Guide to the Human Genome
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Name: LOC100130370 Sequence: fasta or formatted (256aa) NCBI GI: 169211191
Description:

PREDICTED: similar to hCG1816473

Not currently referenced in the text

Other entries for this name:
alt prot {256aa} PREDICTED: similar to hCG1816473
alt prot {256aa} PREDICTED: similar to hCG1816473
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         27           2
 C cysteine            5.5         14           1
 D aspartate           3.9         10           1
 E glutamate           3.9         10           1
 F phenylalanine       1.6          4           1
 G glycine            10.2         26           2
 H histidine           3.5          9           2
 I isoleucine          0.8          2           1
 K lysine              0.0          0           0
 L leucine            12.9         33           4
 M methionine          1.2          3           1
 N asparagine          0.4          1           1
 P proline            13.7         35           2
 Q glutamine           3.5          9           2
 R arginine            5.5         14           2
 S serine              9.8         25           3
 T threonine           5.5         14           1
 V valine              3.5          9           2
 W tryptophan          3.9         10           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1816473 
LOC100130370          0.996   PREDICTED: similar to hCG1816473 
LOC100130370          0.989   PREDICTED: similar to hCG1816473 
DRD4                  0.028   dopamine receptor D4 
OBSCN                 0.026   obscurin, cytoskeletal calmodulin and titin-interac...
MESP2                 0.024   mesoderm posterior 2 homolog 
CITED4                0.022   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
C6orf132              0.021   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.021   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.021   PREDICTED: hypothetical protein LOC647024 
WNK2                  0.021   WNK lysine deficient protein kinase 2 
SALL4                 0.019   sal-like 4 
LPHN1                 0.019   latrophilin 1 isoform 1 precursor 
LPHN1                 0.019   latrophilin 1 isoform 2 precursor 
RERE                  0.019   atrophin-1 like protein isoform b 
RERE                  0.019   atrophin-1 like protein isoform a 
RERE                  0.019   atrophin-1 like protein isoform a 
ZFR2                  0.019   zinc finger RNA binding protein 2 isoform 1 
FOXD4                 0.019   forkhead box D4 
SREBF1                0.017   sterol regulatory element binding transcription fact...
SREBF1                0.017   sterol regulatory element binding transcription fact...
LOC100293608          0.017   PREDICTED: similar to HSPC088 
KHSRP                 0.017   KH-type splicing regulatory protein 
FOXD4L1               0.017   forkhead box D4-like 1 
INF2                  0.017   inverted formin 2 isoform 2 
INF2                  0.017   inverted formin 2 isoform 1 
NACA                  0.017   nascent polypeptide-associated complex alpha subuni...
LOC100133142          0.015   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.015   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100288801          0.015   PREDICTED: hypothetical protein XP_002342402 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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