPP-------PPGPFRAPSPGSPRCQR-PASPAPHPHPTLER- 117
R G GG G N S P PPGP R + PA PA P P R
Sbjct: 1024 RDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRG 1083
Query: 118 -PAPRGVRCFPA--GTRGWVSIALGGSAAPGNPAAPASP----SLGASVFPSMLG----C 166
P P+G R G RG I G PGNP AP SP GA P G
Sbjct: 1084 APGPQGPRGDKGETGERGAAGIK-GHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPV 1142
Query: 167 GESWRGPPALFCACRRGRSAAAGMAGAHGPR 197
G S GPP + G S G G GPR
Sbjct: 1143 GPS--GPPG-----KDGTSGHPGPIGPPGPR 1166
Score = 40.8 bits (94), Expect = 0.001
Identities = 39/122 (31%), Positives = 49/122 (40%), Gaps = 11/122 (9%)
Query: 84 DPPPPG-PFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGW---VSIALG 139
DP PPG P R PG P +P SP P + P G + + + +A+G
Sbjct: 110 DPGPPGIPGRNGDPGIPG--QPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVG 167
Query: 140 GSAAPGNPAAPASP--SLGASVFPSMLGCGESWRGPPALFCACRRGRSAAAGMAGAHGPR 197
G A PA P P G S P G ++GPP + G S G GA GP
Sbjct: 168 GLAGYPGPAGPPGPPGPPGTSGHPGSPG-SPGYQGPPGE--PGQAGPSGPPGPPGAIGPS 224
Query: 198 SP 199
P
Sbjct: 225 GP 226
Score = 36.2 bits (82), Expect = 0.023
Identities = 43/146 (29%), Positives = 50/146 (34%), Gaps = 21/146 (14%)
Query: 62 DLQSSRGGGCGGWGLLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPR 121
D ++ G G GL N PG AP P PR +P P L P
Sbjct: 269 DGRNGEKGETGAPGLKGENGL-----PGENGAPGPMGPR----GAPGERGRPGL--PGAA 317
Query: 122 GVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCACR 181
G R G G A G PG P P + S P G P + +
Sbjct: 318 GAR----GNDG----ARGSDGQPGPPGPPGTAGFPGS--PGAKGEVGPAGSPGSNGAPGQ 367
Query: 182 RGRSAAAGMAGAHGPRSPYLLRFSPG 207
RG G AGA GP P + SPG
Sbjct: 368 RGEPGPQGHAGAQGPPGPPGINGSPG 393
Score = 33.5 bits (75), Expect = 0.15
Identities = 41/124 (33%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 87 PPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIALGGSAAPGN 146
PPGP A + G+P R + P + P PRG R AG G V A G G+
Sbjct: 415 PPGP--AGANGAPGL-RGGAGEPGKNGAKGEPGPRGERG-EAGIPG-VPGAKGEDGKDGS 469
Query: 147 PAAPASPSLGASVFPSMLG--CGESWRGPPALFCACRRGRSAAAGMAGAHGPRSPYLLRF 204
P P GA+ P G +RGP G AG GA GP P
Sbjct: 470 PGEP-----GANGLPGAAGERGAPGFRGPAGPNGI--PGEKGPAGERGAPGPAGPRGAAG 522
Query: 205 SPGR 208
PGR
Sbjct: 523 EPGR 526
Score = 32.7 bits (73), Expect = 0.26
Identities = 35/120 (29%), Positives = 41/120 (34%), Gaps = 30/120 (25%)
Query: 85 PPPPGP------FRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIAL 138
P PGP +P P PR S P T P P G P G RG
Sbjct: 1118 PGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPG-PRGNRG----ER 1172
Query: 139 GGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCACRRGRSAAAGMAGAHGPRS 198
G +PG+P P P GPP C G AAA +AG G ++
Sbjct: 1173 GSEGSPGHPGQPGPP------------------GPPGAPGPCCGGVGAAA-IAGIGGEKA 1213
Score = 32.3 bits (72), Expect = 0.34
Identities = 39/142 (27%), Positives = 47/142 (33%), Gaps = 13/142 (9%)
Query: 87 PPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSI---------- 136
PPGP A P P + S P P P G++ PAG G+ +
Sbjct: 214 PPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIK-GPAGIPGFPGMKGHRGFDGRN 272
Query: 137 -ALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPAL-FCACRRGRSAAAGMAGAH 194
G + APG P + P RG P L A RG A G G
Sbjct: 273 GEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQP 332
Query: 195 GPRSPYLLRFSPGRMPARRAQG 216
GP P PG A+ G
Sbjct: 333 GPPGPPGTAGFPGSPGAKGEVG 354
Score = 32.0 bits (71), Expect = 0.44
Identities = 37/129 (28%), Positives = 47/129 (36%), Gaps = 33/129 (25%)
Query: 84 DPPPPGPFRAP-------------SPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGT 130
+P PPGP +P +PGSP P A P P +G P G
Sbjct: 889 NPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEK-GSPGAQG----PPGA 943
Query: 131 RGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCACRRGRSAAAGM 190
G + IA G + A G P P S P + GES G+ A G+
Sbjct: 944 PGPLGIA-GITGARGLAGPPGMPGPRGSPGPQGVK-GES-------------GKPGANGL 988
Query: 191 AGAHGPRSP 199
+G GP P
Sbjct: 989 SGERGPPGP 997
Score = 31.2 bits (69), Expect = 0.75
Identities = 38/138 (27%), Positives = 40/138 (28%), Gaps = 25/138 (18%)
Query: 88 PGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIALGGSAAPGNP 147
PGP P P PR Q P P P G R P G G P P
Sbjct: 563 PGP---PGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGP 619
Query: 148 AAPASPS--------LGASVFPSMLGCGESWRGPPA----------LFCACRRGRSAAAG 189
P P G + G G GPP A G G
Sbjct: 620 PGPTGPGGDKGDTGPPGPQGLQGLPGTG----GPPGENGKPGEPGPKGDAGAPGAPGGKG 675
Query: 190 MAGAHGPRSPYLLRFSPG 207
AGA G R P L +PG
Sbjct: 676 DAGAPGERGPPGLAGAPG 693
>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
Length = 977
Score = 44.7 bits (104), Expect = 7e-05
Identities = 65/216 (30%), Positives = 77/216 (35%), Gaps = 36/216 (16%)
Query: 3 DRYRSGGWGGGGWGLRLGFPYVPTPAPPPSLAPTWAYPCSLLLLRILAAR--------CA 54
DRY G G G G P +P+P PSL P+W Y ++ +A A
Sbjct: 770 DRYVVEGTPGPGLG-----PRPRSPSPTPSLPPSWKYSPNIRAPPPIAYNPLLSPFFPQA 824
Query: 55 AETLSLADLQSSRGGGCGGWGLLQ---------RNA----SEDPPPPGPFRAPSPGSPRC 101
A TL A Q R G L + A E PP PGP + SP + R
Sbjct: 825 ARTLPKAQSQGPRATPKQGIKALDFMRHQPYQLKTAMFCFDEVPPTPGPIASGSPKTARV 884
Query: 102 QR-PASPAPHPHPTLERPAPRGVRCFPAGTRG---WVSIALGGSAAPGNPAAPASPSLGA 157
Q P P PT E AP + A T W + SA +PA P G
Sbjct: 885 QEIRRFSTPAPQPTAEPLAPTVLAPRAATTLDEPIWRTEL--ASAPVPSPAPPPEAPRGL 942
Query: 158 SVFPSMLGCGESWRGPPALFCACRRGRSAAAGMAGA 193
PS CG P F A R G A GA
Sbjct: 943 GASPS--SCGFQVARP--RFSATRTGLQAHVWRPGA 974
Score = 28.9 bits (63), Expect = 3.7
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 17/109 (15%)
Query: 70 GCGGWGLLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLER-----------P 118
G + L + PPP P + P P +P+ P +P P L+ P
Sbjct: 691 GARSYKTLPHVTPKTPPPMAP-KTPPPMTPKTPPPVAPKPPSRGLLDGLVNGAASSAGIP 749
Query: 119 AP-----RGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPS 162
P RG F + G+ PG P SPS S+ PS
Sbjct: 750 EPPRLQGRGGELFAKRQSRADRYVVEGTPGPGLGPRPRSPSPTPSLPPS 798
>gi|50301232 synaptopodin 2-like isoform b [Homo sapiens]
Length = 753
Score = 44.7 bits (104), Expect = 7e-05
Identities = 65/216 (30%), Positives = 77/216 (35%), Gaps = 36/216 (16%)
Query: 3 DRYRSGGWGGGGWGLRLGFPYVPTPAPPPSLAPTWAYPCSLLLLRILAAR--------CA 54
DRY G G G G P +P+P PSL P+W Y ++ +A A
Sbjct: 546 DRYVVEGTPGPGLG-----PRPRSPSPTPSLPPSWKYSPNIRAPPPIAYNPLLSPFFPQA 600
Query: 55 AETLSLADLQSSRGGGCGGWGLLQ---------RNA----SEDPPPPGPFRAPSPGSPRC 101
A TL A Q R G L + A E PP PGP + SP + R
Sbjct: 601 ARTLPKAQSQGPRATPKQGIKALDFMRHQPYQLKTAMFCFDEVPPTPGPIASGSPKTARV 660
Query: 102 QR-PASPAPHPHPTLERPAPRGVRCFPAGTRG---WVSIALGGSAAPGNPAAPASPSLGA 157
Q P P PT E AP + A T W + SA +PA P G
Sbjct: 661 QEIRRFSTPAPQPTAEPLAPTVLAPRAATTLDEPIWRTEL--ASAPVPSPAPPPEAPRGL 718
Query: 158 SVFPSMLGCGESWRGPPALFCACRRGRSAAAGMAGA 193
PS CG P F A R G A GA
Sbjct: 719 GASPS--SCGFQVARP--RFSATRTGLQAHVWRPGA 750
Score = 28.9 bits (63), Expect = 3.7
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 17/109 (15%)
Query: 70 GCGGWGLLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLER-----------P 118
G + L + PPP P + P P +P+ P +P P L+ P
Sbjct: 467 GARSYKTLPHVTPKTPPPMAP-KTPPPMTPKTPPPVAPKPPSRGLLDGLVNGAASSAGIP 525
Query: 119 AP-----RGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPS 162
P RG F + G+ PG P SPS S+ PS
Sbjct: 526 EPPRLQGRGGELFAKRQSRADRYVVEGTPGPGLGPRPRSPSPTPSLPPS 574
>gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens]
Length = 476
Score = 44.3 bits (103), Expect = 9e-05
Identities = 47/159 (29%), Positives = 60/159 (37%), Gaps = 20/159 (12%)
Query: 55 AETLSLADLQSSRGGGCGGWGLLQRNASEDPPPPGPFRA----PSPGSPRCQRP-ASPAP 109
AE L+ + GG G + +PPPP +R P+P SP P P P
Sbjct: 95 AEIDLLSSTLAELNGGRGHASRRPDRQAYEPPPPPAYRTGSLKPNPASPLPASPYGGPTP 154
Query: 110 HPHPTLERPAPRGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGES 169
+ T PA FP + V+ + G P A+ AS L FP + G GE
Sbjct: 155 ASYTTASTPAG---PAFPVQVK--VAQPVRGCGPPRRGASQASGPLPGPHFP-LPGRGEV 208
Query: 170 W---------RGPPALFCACRRGRSAAAGMAGAHGPRSP 199
W GP A A A G G HGP+ P
Sbjct: 209 WGPGYRSQREPGPGAKEEAAGVSGPAGRGRGGEHGPQVP 247
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 43.9 bits (102), Expect = 1e-04
Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 81 ASEDPPPPGPFRAPS-----PGSPRCQRPASPA-PHPHPTLERPAPRGVRCFPAGTRGWV 134
A+ +PPP G R PG P +RP PA P P RP P G A
Sbjct: 85 AAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAA 144
Query: 135 SIALGGSAAPGNPAAPASPS 154
++A G AP PA PA P+
Sbjct: 145 AVAAGPEPAPAGPAKPAGPA 164
Score = 36.6 bits (83), Expect = 0.018
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 81 ASEDPPPPGPFR-APSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIALG 139
A+ PPPP P A PG P A+PA P + G PA G + G
Sbjct: 268 AAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPA---G 324
Query: 140 GSAAPGNPAAPASPSLG 156
S PG AA A+P+ G
Sbjct: 325 VSGQPGPGAAAAAPAPG 341
Score = 31.2 bits (69), Expect = 0.75
Identities = 38/139 (27%), Positives = 49/139 (35%), Gaps = 20/139 (14%)
Query: 85 PPPPGPFRAPSPGSPRCQRPASPAPHPHP-TLERPAPRGVRCFPAGTRGWVSIALGGSAA 143
P P P AP+P +P A P P P P TL RP PAG A
Sbjct: 252 PAAPSPPAAPAPAAPAA---APPPPPPAPATLARPPGH-----PAGP------PTAAPAV 297
Query: 144 PGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCACRRGRSAAAGMAGAHGPRSPYLLR 203
P AA S GA+ P+ + GP + G +AAA G +++
Sbjct: 298 PPPAAAQNGGSAGAAPAPA-----PAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQ 352
Query: 204 FSPGRMPARRAQGSGELVA 222
+P A G A
Sbjct: 353 AAPPAAQTLAASGPASTAA 371
Score = 30.0 bits (66), Expect = 1.7
Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 97 GSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRG--WVSIALGGSAAPGNPAAPASPS 154
GS Q AS A H H P VR AG G VS + G+A G PAAPA +
Sbjct: 27 GSLESQLAASAAHHHHLAPRTPE---VRAAAAGALGNHVVSGSPAGAAGAG-PAAPAEGA 82
Query: 155 LGASVFPSMLGCGESWRGPP 174
GA+ P G G P
Sbjct: 83 PGAAPEPPPAGRARPGGGGP 102
Score = 29.6 bits (65), Expect = 2.2
Identities = 29/102 (28%), Positives = 37/102 (36%), Gaps = 21/102 (20%)
Query: 81 ASEDPPPPGPFRAPSPGSPRCQRPASP-----------------APHPHPTLERPAPRGV 123
A+ P PGP P PG P +PA P A P +L P +
Sbjct: 167 AARAGPGPGPGPGPGPG-PGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAAL 225
Query: 124 RCFPAGTRGWVSIALG---GSAAPGNPAAPASPSLGASVFPS 162
P I G+AAP PAAP+ P+ A P+
Sbjct: 226 LPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPA 267
Score = 28.1 bits (61), Expect = 6.3
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 81 ASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIALGG 140
A +P P GP + P + + P P P P P P + PAG + L G
Sbjct: 148 AGPEPAPAGPAKPAGPAALAARAGPGPGPGPGP---GPGPGPGK--PAGP--GAAQTLNG 200
Query: 141 SAAPGNPAAPASPSL 155
SAA N A+P++
Sbjct: 201 SAALLNSHHAAAPAV 215
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 43.1 bits (100), Expect = 2e-04
Identities = 43/127 (33%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 26 TPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSLADLQSSRGGGCGGWGLLQRNAS--- 82
+P PP +LAP S ++L A A + + S GGG GG GL A+
Sbjct: 20 SPPPPAALAPV-----SGVVLPAPPAVSAGSSPA-----GSPGGGAGGEGLGAAAAALLL 69
Query: 83 EDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRC--FPAGTRGWVSIALGG 140
PPPP P A P P P PA P PAP G+ PAG ++ G
Sbjct: 70 HPPPPPPPATAAPPPPP--PPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPTPALVAGS 127
Query: 141 SAAPGNP 147
SAA P
Sbjct: 128 SAAAPFP 134
Score = 31.6 bits (70), Expect = 0.57
Identities = 34/119 (28%), Positives = 41/119 (34%), Gaps = 10/119 (8%)
Query: 82 SEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIALGGS 141
S PPPP P + PA+ AP L P PAG+ G + G
Sbjct: 2 SGQPPPPPPQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGGGAGGEGLG 61
Query: 142 AAPG----NPAAPASPSLGASVFPSMLGCGESWRGPPALFCACRRGRSAAAGMAGAHGP 196
AA +P P P+ A P PPA A G A G+A GP
Sbjct: 62 AAAAALLLHPPPPPPPATAAPPPPPPPP------PPPASAAAPASGPPAPPGLAAGPGP 114
>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
Length = 1240
Score = 42.7 bits (99), Expect = 2e-04
Identities = 37/109 (33%), Positives = 42/109 (38%), Gaps = 15/109 (13%)
Query: 76 LLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVS 135
LL +++E PPPP P PS G+ P +P P P P L AP P
Sbjct: 429 LLPGSSAEPPPPPPPPPLPSVGAKAL--PTAPPPPPLPGLGAMAPPAPPLPP-------- 478
Query: 136 IALGGSAAPGNPAAPASPSLGASVFPSMLGCGESW----RGPPALFCAC 180
L GS P P P LG P L G W PP L C C
Sbjct: 479 -PLPGSCEFLPPPPPPLPGLGCPPPPPPLLPGMGWGPPPPPPPLLPCTC 526
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 42.7 bits (99), Expect = 2e-04
Identities = 37/109 (33%), Positives = 42/109 (38%), Gaps = 15/109 (13%)
Query: 76 LLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVS 135
LL +++E PPPP P PS G+ P +P P P P L AP P
Sbjct: 429 LLPGSSAEPPPPPPPPPLPSVGAKAL--PTAPPPPPLPGLGAMAPPAPPLPP-------- 478
Query: 136 IALGGSAAPGNPAAPASPSLGASVFPSMLGCGESW----RGPPALFCAC 180
L GS P P P LG P L G W PP L C C
Sbjct: 479 -PLPGSCEFLPPPPPPLPGLGCPPPPPPLLPGMGWGPPPPPPPLLPCTC 526
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 42.4 bits (98), Expect = 3e-04
Identities = 48/175 (27%), Positives = 63/175 (36%), Gaps = 40/175 (22%)
Query: 79 RNASEDPPPPGPFRAPSPGSP---RCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVS 135
R S +P P P +P P P P PAP P +P P P R W S
Sbjct: 272 RTTSPEPRKPSPSESPEPWKPFPAVSPEPRRPAPAVSPGSWKPGP------PGSPRPWKS 325
Query: 136 IALGGSAAPGNPAAPA---------------------SPSLGASVFPSMLGCGESWRGPP 174
S+ P PA PA +PS+ ++ + S SW+ PP
Sbjct: 326 NP-SASSGPWKPAKPAPSVSPGPWKPIPSVSPGPWKPTPSVSSASWKSSSVSPSSWKSPP 384
Query: 175 ALFCACRRG----RSAAAGMAGAH----GPRSPYLLRFSPGRMP-ARRAQGSGEL 220
A + + G R A ++ H P SP L + P P R GS EL
Sbjct: 385 ASPESWKSGPPELRKTAPTLSPEHWKAVPPVSPELRKPGPPLSPEIRSPAGSPEL 439
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 42.4 bits (98), Expect = 3e-04
Identities = 50/164 (30%), Positives = 58/164 (35%), Gaps = 32/164 (19%)
Query: 82 SEDPPPPGPFRAPSPGSPR--------CQRPASP-----------APHPHPTLERPAPRG 122
+E PPPP P R P+PGS + C PA P P + P G
Sbjct: 449 TEPPPPPPPQRPPTPGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPGPKGDIGAIGPVG 508
Query: 123 VRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCACRR 182
P G +G V I G G SLG P G + RG P
Sbjct: 509 AP-GPKGEKGDVGIGPFGQGEKGEKG-----SLGLPGPPGRDG-SKGMRGEPG-----EL 556
Query: 183 GRSAAAGMAGAHGPRSPYLLRFSPGRMPARRAQGS-GELVARRE 225
G G G GP+ P L PGR+ A QG GE R E
Sbjct: 557 GEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGTRGE 600
Score = 42.0 bits (97), Expect = 4e-04
Identities = 41/138 (29%), Positives = 52/138 (37%), Gaps = 13/138 (9%)
Query: 85 PPPPGPFRAPS----PGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIALGG 140
P P GP P PG P + P P L P P G + RG + ALGG
Sbjct: 963 PGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGL--PGPLGTKAACGKVRGSENCALGG 1020
Query: 141 SAAPGNPAAPASP-SLGASVFPSMLGCGESW-RGPPALFCACRRGRSAAAGMAGAHGPRS 198
G+ AP P S G+ P + G GPP +G + G+ G GP+
Sbjct: 1021 QCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPG-----DKGSPGSRGLPGFPGPQG 1075
Query: 199 PYLLRFSPGRMPARRAQG 216
P +PG R G
Sbjct: 1076 PAGRDGAPGNPGERGPPG 1093
Score = 34.7 bits (78), Expect = 0.068
Identities = 50/170 (29%), Positives = 60/170 (35%), Gaps = 19/170 (11%)
Query: 58 LSLADLQSSRG-----GGCGGWGLLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPH 112
L L L+ RG G G GL + P P R P P+ ++ P
Sbjct: 827 LGLPGLKGDRGEKGEAGPAGPPGLPGTTSLFTPHP----RMPGEQGPKGEKGDPGLPGEP 882
Query: 113 PTLERPAPRGVR--CFPAGTRGWVSIALGGSAAPGNPAAPASPSL-GASVFPSMLGCGES 169
RP G + P G +G A G A GNP AP G S P +G
Sbjct: 883 GLQGRPGELGPQGPTGPPGAKGQEG-AHGAPGAAGNPGAPGHVGAPGPSGPPGSVGA-PG 940
Query: 170 WRGPPALFCACRRGRSAAAGMAGAHGPRSPYLLRFSPGRMPARRAQGSGE 219
RG P RG AAG G+ GP P R PG G G+
Sbjct: 941 LRGTPGK--DGERGEKGAAGEEGSPGPVGP---RGDPGAPGLPGPPGKGK 985
Score = 30.8 bits (68), Expect = 0.98
Identities = 45/146 (30%), Positives = 50/146 (34%), Gaps = 29/146 (19%)
Query: 69 GGCGGWGLLQRNASEDPP-PPGPFRAPS-PGSPRCQ-RPASPAPHPHPTLER----PAPR 121
G G G+ E PP P GP P PG + R P P P P P
Sbjct: 1210 GAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPE 1269
Query: 122 GVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCACR 181
G R P G +G G S APG P S GA P G P +
Sbjct: 1270 GARG-PPGFKGHT----GDSGAPG----PRGES-GAMGLPGQ-------EGLPG-----K 1307
Query: 182 RGRSAAAGMAGAHGPRSPYLLRFSPG 207
G + G G GPR P SPG
Sbjct: 1308 DGDTGPTGPQGPQGPRGPPGKNGSPG 1333
Score = 28.1 bits (61), Expect = 6.3
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 85 PPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIALGGSAAP 144
P PG + PG P Q PA HP P P G +C P+ + S+A A P
Sbjct: 1567 PGEPGYAKDGLPGIPGPQGETGPAGHP-GLPGPPGPPG-QCDPSQCAYFASLA----ARP 1620
Query: 145 GNPAAP 150
GN P
Sbjct: 1621 GNVKGP 1626
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 41.6 bits (96), Expect = 6e-04
Identities = 32/103 (31%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 75 GLLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWV 134
G + ++ P P R+P PGSP+ Q SP P P AP A
Sbjct: 780 GGARSSSQRSPVGPAGVRSPRPGSPQMQASPSPGIAPKPKTPPTAPEPAAAVQAPLPR-E 838
Query: 135 SIALGGSAAPGNPAA---------PASPSLGASVFPSMLGCGE 168
+AL G AP P A P SPS GA P G+
Sbjct: 839 PLALAGRTAPAQPRAASAPPTDRSPQSPSQGARRQPGAAPLGK 881
Score = 29.6 bits (65), Expect = 2.2
Identities = 44/155 (28%), Positives = 57/155 (36%), Gaps = 15/155 (9%)
Query: 72 GGWGLLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPA-PRGVRCFPAGT 130
G WG + + DP PG A + + AP PT P P T
Sbjct: 512 GTWGPSPQE-TWDPMGPGSSIAFTQEAQNGLTQEELAP---PTPSAPGTPEPTEMQSPST 567
Query: 131 RGWVSIALGGSAAPGNPAAPASP------SLGASVFPSMLGCGESWRGPPALFCACRRGR 184
R +A GGS AAP P +L A P +LG GE+ G P + A R R
Sbjct: 568 REISDLAFGGSQQSPEVAAPEPPGSHPVGTLDADKCPEVLGPGEAASGRPRM--AIPRPR 625
Query: 185 SAAAGMAGAHGPRSPYLLRFSPGRMPARRAQGSGE 219
+ + P P + S +PA A GE
Sbjct: 626 DVRKLVKTTYAPGFPAGAQGS--GLPAPPADPCGE 658
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 41.6 bits (96), Expect = 6e-04
Identities = 45/158 (28%), Positives = 54/158 (34%), Gaps = 13/158 (8%)
Query: 25 PTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSLADLQSSRGGGCGGWGLLQRNAS-- 82
P P PPP P P S+L + + + A L CG GL AS
Sbjct: 224 PPPPPPPPPTPPPLPPASVLSDKAVKPQLAPLHLPPIPPPLPLLPPCGYPGLKAEPASPA 283
Query: 83 ----EDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVR--CFPAGTRGWVSI 136
E P PP P + SPR PA P P + + E P P + F A +
Sbjct: 284 QDAQEPPAPPPPLPPYASCSPRASLPAPPLPGVNSSSETPPPLPPKSPSFQAPPQ----- 338
Query: 137 ALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPP 174
G A P PA P S G G PP
Sbjct: 339 KAGAQALPAPPAPPGSQPFLQKKRHGRPGAGGGKLNPP 376
Score = 28.1 bits (61), Expect = 6.3
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 85 PPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRG 122
PPPP P AP P P A P +L R P+G
Sbjct: 12 PPPPPPLGAPPPPPP----SAPPVSTDTSSLRRADPKG 45
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 41.6 bits (96), Expect = 6e-04
Identities = 60/217 (27%), Positives = 75/217 (34%), Gaps = 19/217 (8%)
Query: 22 PYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSLADLQSSRGGGCGGWGLLQRNA 81
P +P+PA PP L P P L A + + A+ +SRGGG G G
Sbjct: 30 PPLPSPAFPPPL-PQRPGPFPGASAPFLQPPLALQPRASAE--ASRGGG--GAGAFYPVP 84
Query: 82 SEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTL-----ERPAPRGVRCFPAG-----TR 131
PPP P P PG+ +RP P P P P E P P A R
Sbjct: 85 PPPLPPPPPQCRPFPGTDAGERPRPPPPGPGPPWSPRWPEAPPPPADVLGDAALQRLRDR 144
Query: 132 GWVSIALGGSAAPGNPA---APASPSLGASVFPSMLGCGESWRGPPALFCACRRGRSAAA 188
W+ G G P A PSLG V +L R L A R + A
Sbjct: 145 QWLEAVFGTPRRAGCPVPQRTHAGPSLG-EVRARLLRALRLVRRLRGLSQALREAEADGA 203
Query: 189 GMAGAHGPRSPYLLRFSPGRMPARRAQGSGELVARRE 225
+ +P + P +A GE R E
Sbjct: 204 AWVLLYSQTAPLRAELAERLQPLTQAAYVGEARRRLE 240
Score = 33.9 bits (76), Expect = 0.12
Identities = 33/103 (32%), Positives = 35/103 (33%), Gaps = 23/103 (22%)
Query: 85 PPPPGPFRAPSPGSPRCQRPASPAPHPH----------PTLERPAPRGVRCFPAGTRGWV 134
PPPP PF P P P PA P P P P L+ P R +RG
Sbjct: 19 PPPPAPFGCPPPPLP---SPAFPPPLPQRPGPFPGASAPFLQPPLALQPRASAEASRG-- 73
Query: 135 SIALGGSAAPGNPAAP---ASPSLGASVFPSMLGCGESWRGPP 174
GG A P P P FP GE R PP
Sbjct: 74 ----GGGAGAFYPVPPPPLPPPPPQCRPFPG-TDAGERPRPPP 111
Score = 30.4 bits (67), Expect = 1.3
Identities = 28/91 (30%), Positives = 31/91 (34%), Gaps = 20/91 (21%)
Query: 85 PPPPGPFRAPSPGSPRCQRPASPAP-HPHPTLERPAPRGVRCFPAGTRGWVSIALGGSAA 143
PPPP P P P C P P+P P P +RP P FP G SA
Sbjct: 14 PPPPQP---PPPAPFGCPPPPLPSPAFPPPLPQRPGP-----FP-----------GASAP 54
Query: 144 PGNPAAPASPSLGASVFPSMLGCGESWRGPP 174
P P A G G + PP
Sbjct: 55 FLQPPLALQPRASAEASRGGGGAGAFYPVPP 85
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 41.2 bits (95), Expect = 7e-04
Identities = 40/136 (29%), Positives = 49/136 (36%), Gaps = 34/136 (25%)
Query: 85 PPPPGPFRAPSPGSPRCQRPASPA---PHPHPTLERPAPRGVRCFPAGTRGWVSIAL--- 138
P PPGP P PR +R S A P P + P P+G P G +G +++
Sbjct: 1585 PGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQG----PPGPQGPNGLSIPGE 1640
Query: 139 -------GGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCACRRGRSAAAGMA 191
G + PG P +P L P GPP G G
Sbjct: 1641 QGRQGMKGDAGEPGLPGRTGTPGLPGPPGP---------MGPP--------GDRGFTGKD 1683
Query: 192 GAHGPRSPYLLRFSPG 207
GA GPR P SPG
Sbjct: 1684 GAMGPRGPPGPPGSPG 1699
Score = 31.6 bits (70), Expect = 0.57
Identities = 37/134 (27%), Positives = 43/134 (32%), Gaps = 39/134 (29%)
Query: 84 DPPPPGPFRAPSPGSPR----------------CQRPASPAPHPHPTLERP-APRGVRCF 126
D PPGP P P P P P P L P P G
Sbjct: 1617 DIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMG---- 1672
Query: 127 PAGTRGWVSI--ALGGSAAPGNPAAPASPSL-GASVFPSMLGCGESWRGPPALFCACRRG 183
P G RG+ A+G PG P +P SP + G S P G G
Sbjct: 1673 PPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPG---------------DHG 1717
Query: 184 RSAAAGMAGAHGPR 197
R +G+ G G R
Sbjct: 1718 RPGPSGLKGEKGDR 1731
Score = 31.2 bits (69), Expect = 0.75
Identities = 33/120 (27%), Positives = 40/120 (33%), Gaps = 16/120 (13%)
Query: 79 RNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPA--GTRGWVSI 136
+++ P PPGP P R + P T P G R P G RG
Sbjct: 1771 QSSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERG---- 1826
Query: 137 ALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCACRRGRSAAAGMAGAHGP 196
G S G P P + P G RGPP GR +G+ G GP
Sbjct: 1827 -TGSSGPRGLPGPPGPQGESRTGPPGSTGS----RGPPG-----PPGRPGNSGIRGPPGP 1876
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 41.2 bits (95), Expect = 7e-04
Identities = 40/136 (29%), Positives = 49/136 (36%), Gaps = 34/136 (25%)
Query: 85 PPPPGPFRAPSPGSPRCQRPASPA---PHPHPTLERPAPRGVRCFPAGTRGWVSIAL--- 138
P PPGP P PR +R S A P P + P P+G P G +G +++
Sbjct: 2749 PGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQG----PPGPQGPNGLSIPGE 2804
Query: 139 -------GGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCACRRGRSAAAGMA 191
G + PG P +P L P GPP G G
Sbjct: 2805 QGRQGMKGDAGEPGLPGRTGTPGLPGPPGP---------MGPP--------GDRGFTGKD 2847
Query: 192 GAHGPRSPYLLRFSPG 207
GA GPR P SPG
Sbjct: 2848 GAMGPRGPPGPPGSPG 2863
Score = 31.6 bits (70), Expect = 0.57
Identities = 37/134 (27%), Positives = 43/134 (32%), Gaps = 39/134 (29%)
Query: 84 DPPPPGPFRAPSPGSPR----------------CQRPASPAPHPHPTLERP-APRGVRCF 126
D PPGP P P P P P P L P P G
Sbjct: 2781 DIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMG---- 2836
Query: 127 PAGTRGWVSI--ALGGSAAPGNPAAPASPSL-GASVFPSMLGCGESWRGPPALFCACRRG 183
P G RG+ A+G PG P +P SP + G S P G G
Sbjct: 2837 PPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPG---------------DHG 2881
Query: 184 RSAAAGMAGAHGPR 197
R +G+ G G R
Sbjct: 2882 RPGPSGLKGEKGDR 2895
Score = 31.2 bits (69), Expect = 0.75
Identities = 33/120 (27%), Positives = 40/120 (33%), Gaps = 16/120 (13%)
Query: 79 RNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPA--GTRGWVSI 136
+++ P PPGP P R + P T P G R P G RG
Sbjct: 2935 QSSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERG---- 2990
Query: 137 ALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCACRRGRSAAAGMAGAHGP 196
G S G P P + P G RGPP GR +G+ G GP
Sbjct: 2991 -TGSSGPRGLPGPPGPQGESRTGPPGSTGS----RGPPG-----PPGRPGNSGIRGPPGP 3040
>gi|27436927 synoviolin 1 isoform b [Homo sapiens]
Length = 617
Score = 40.8 bits (94), Expect = 0.001
Identities = 39/112 (34%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 90 PFRAPSPGSPRCQRPASPAPHPHPTLERPA--PRG-VRCFPAGTRGWVSIALGGSAAPGN 146
P ++P P P Q P PAPHP P L +P P+G + FP G L P
Sbjct: 339 PAQSPPPPEPADQGPP-PAPHPPPLLPQPPNFPQGLLPPFPPG-----MFPLWPPMGP-F 391
Query: 147 PAAPASPSLGASVFPSMLGCGESWRGPPALFCACRRGRSAAAGMAGAHGPRS 198
P P PS G +V P R P G SA A A A GP S
Sbjct: 392 PPVPPPPSSGEAVAPPSTSAAALSR-PSGAATTTAAGTSATAASATASGPGS 442
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 40.8 bits (94), Expect = 0.001
Identities = 47/165 (28%), Positives = 57/165 (34%), Gaps = 23/165 (13%)
Query: 16 GLRLGFPYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSLADLQSSRGGGCGGWG 75
G RL P P PPPS +P+ S L LA ++ T + +L+ G GG
Sbjct: 600 GPRLTLALAPGPPPPPSRSPS-----STLSGPDLAGHSSSATSTPEELRGYDSGPEGG-- 652
Query: 76 LLQRNASEDPPPPGPFRA-------PSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPA 128
A+ PPP A P P R A AP P P P C
Sbjct: 653 -----AAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIY 707
Query: 129 GTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGP 173
T G S + APG SP + G G S R P
Sbjct: 708 ETEGPES----ATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSP 748
Score = 33.1 bits (74), Expect = 0.20
Identities = 44/157 (28%), Positives = 55/157 (35%), Gaps = 20/157 (12%)
Query: 22 PYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSLADLQSSRGGGCGGWGLLQRNA 81
P P PPP P A P L+ + A+ LS S + LLQ
Sbjct: 385 PLSPLATPPPQAPPALALPP----LQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPF 440
Query: 82 SEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIALGGS 141
S P PP P SP A+P P+L P + PA S + S
Sbjct: 441 SPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPA------SPPMSPS 494
Query: 142 AAPGNPAAP--ASPSLGASVFPSMLGCGESWRGPPAL 176
A P A P A+P L + P + PPAL
Sbjct: 495 ATPPPQAPPPLAAPPLQLAKPPP--------QAPPAL 523
Score = 32.7 bits (73), Expect = 0.26
Identities = 60/236 (25%), Positives = 76/236 (32%), Gaps = 66/236 (27%)
Query: 22 PYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSLADLQSSRGGGCGGWGLLQRNA 81
P P+ PPP P A P L A A T L L
Sbjct: 490 PMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQAL------------------ 531
Query: 82 SEDPPPPGPFRAPSPGSPRCQRPAS---------------------PAPHPHPTLE---R 117
P PP F +P SP P S P+P PTL+ R
Sbjct: 532 ---PSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRR 588
Query: 118 PAPRGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPAL- 176
P G +G R +++AL APG P P+ P + G S P
Sbjct: 589 PPTPGPDTSVSGPR--LTLAL----APGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEEL 642
Query: 177 --FCACRRGRSAA-----AGMAGAH------GPRSPYLLRFSPGR-MPARRAQGSG 218
+ + G +AA A +A H GP P R +PG +P A G G
Sbjct: 643 RGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPG 698
Score = 28.9 bits (63), Expect = 3.7
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 18/84 (21%)
Query: 86 PPPGPFRAPSP-----------GSPRCQRPASPAPHPHPT----LERPAPRGVRCFPAGT 130
P P P P P S SPA P+ L+RPA R + +
Sbjct: 190 PRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSL---SSSA 246
Query: 131 RGWVSIALGGSAAPGNPAAPASPS 154
S A G +A G P APA PS
Sbjct: 247 TPLSSPARSGPSARGTPRAPAHPS 270
Score = 27.7 bits (60), Expect = 8.3
Identities = 45/173 (26%), Positives = 55/173 (31%), Gaps = 28/173 (16%)
Query: 24 VPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSLADLQSSRGGGCGGWGLLQRNASE 83
V P P PS P + + E A + S GGG LQR AS
Sbjct: 187 VGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGG------LQRPASR 240
Query: 84 D----------PPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGW 133
P GP +P +P P+ P P L P R A G
Sbjct: 241 SLSSSATPLSSPARSGPSARGTPRAPA--HPSQPKPKGLQALRPPQVTPPRKDAAPALGP 298
Query: 134 VS----------IALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPAL 176
+S AL A P PA P S SL + + S PP+L
Sbjct: 299 LSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSL 351
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 40.8 bits (94), Expect = 0.001
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 78 QRNASEDPPPPGPFRAPSPGSPRCQR----PASPAPHPHPTLERPAPRGVRCFPAG---- 129
+R PPPP P P P C R PA P + P +++ AP G +C G
Sbjct: 444 RRGLPRPPPPPPPPLPPPPRREPCHRAWPGPAQPLGNLRPPVQQSAPGGRKCVKEGEATG 503
Query: 130 ----TRGWVSIALGGSAAPGNPAAPASPSLG 156
TRG G A G AP S G
Sbjct: 504 PSKETRGPKECRQVGEAVLGEGGAPMQSSPG 534
Score = 32.0 bits (71), Expect = 0.44
Identities = 41/138 (29%), Positives = 48/138 (34%), Gaps = 35/138 (25%)
Query: 87 PPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIA--LGGSAAP 144
PPGP +P RP P P P P P PR C R W A LG P
Sbjct: 437 PPGP----TPARRGLPRPPPPPPPPLP----PPPRREPCH----RAWPGPAQPLGNLRPP 484
Query: 145 GNPAAPASPSL---GASVFPSMLGCGESWRGPPALFCACRRGRSAAAGMAGAHGPRSP-- 199
+AP G + PS + RGP CR+ A G GA SP
Sbjct: 485 VQQSAPGGRKCVKEGEATGPS-----KETRGPK----ECRQVGEAVLGEGGAPMQSSPGP 535
Query: 200 -------YLLRFSPGRMP 210
+R PG +P
Sbjct: 536 PNRCLQRLEMRCGPGLLP 553
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 40.8 bits (94), Expect = 0.001
Identities = 47/165 (28%), Positives = 57/165 (34%), Gaps = 23/165 (13%)
Query: 16 GLRLGFPYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSLADLQSSRGGGCGGWG 75
G RL P P PPPS +P+ S L LA ++ T + +L+ G GG
Sbjct: 869 GPRLTLALAPGPPPPPSRSPS-----STLSGPDLAGHSSSATSTPEELRGYDSGPEGG-- 921
Query: 76 LLQRNASEDPPPPGPFRA-------PSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPA 128
A+ PPP A P P R A AP P P P C
Sbjct: 922 -----AAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIY 976
Query: 129 GTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGP 173
T G S + APG SP + G G S R P
Sbjct: 977 ETEGPES----ATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSP 1017
Score = 37.0 bits (84), Expect = 0.014
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 80 NASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPT----LERPAPRGVRCFPAGTRGWVS 135
+A PP GP ++ S S SPA P+ L+RPA R + + S
Sbjct: 195 SARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSL---SSSATPLSS 251
Query: 136 IALGGSAAPGNPAAPASPS 154
A G +A G P APA PS
Sbjct: 252 PARSGPSARGTPRAPAHPS 270
Score = 34.3 bits (77), Expect = 0.088
Identities = 41/149 (27%), Positives = 50/149 (33%), Gaps = 14/149 (9%)
Query: 22 PYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSLADLQSSRGGGCGGWGLLQRNA 81
P P PPP P A P L+ + A+ LS S + LLQ
Sbjct: 610 PLSPLATPPPQAPPXLALPP----LQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPF 665
Query: 82 SEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIALGGS 141
S P PP P SP A+P P+L P P V P + A
Sbjct: 666 SPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAP-PLQVPPSPPASPPMSPSATPPP 724
Query: 142 AAPG---------NPAAPASPSLGASVFP 161
AP P+ PASP + S P
Sbjct: 725 QAPPPLAAPPLQVPPSPPASPPMSPSATP 753
Score = 32.3 bits (72), Expect = 0.34
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 83 EDPPPPGPFRAPSPGSPRCQRP-------ASPAPHPHPTLERPAPRGVRCFPAG------ 129
E PP P P +P SP P A+P P P L P +G+ P
Sbjct: 559 ETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPP 618
Query: 130 TRGWVSIALGGSAAPGNPAAPASPSLGASVFPS 162
+ +AL AP P+ PASP L PS
Sbjct: 619 PQAPPXLALPPLQAP--PSPPASPPLSPLATPS 649
Score = 31.6 bits (70), Expect = 0.57
Identities = 46/173 (26%), Positives = 61/173 (35%), Gaps = 45/173 (26%)
Query: 85 PPPPGPFRAPSPGSPRCQRPAS---------------------PAPHPHPTLE---RPAP 120
P PP F +P SP P S P+P PTL+ RP
Sbjct: 801 PSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPT 860
Query: 121 RGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPAL---F 177
G +G R +++AL APG P P+ P + G S P +
Sbjct: 861 PGPDTSVSGPR--LTLAL----APGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGY 914
Query: 178 CACRRGRSAA-----AGMAGAH------GPRSPYLLRFSPGR-MPARRAQGSG 218
+ G +AA A +A H GP P R +PG +P A G G
Sbjct: 915 DSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPG 967
Score = 27.7 bits (60), Expect = 8.3
Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 82 SEDPPP--PGPFRAPS---PGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSI 136
S PPP P P AP P SP P SP+ P P + P + +
Sbjct: 719 SATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPM 778
Query: 137 ALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPA 175
+ P P A A+P L A P G++ P A
Sbjct: 779 SPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSA 817
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 40.8 bits (94), Expect = 0.001
Identities = 47/165 (28%), Positives = 57/165 (34%), Gaps = 23/165 (13%)
Query: 16 GLRLGFPYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSLADLQSSRGGGCGGWG 75
G RL P P PPPS +P+ S L LA ++ T + +L+ G GG
Sbjct: 561 GPRLTLALAPGPPPPPSRSPS-----STLSGPDLAGHSSSATSTPEELRGYDSGPEGG-- 613
Query: 76 LLQRNASEDPPPPGPFRA-------PSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPA 128
A+ PPP A P P R A AP P P P C
Sbjct: 614 -----AAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIY 668
Query: 129 GTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGP 173
T G S + APG SP + G G S R P
Sbjct: 669 ETEGPES----ATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSP 709
Score = 37.0 bits (84), Expect = 0.014
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 80 NASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPT----LERPAPRGVRCFPAGTRGWVS 135
+A PP GP ++ S S SPA P+ L+RPA R + + S
Sbjct: 186 SARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSL---SSSATPLSS 242
Query: 136 IALGGSAAPGNPAAPASPS 154
A G +A G P APA PS
Sbjct: 243 PARSGPSARGTPRAPAHPS 261
Score = 33.1 bits (74), Expect = 0.20
Identities = 44/157 (28%), Positives = 55/157 (35%), Gaps = 20/157 (12%)
Query: 22 PYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSLADLQSSRGGGCGGWGLLQRNA 81
P P PPP P A P L+ + A+ LS S + LLQ
Sbjct: 346 PLSPLATPPPQAPPALALPP----LQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPF 401
Query: 82 SEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIALGGS 141
S P PP P SP A+P P+L P + PA S + S
Sbjct: 402 SPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPA------SPPMSPS 455
Query: 142 AAPGNPAAP--ASPSLGASVFPSMLGCGESWRGPPAL 176
A P A P A+P L + P + PPAL
Sbjct: 456 ATPPPQAPPPLAAPPLQLAKPPP--------QAPPAL 484
Score = 32.7 bits (73), Expect = 0.26
Identities = 60/236 (25%), Positives = 76/236 (32%), Gaps = 66/236 (27%)
Query: 22 PYVPTPAPPPSLAPTWAYPCSLLLLRILAARCAAETLSLADLQSSRGGGCGGWGLLQRNA 81
P P+ PPP P A P L A A T L L
Sbjct: 451 PMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQAL------------------ 492
Query: 82 SEDPPPPGPFRAPSPGSPRCQRPAS---------------------PAPHPHPTLE---R 117
P PP F +P SP P S P+P PTL+ R
Sbjct: 493 ---PSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRR 549
Query: 118 PAPRGVRCFPAGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPAL- 176
P G +G R +++AL APG P P+ P + G S P
Sbjct: 550 PPTPGPDTSVSGPR--LTLAL----APGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEEL 603
Query: 177 --FCACRRGRSAA-----AGMAGAH------GPRSPYLLRFSPGR-MPARRAQGSG 218
+ + G +AA A +A H GP P R +PG +P A G G
Sbjct: 604 RGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPG 659
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 40.4 bits (93), Expect = 0.001
Identities = 39/124 (31%), Positives = 43/124 (34%), Gaps = 27/124 (21%)
Query: 83 EDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRG------VRCFPAGTRGWVSI 136
+ PPPP P P PG Q P P + PRG C GT G S
Sbjct: 34 QPPPPPPPAPPPGPGPAPPQHPPRAEALPPEAADEGGPRGRLRSRDSSCGRPGTPGAAST 93
Query: 137 ALG---GSAAPGNP-AAPASPSLGASVFPSMLGCGESWRGPPALFCACRRGRSAAAGMAG 192
A G G G P +PA P A RGP F R AA+G A
Sbjct: 94 AKGSPNGECGRGEPQCSPAGPEGPA-------------RGPKVSFSC----RGAASGPAP 136
Query: 193 AHGP 196
GP
Sbjct: 137 GPGP 140
Score = 39.7 bits (91), Expect = 0.002
Identities = 52/163 (31%), Positives = 63/163 (38%), Gaps = 31/163 (19%)
Query: 68 GGGCGGWGLLQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFP 127
GGG G A PPPP P AP P P +P P P P + PR P
Sbjct: 6 GGGRPGESPGATPAPGPPPPPPP--APPQQQPPPPPPPAPPPGPGPAPPQHPPRAEALPP 63
Query: 128 -----AGTRGWVSIALGGSAAPGNPAAPASPSLGASVFPSMLGCGESWRGPPALFCACRR 182
G RG + PG P A AS + G+ P+ GE RG P
Sbjct: 64 EAADEGGPRGRLRSRDSSCGRPGTPGA-ASTAKGS---PN----GECGRGEP-------- 107
Query: 183 GRSAAAGMAG-AHGPRSPYLLRF-----SPGRMPARRAQGSGE 219
+ + AG G A GP+ + R +PG PA A GS E
Sbjct: 108 -QCSPAGPEGPARGPKVSFSCRGAASGPAPGPGPAEEA-GSEE 148
Score = 37.4 bits (85), Expect = 0.010
Identities = 29/73 (39%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 86 PPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIALGGSAAPG 145
PPPGP AP+ SP PASP P +PR R P G G + L G A P
Sbjct: 761 PPPGP--APAAASPGPPPPASPPGAP------ASPRAPRTSPYG--GLPAAPLAGPALPA 810
Query: 146 NPAAPASPSLGAS 158
+ AS L AS
Sbjct: 811 RRLSRASRPLSAS 823
Score = 30.4 bits (67), Expect = 1.3
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 81 ASEDPPPPGPFRAP-SPGSPRCQR-------PASPAPHPHPTLERPAPRGVRCFPAGTRG 132
A+ P PP P P +P SPR R PA+P P PA R R +
Sbjct: 768 AAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGP----ALPARRLSRASRPLSAS 823
Query: 133 WVSIALG--GSAAPGNPAAPASPSLG 156
S+ G G AA PA+ ++P LG
Sbjct: 824 QPSLPHGAPGPAASTRPASSSTPRLG 849
>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
Length = 616
Score = 40.4 bits (93), Expect = 0.001
Identities = 39/112 (34%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 90 PFRAPSPGSPRCQRPASPAPHPHPTLERPA--PRG-VRCFPAGTRGWVSIALGGSAAPGN 146
P ++P P P Q P PAPHP P L +P P+G + FP G L P
Sbjct: 339 PAQSPPPPEPADQGPP-PAPHPPPLLPQPPNFPQGLLPPFPPG-----MFPLWPPMGP-F 391
Query: 147 PAAPASPSLGASVFPSMLGCGESWRGPPALFCACRRGRSAAAGMAGAHGPRS 198
P P PS G +V P S P G SA A A A GP S
Sbjct: 392 PPVPPPPSSGEAVAPPSTSAALS--RPSGAATTTAAGTSATAASATASGPGS 441
Score = 29.6 bits (65), Expect = 2.2
Identities = 36/115 (31%), Positives = 43/115 (37%), Gaps = 26/115 (22%)
Query: 22 PYVPTPAPPPSLAPTWAYPCSLLLLRI---LAARCAAETLSLADLQSSRGGGCGGWGLLQ 78
P+ P P PPPS A P + L A AA T + A ++ G G G
Sbjct: 390 PFPPVP-PPPSSGEAVAPPSTSAALSRPSGAATTTAAGTSATAASATASGPGSG------ 442
Query: 79 RNASEDPPPPG-PFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRG 132
+A E P PG PF P G P P P P + P PAG G
Sbjct: 443 -SAPEAGPAPGFPFPPPWMGMP------LPPPFAFPPMPVP--------PAGFAG 482
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 40.4 bits (93), Expect = 0.001
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 78 QRNASEDPPPPGPFRAPSPGSPRCQR----PASPAPHPHPTLERPAPRGVRCFPAG---- 129
+R PPPP P P P C R PA P + P +++ AP G +C G
Sbjct: 772 RRGLPRPPPPPPPPLPPPPRREPCHRAWPGPAQPLGNLRPPVQQSAPGGRKCVKEGEATG 831
Query: 130 ----TRGWVSIALGGSAAPGNPAAPASPSLG 156
TRG G A G AP S G
Sbjct: 832 PSKETRGPKECRQVGEAVLGEGEAPMQSSPG 862
Score = 30.4 bits (67), Expect = 1.3
Identities = 41/138 (29%), Positives = 50/138 (36%), Gaps = 35/138 (25%)
Query: 87 PPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIA--LGGSAAP 144
PPGP +P RP P P P P P PR C R W A LG P
Sbjct: 765 PPGP----TPARRGLPRPPPPPPPPLP----PPPRREPCH----RAWPGPAQPLGNLRPP 812
Query: 145 GNPAAPASPSL---GASVFPSMLGCGESWRGPPALFCACRRGRSAAAG-----MAGAHGP 196
+AP G + PS + RGP CR+ A G M + GP
Sbjct: 813 VQQSAPGGRKCVKEGEATGPS-----KETRGPK----ECRQVGEAVLGEGEAPMQSSPGP 863
Query: 197 RSPYL----LRFSPGRMP 210
+ L +R PG +P
Sbjct: 864 PNRCLQRLEMRCGPGLLP 881
>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
sapiens]
Length = 884
Score = 40.4 bits (93), Expect = 0.001
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 78 QRNASEDPPPPGPFRAPSPGSPRCQR----PASPAPHPHPTLERPAPRGVRCFPAG---- 129
+R PPPP P P P C R PA P + P +++ AP G +C G
Sbjct: 772 RRGLPRPPPPPPPPLPPPPRREPCHRAWPGPAQPLGNLRPPVQQSAPGGRKCVKEGEATG 831
Query: 130 ----TRGWVSIALGGSAAPGNPAAPASPSLG 156
TRG G A G AP S G
Sbjct: 832 PSKETRGPKECRQVGEAVLGEGEAPMQSSPG 862
Score = 30.4 bits (67), Expect = 1.3
Identities = 41/138 (29%), Positives = 50/138 (36%), Gaps = 35/138 (25%)
Query: 87 PPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIA--LGGSAAP 144
PPGP +P RP P P P P P PR C R W A LG P
Sbjct: 765 PPGP----TPARRGLPRPPPPPPPPLP----PPPRREPCH----RAWPGPAQPLGNLRPP 812
Query: 145 GNPAAPASPSL---GASVFPSMLGCGESWRGPPALFCACRRGRSAAAG-----MAGAHGP 196
+AP G + PS + RGP CR+ A G M + GP
Sbjct: 813 VQQSAPGGRKCVKEGEATGPS-----KETRGPK----ECRQVGEAVLGEGEAPMQSSPGP 863
Query: 197 RSPYL----LRFSPGRMP 210
+ L +R PG +P
Sbjct: 864 PNRCLQRLEMRCGPGLLP 881
>gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 40.4 bits (93), Expect = 0.001
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 78 QRNASEDPPPPGPFRAPSPGSPRCQR----PASPAPHPHPTLERPAPRGVRCFPAG---- 129
+R PPPP P P P C R PA P + P +++ AP G +C G
Sbjct: 772 RRGLPRPPPPPPPPLPPPPRREPCHRAWPGPAQPLGNLRPPVQQSAPGGRKCVKEGEATG 831
Query: 130 ----TRGWVSIALGGSAAPGNPAAPASPSLG 156
TRG G A G AP S G
Sbjct: 832 PSKETRGPKECRQVGEAVLGEGEAPMQSSPG 862
Score = 30.4 bits (67), Expect = 1.3
Identities = 41/138 (29%), Positives = 50/138 (36%), Gaps = 35/138 (25%)
Query: 87 PPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSIA--LGGSAAP 144
PPGP +P RP P P P P P PR C R W A LG P
Sbjct: 765 PPGP----TPARRGLPRPPPPPPPPLP----PPPRREPCH----RAWPGPAQPLGNLRPP 812
Query: 145 GNPAAPASPSL---GASVFPSMLGCGESWRGPPALFCACRRGRSAAAG-----MAGAHGP 196
+AP G + PS + RGP CR+ A G M + GP
Sbjct: 813 VQQSAPGGRKCVKEGEATGPS-----KETRGPK----ECRQVGEAVLGEGEAPMQSSPGP 863
Query: 197 RSPYL----LRFSPGRMP 210
+ L +R PG +P
Sbjct: 864 PNRCLQRLEMRCGPGLLP 881
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.139 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,720,012
Number of Sequences: 37866
Number of extensions: 994851
Number of successful extensions: 13477
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 1123
Number of HSP's that attempted gapping in prelim test: 8446
Number of HSP's gapped (non-prelim): 4898
length of query: 225
length of database: 18,247,518
effective HSP length: 99
effective length of query: 126
effective length of database: 14,498,784
effective search space: 1826846784
effective search space used: 1826846784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.