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Search of human proteins with 169204710
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169204710 PREDICTED: hypothetical protein [Homo sapiens]
(241 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169204710 PREDICTED: hypothetical protein [Homo sapiens] 494 e-140
gi|169205273 PREDICTED: hypothetical protein [Homo sapiens] 494 e-140
gi|169204150 PREDICTED: hypothetical protein [Homo sapiens] 494 e-140
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] 32 0.38
gi|228008333 rhophilin, Rho GTPase binding protein 2 [Homo sapiens] 31 0.84
gi|118572603 ubinuclein 1 [Homo sapiens] 30 1.9
gi|118572601 ubinuclein 1 [Homo sapiens] 30 1.9
gi|14249386 zinc finger protein 496 [Homo sapiens] 29 3.2
gi|58761544 amine oxidase (flavin containing) domain 2 isoform a... 29 4.2
gi|58761546 amine oxidase (flavin containing) domain 2 isoform b... 29 4.2
gi|31542650 MANSC domain containing 1 [Homo sapiens] 29 4.2
gi|22325364 ubiquitin associated protein 2 [Homo sapiens] 29 4.2
gi|4503433 E2F transcription factor 3 [Homo sapiens] 28 7.1
gi|21735548 centrosomal protein 2 [Homo sapiens] 28 7.1
gi|169173182 PREDICTED: hypothetical protein [Homo sapiens] 28 7.1
gi|187936949 solute carrier family 39 (zinc transporter), member... 28 7.1
gi|55741750 solute carrier family 39 (zinc transporter), member ... 28 7.1
gi|78499633 phospholipase C, eta 2 [Homo sapiens] 28 9.3
gi|239747637 PREDICTED: hypothetical protein XP_002347915, parti... 28 9.3
gi|5032031 RNA binding motif protein 5 [Homo sapiens] 28 9.3
>gi|169204710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 241
Score = 494 bits (1273), Expect = e-140
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MAMTYPKEVAQGHREAYGESRGARVLSAALIGGGEDAEHQLQCQEELHSHRLASRRAVAE 60
MAMTYPKEVAQGHREAYGESRGARVLSAALIGGGEDAEHQLQCQEELHSHRLASRRAVAE
Sbjct: 1 MAMTYPKEVAQGHREAYGESRGARVLSAALIGGGEDAEHQLQCQEELHSHRLASRRAVAE 60
Query: 61 LGTEKRRMRKGHLCREGGAHRDCAGLIKDIRTLVQWLKDGKGRELPETSTKEALTALSPT 120
LGTEKRRMRKGHLCREGGAHRDCAGLIKDIRTLVQWLKDGKGRELPETSTKEALTALSPT
Sbjct: 61 LGTEKRRMRKGHLCREGGAHRDCAGLIKDIRTLVQWLKDGKGRELPETSTKEALTALSPT 120
Query: 121 ETWMRLFLHDGQGGRSQQSVCILLCSGIPQDLPLVDGKVVATHSIDSQVPADVCWRDLME 180
ETWMRLFLHDGQGGRSQQSVCILLCSGIPQDLPLVDGKVVATHSIDSQVPADVCWRDLME
Sbjct: 121 ETWMRLFLHDGQGGRSQQSVCILLCSGIPQDLPLVDGKVVATHSIDSQVPADVCWRDLME 180
Query: 181 QSGSGHSPQQLGSHVEGGSENGDVAAHQAGHSHGRVDVGPAYVAQSLYQGANTQAKRHGN 240
QSGSGHSPQQLGSHVEGGSENGDVAAHQAGHSHGRVDVGPAYVAQSLYQGANTQAKRHGN
Sbjct: 181 QSGSGHSPQQLGSHVEGGSENGDVAAHQAGHSHGRVDVGPAYVAQSLYQGANTQAKRHGN 240
Query: 241 L 241
L
Sbjct: 241 L 241
>gi|169205273 PREDICTED: hypothetical protein [Homo sapiens]
Length = 241
Score = 494 bits (1273), Expect = e-140
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MAMTYPKEVAQGHREAYGESRGARVLSAALIGGGEDAEHQLQCQEELHSHRLASRRAVAE 60
MAMTYPKEVAQGHREAYGESRGARVLSAALIGGGEDAEHQLQCQEELHSHRLASRRAVAE
Sbjct: 1 MAMTYPKEVAQGHREAYGESRGARVLSAALIGGGEDAEHQLQCQEELHSHRLASRRAVAE 60
Query: 61 LGTEKRRMRKGHLCREGGAHRDCAGLIKDIRTLVQWLKDGKGRELPETSTKEALTALSPT 120
LGTEKRRMRKGHLCREGGAHRDCAGLIKDIRTLVQWLKDGKGRELPETSTKEALTALSPT
Sbjct: 61 LGTEKRRMRKGHLCREGGAHRDCAGLIKDIRTLVQWLKDGKGRELPETSTKEALTALSPT 120
Query: 121 ETWMRLFLHDGQGGRSQQSVCILLCSGIPQDLPLVDGKVVATHSIDSQVPADVCWRDLME 180
ETWMRLFLHDGQGGRSQQSVCILLCSGIPQDLPLVDGKVVATHSIDSQVPADVCWRDLME
Sbjct: 121 ETWMRLFLHDGQGGRSQQSVCILLCSGIPQDLPLVDGKVVATHSIDSQVPADVCWRDLME 180
Query: 181 QSGSGHSPQQLGSHVEGGSENGDVAAHQAGHSHGRVDVGPAYVAQSLYQGANTQAKRHGN 240
QSGSGHSPQQLGSHVEGGSENGDVAAHQAGHSHGRVDVGPAYVAQSLYQGANTQAKRHGN
Sbjct: 181 QSGSGHSPQQLGSHVEGGSENGDVAAHQAGHSHGRVDVGPAYVAQSLYQGANTQAKRHGN 240
Query: 241 L 241
L
Sbjct: 241 L 241
>gi|169204150 PREDICTED: hypothetical protein [Homo sapiens]
Length = 241
Score = 494 bits (1273), Expect = e-140
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MAMTYPKEVAQGHREAYGESRGARVLSAALIGGGEDAEHQLQCQEELHSHRLASRRAVAE 60
MAMTYPKEVAQGHREAYGESRGARVLSAALIGGGEDAEHQLQCQEELHSHRLASRRAVAE
Sbjct: 1 MAMTYPKEVAQGHREAYGESRGARVLSAALIGGGEDAEHQLQCQEELHSHRLASRRAVAE 60
Query: 61 LGTEKRRMRKGHLCREGGAHRDCAGLIKDIRTLVQWLKDGKGRELPETSTKEALTALSPT 120
LGTEKRRMRKGHLCREGGAHRDCAGLIKDIRTLVQWLKDGKGRELPETSTKEALTALSPT
Sbjct: 61 LGTEKRRMRKGHLCREGGAHRDCAGLIKDIRTLVQWLKDGKGRELPETSTKEALTALSPT 120
Query: 121 ETWMRLFLHDGQGGRSQQSVCILLCSGIPQDLPLVDGKVVATHSIDSQVPADVCWRDLME 180
ETWMRLFLHDGQGGRSQQSVCILLCSGIPQDLPLVDGKVVATHSIDSQVPADVCWRDLME
Sbjct: 121 ETWMRLFLHDGQGGRSQQSVCILLCSGIPQDLPLVDGKVVATHSIDSQVPADVCWRDLME 180
Query: 181 QSGSGHSPQQLGSHVEGGSENGDVAAHQAGHSHGRVDVGPAYVAQSLYQGANTQAKRHGN 240
QSGSGHSPQQLGSHVEGGSENGDVAAHQAGHSHGRVDVGPAYVAQSLYQGANTQAKRHGN
Sbjct: 181 QSGSGHSPQQLGSHVEGGSENGDVAAHQAGHSHGRVDVGPAYVAQSLYQGANTQAKRHGN 240
Query: 241 L 241
L
Sbjct: 241 L 241
>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
Length = 322
Score = 32.3 bits (72), Expect = 0.38
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 29 ALIGGGEDAEHQLQCQEELHSHRLASRRAVAELGTEKRRMR 69
A GG ED E +L+ ++ H H+ +SRR E EK R+R
Sbjct: 230 AYSGGAEDLERELKKEKPKHEHKSSSRREARE---EKTRIR 267
>gi|228008333 rhophilin, Rho GTPase binding protein 2 [Homo sapiens]
Length = 686
Score = 31.2 bits (69), Expect = 0.84
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 34 GEDAEHQLQCQEELHSHRLASRRAVAEL--GTEKRRMRKGHLCREGGAHRDC---AGLIK 88
G D +HQ +C +L+ H +A L ++R++ K HL R H + A L K
Sbjct: 372 GTDLDHQEKCLSQLYDHMPEGLTPLATLKNDQQRRQLGKSHLRRAMAHHEESVREASLCK 431
Query: 89 DIRTL 93
+R++
Sbjct: 432 KLRSI 436
>gi|118572603 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 30.0 bits (66), Expect = 1.9
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 14/138 (10%)
Query: 7 KEVAQGHREAYGESRGARVLSAALIGGGEDAEHQL-QCQEELHSHRLASRRAVAELGTEK 65
KE+AQ R A GESR + + + G D E Q + ++ S A + +
Sbjct: 366 KELAQAARAAEGESR-QKFFTQDINGILLDIEAQTRELSSQVRSGVYAYLASFLPCSKDA 424
Query: 66 --RRMRKGHLCREGGAHRDCAGLIKDIRTLVQWLKDGKGRELPETSTKEALTALSPTETW 123
+R RK HL +GG ++ +Q LK+ GR +PE K + T+
Sbjct: 425 LLKRARKLHLYEQGGR----------LKEPLQKLKEAIGRAMPEQMAKYQDECQAHTQAK 474
Query: 124 MRLFLHDGQGGRSQQSVC 141
+ L + + + +C
Sbjct: 475 VAKMLEEEKDKEQRDRIC 492
>gi|118572601 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 30.0 bits (66), Expect = 1.9
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 14/138 (10%)
Query: 7 KEVAQGHREAYGESRGARVLSAALIGGGEDAEHQL-QCQEELHSHRLASRRAVAELGTEK 65
KE+AQ R A GESR + + + G D E Q + ++ S A + +
Sbjct: 366 KELAQAARAAEGESR-QKFFTQDINGILLDIEAQTRELSSQVRSGVYAYLASFLPCSKDA 424
Query: 66 --RRMRKGHLCREGGAHRDCAGLIKDIRTLVQWLKDGKGRELPETSTKEALTALSPTETW 123
+R RK HL +GG ++ +Q LK+ GR +PE K + T+
Sbjct: 425 LLKRARKLHLYEQGGR----------LKEPLQKLKEAIGRAMPEQMAKYQDECQAHTQAK 474
Query: 124 MRLFLHDGQGGRSQQSVC 141
+ L + + + +C
Sbjct: 475 VAKMLEEEKDKEQRDRIC 492
>gi|14249386 zinc finger protein 496 [Homo sapiens]
Length = 587
Score = 29.3 bits (64), Expect = 3.2
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 33 GGEDAEHQLQCQEELHS------HRLASRRAVAELGTEKRRMRKGHLCREGG 78
G ED++H C EEL S AS R+ E G E + +K ++C G
Sbjct: 361 GDEDSQHGPYCTEELGSPTEKQRSLPASHRSSTEAGGEVQTSKKSYVCPNCG 412
>gi|58761544 amine oxidase (flavin containing) domain 2 isoform a
[Homo sapiens]
Length = 876
Score = 28.9 bits (63), Expect = 4.2
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 190 QLGSHVEGGSENG-DVAAHQAGHSHGRVDVGPAYVAQ 225
+ G GGSENG +VAA AG S G +VGP V +
Sbjct: 22 EAGPGTAGGSENGSEVAAQPAGLS-GPAEVGPGAVGE 57
>gi|58761546 amine oxidase (flavin containing) domain 2 isoform b
[Homo sapiens]
Length = 852
Score = 28.9 bits (63), Expect = 4.2
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 190 QLGSHVEGGSENG-DVAAHQAGHSHGRVDVGPAYVAQ 225
+ G GGSENG +VAA AG S G +VGP V +
Sbjct: 22 EAGPGTAGGSENGSEVAAQPAGLS-GPAEVGPGAVGE 57
>gi|31542650 MANSC domain containing 1 [Homo sapiens]
Length = 431
Score = 28.9 bits (63), Expect = 4.2
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 148 IPQDLPLVDGKV------VATHSIDSQVPADVCWRDLMEQS-GSGHSPQQLGSHVEGGSE 200
+PQ+ L+ G+ +A H D P D+ WRD + Q GS ++L E ++
Sbjct: 135 LPQEDSLLHGQFSQAVTPLAHHHTDYSKPTDISWRDTLSQKFGSSDHLEKLFKMDEASAQ 194
Query: 201 NGDVAAHQAGHS 212
+A + GHS
Sbjct: 195 L--LAYKEKGHS 204
>gi|22325364 ubiquitin associated protein 2 [Homo sapiens]
Length = 1119
Score = 28.9 bits (63), Expect = 4.2
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 117 LSPTETWMRLFLHDGQGGRSQQSVCILLCSGIPQDLPLVDGKVVATHSIDSQVPADVCWR 176
+S +E+ ++ GGRSQQ++ +G P LP V + +T S + +P+
Sbjct: 632 VSSSESAPGTIMNGHGGGRSQQTLDTPKTTGPPSALPSV-SSLPSTTSCTALLPSTSQHT 690
Query: 177 DLMEQSGSGHSPQQLGSHVEGGSENGDVAAHQAGHSHGRVDVGPAYVAQSLYQGANT 233
+ S L SH S + +++ H+H V+ ++ + + + A T
Sbjct: 691 GDLTSSPLSQLSSSLSSHQSSLSAHAALSS-STSHTHASVESASSHQSSATFSTAAT 746
>gi|4503433 E2F transcription factor 3 [Homo sapiens]
Length = 465
Score = 28.1 bits (61), Expect = 7.1
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 13/155 (8%)
Query: 73 LCREGGAHRDCAGLIKDIRTLVQWLKDGKGRELPETSTKE--ALTALSPTETWMRLFLHD 130
L +GG C GL K++ L Q ++ K EL ++ T + LT S + + D
Sbjct: 246 LSEDGGMLAQCQGLSKEVTELSQ--EEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQD 303
Query: 131 GQGGRSQQSVCILLCSGIPQDLPLVDGKV--VATHSIDSQVPADVCWRDLMEQSGSGHSP 188
+ + +++ P+ V + + H +Q P +V L + HSP
Sbjct: 304 IRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLASTQGPIEVY---LCPEETETHSP 360
Query: 189 QQLGSHVEGGS----ENGDVAAHQAGHSHGRVDVG 219
+ + G+ + D+A+ +GHS V +G
Sbjct: 361 MKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMG 395
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 28.1 bits (61), Expect = 7.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 11 QGHREAYGESRGARVLSAALIGGGEDAEHQLQCQE-ELHSHRLASRRAVAELGTEKRRMR 69
Q ++A G+ + + AL G E A L+ + EL H+ +RR EL E RR++
Sbjct: 1824 QEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEELAVEGRRVQ 1883
>gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 28.1 bits (61), Expect = 7.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 182 SGSGHSPQQLGSHVEGGSENG----DVAAHQAGHSHGRVDVGPAYVAQ 225
+ S HS LGSH+ GG +G D+ AH A ++ +++ PA AQ
Sbjct: 92 AASPHSKMWLGSHLRGGEMSGDPHTDLPAHPAQTTNPELEL-PADPAQ 138
>gi|187936949 solute carrier family 39 (zinc transporter), member 10
[Homo sapiens]
Length = 831
Score = 28.1 bits (61), Expect = 7.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 184 SGHSPQQLGSHVEGGSENGDVAAHQAGHSHG 214
SG + L H +GG ++ AH GHSHG
Sbjct: 452 SGDALLHLLPHSQGGHDHSHQHAHGHGHSHG 482
>gi|55741750 solute carrier family 39 (zinc transporter), member 10
[Homo sapiens]
Length = 831
Score = 28.1 bits (61), Expect = 7.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 184 SGHSPQQLGSHVEGGSENGDVAAHQAGHSHG 214
SG + L H +GG ++ AH GHSHG
Sbjct: 452 SGDALLHLLPHSQGGHDHSHQHAHGHGHSHG 482
>gi|78499633 phospholipase C, eta 2 [Homo sapiens]
Length = 1416
Score = 27.7 bits (60), Expect = 9.3
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 147 GIPQDLPLVDGKVVATHSIDSQVPADVCWRDLMEQSGSGHSPQQLGSHVEGGSENGDVAA 206
G+P V G V ++ Q+ W + +Q+G SP LG EG +
Sbjct: 1281 GLPGGTRRVSGPGVRRDTLTEQLR----WLTVFQQAGDITSPTSLGPAGEGVAGGPGFVR 1336
Query: 207 HQAGHSHGRV 216
+ SH RV
Sbjct: 1337 RSSSRSHSRV 1346
>gi|239747637 PREDICTED: hypothetical protein XP_002347915, partial
[Homo sapiens]
Length = 346
Score = 27.7 bits (60), Expect = 9.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 13 HREAYGESRGARVLSAALIGGGED 36
H EA GE+ G ++L AAL+G G D
Sbjct: 122 HLEAPGETLGLQLLRAALLGRGGD 145
>gi|5032031 RNA binding motif protein 5 [Homo sapiens]
Length = 815
Score = 27.7 bits (60), Expect = 9.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 150 QDLPLVDGKVVATHSIDSQVPADVCWRDLMEQSGSGHS 187
+DL L DG V+ S+ S A W QSG G S
Sbjct: 318 KDLVLSDGNRVSAFSVASTAIAAAQWSSTQSQSGEGGS 355
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,200,485
Number of Sequences: 37866
Number of extensions: 482029
Number of successful extensions: 1358
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1344
Number of HSP's gapped (non-prelim): 20
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.