Guide to the Human Genome
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Name: LOC100292299 Sequence: fasta or formatted (72aa) NCBI GI: 239756727
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.4          1           1
 C cysteine            0.0          0           0
 D aspartate           0.0          0           0
 E glutamate           8.3          6           1
 F phenylalanine       0.0          0           0
 G glycine             1.4          1           1
 H histidine           0.0          0           0
 I isoleucine          1.4          1           1
 K lysine              2.8          2           1
 L leucine             4.2          3           1
 M methionine         20.8         15           2
 N asparagine          0.0          0           0
 P proline             1.4          1           1
 Q glutamine           0.0          0           0
 R arginine            0.0          0           0
 S serine              0.0          0           0
 T threonine           1.4          1           1
 V valine             54.2         39           5
 W tryptophan          2.8          2           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291477          0.972   PREDICTED: hypothetical protein XP_002347760 
LOC100287829          0.972   PREDICTED: hypothetical protein XP_002343532 
LOC388849             0.421   PREDICTED: similar to hCG1732289 
LOC388849             0.206   PREDICTED: similar to hCG1732289 
LOC100289996          0.103   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.103   PREDICTED: hypothetical protein XP_002343076 
SLC44A2               0.037   solute carrier family 44, member 2 isoform 1 
SLC44A2               0.037   solute carrier family 44, member 2 isoform 2 
LOC100289316          0.037   PREDICTED: hypothetical protein 
LOC100290205          0.037   PREDICTED: hypothetical protein XP_002348254 
LOC100289316          0.037   PREDICTED: hypothetical protein XP_002343619 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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