Guide to the Human Genome
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Name: LOC100293662 Sequence: fasta or formatted (556aa) NCBI GI: 239754512
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         41           2
 C cysteine            2.5         14           1
 D aspartate           1.8         10           1
 E glutamate           4.7         26           1
 F phenylalanine       2.5         14           2
 G glycine            12.8         71           3
 H histidine           2.9         16           2
 I isoleucine          2.3         13           1
 K lysine              3.1         17           1
 L leucine             8.5         47           2
 M methionine          1.1          6           1
 N asparagine          2.0         11           2
 P proline            12.1         67           8
 Q glutamine           5.2         29           2
 R arginine           13.7         76           5
 S serine              4.7         26           2
 T threonine           2.3         13           2
 V valine              8.5         47           3
 W tryptophan          1.3          7           2
 Y tyrosine            0.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289444          0.902   PREDICTED: hypothetical protein 
LOC100289444          0.902   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.902   PREDICTED: hypothetical protein 
WASL                  0.025   Wiskott-Aldrich syndrome gene-like protein 
SFPQ                  0.025   splicing factor proline/glutamine rich (polypyrimidin...
ZNF341                0.025   zinc finger protein 341 
FMNL1                 0.024   formin-like 1 
HCN2                  0.024   hyperpolarization activated cyclic nucleotide-gated...
WAS                   0.024   Wiskott-Aldrich syndrome protein 
SETD1B                0.024   SET domain containing 1B 
LMTK3                 0.024   lemur tyrosine kinase 3 
EMID1                 0.024   EMI domain containing 1 
PDCD7                 0.024   programmed cell death 7 
PRB1                  0.023   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PCLO                  0.023   piccolo isoform 2 
PCLO                  0.023   piccolo isoform 1 
TAOK2                 0.022   TAO kinase 2 isoform 1 
BAI1                  0.022   brain-specific angiogenesis inhibitor 1 precursor [...
FMNL2                 0.022   formin-like 2 
WASF2                 0.022   WAS protein family, member 2 
PRB2                  0.022   proline-rich protein BstNI subfamily 2 
MYST3                 0.022   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.022   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.022   MYST histone acetyltransferase (monocytic leukemia)...
C9orf75               0.022   hypothetical protein LOC286262 isoform 2 
C9orf75               0.022   hypothetical protein LOC286262 isoform 1 
COL5A1                0.021   alpha 1 type V collagen preproprotein 
ATN1                  0.021   atrophin-1 
ATN1                  0.021   atrophin-1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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