Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131403 Sequence: fasta or formatted (241aa) NCBI GI: 169205273
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {241aa} PREDICTED: hypothetical protein
alt mRNA {241aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         23           2
 C cysteine            2.5          6           1
 D aspartate           5.0         12           1
 E glutamate           7.1         17           2
 F phenylalanine       0.4          1           1
 G glycine            12.0         29           3
 H histidine           5.8         14           1
 I isoleucine          2.5          6           1
 K lysine              3.7          9           1
 L leucine             9.5         23           2
 M methionine          2.1          5           1
 N asparagine          1.2          3           1
 P proline             3.3          8           1
 Q glutamine           7.1         17           2
 R arginine            7.5         18           2
 S serine              7.5         18           1
 T threonine           4.1         10           1
 V valine              6.2         15           2
 W tryptophan          1.2          3           1
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131403          1.000   PREDICTED: hypothetical protein 
LOC100131403          1.000   PREDICTED: hypothetical protein 
RBMX2                 0.015   RNA binding motif protein, X-linked 2 
RHPN2                 0.013   rhophilin, Rho GTPase binding protein 2 
UBN1                  0.011   ubinuclein 1 
UBN1                  0.011   ubinuclein 1 
ZNF496                0.009   zinc finger protein 496 
KDM1                  0.009   amine oxidase (flavin containing) domain 2 isoform a...
KDM1                  0.009   amine oxidase (flavin containing) domain 2 isoform b...
MANSC1                0.009   MANSC domain containing 1 
UBAP2                 0.009   ubiquitin associated protein 2 
E2F3                  0.006   E2F transcription factor 3 
CEP250                0.006   centrosomal protein 2 
LOC100129129          0.006   PREDICTED: hypothetical protein 
SLC39A10              0.006   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.006   solute carrier family 39 (zinc transporter), member ...
PLCH2                 0.006   phospholipase C, eta 2 
LOC100290173          0.006   PREDICTED: hypothetical protein XP_002347915, parti...
RBM5                  0.006   RNA binding motif protein 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press