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Search of human proteins with 169204628
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169204628 PREDICTED: similar to hCG2045644 [Homo sapiens]
(363 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169204628 PREDICTED: similar to hCG2045644 [Homo sapiens] 752 0.0
gi|169205218 PREDICTED: similar to hCG2045644 [Homo sapiens] 560 e-160
gi|169204294 PREDICTED: similar to hCG2045644 [Homo sapiens] 556 e-159
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 41 0.002
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 40 0.003
gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens] 40 0.004
gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens] 39 0.006
gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens] 39 0.006
gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens] 39 0.006
gi|38683851 round spermatid basic protein 1 [Homo sapiens] 37 0.021
gi|239747122 PREDICTED: hypothetical protein XP_002343916 [Homo ... 37 0.028
gi|239746558 PREDICTED: hypothetical protein XP_002343788 [Homo ... 37 0.028
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 37 0.028
gi|110832843 TBP-associated factor 4 [Homo sapiens] 37 0.036
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.036
gi|239754438 PREDICTED: hypothetical protein [Homo sapiens] 36 0.062
gi|169160624 PREDICTED: hypothetical protein [Homo sapiens] 36 0.062
gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo ... 36 0.062
gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo ... 36 0.062
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 36 0.062
gi|41281612 zinc finger protein 828 [Homo sapiens] 36 0.062
gi|239755899 PREDICTED: hypothetical protein [Homo sapiens] 35 0.080
gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo ... 35 0.080
gi|239742580 PREDICTED: similar to Putative POM121-like protein ... 35 0.080
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 35 0.080
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 35 0.14
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.14
gi|7019535 B-cell linker isoform 1 [Homo sapiens] 34 0.18
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 34 0.23
gi|239756899 PREDICTED: hypothetical protein [Homo sapiens] 34 0.23
>gi|169204628 PREDICTED: similar to hCG2045644 [Homo sapiens]
Length = 363
Score = 752 bits (1941), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MPWMLPHQPTVSGAPVEFDWTGSSFYSLSDLLMHTAKGSKSSASEKLNLPRLLGSRAYCL 60
MPWMLPHQPTVSGAPVEFDWTGSSFYSLSDLLMHTAKGSKSSASEKLNLPRLLGSRAYCL
Sbjct: 1 MPWMLPHQPTVSGAPVEFDWTGSSFYSLSDLLMHTAKGSKSSASEKLNLPRLLGSRAYCL 60
Query: 61 LGTEHINPDELNGPRASPHAGVILGRRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLL 120
LGTEHINPDELNGPRASPHAGVILGRRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLL
Sbjct: 61 LGTEHINPDELNGPRASPHAGVILGRRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLL 120
Query: 121 ESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPAAPWCMYLWRSSPLG 180
ESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPAAPWCMYLWRSSPLG
Sbjct: 121 ESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPAAPWCMYLWRSSPLG 180
Query: 181 SLITGNNQRFRDHPGENRNIYIASIPPLGVPQDMPSPGLAGRRGQCASPGTSRAAAAGRA 240
SLITGNNQRFRDHPGENRNIYIASIPPLGVPQDMPSPGLAGRRGQCASPGTSRAAAAGRA
Sbjct: 181 SLITGNNQRFRDHPGENRNIYIASIPPLGVPQDMPSPGLAGRRGQCASPGTSRAAAAGRA 240
Query: 241 RARTGSPSSDVAAAAGRITLLALCWYPFETGLRREALEVPAVVNERIASCFFSRQPLHPA 300
RARTGSPSSDVAAAAGRITLLALCWYPFETGLRREALEVPAVVNERIASCFFSRQPLHPA
Sbjct: 241 RARTGSPSSDVAAAAGRITLLALCWYPFETGLRREALEVPAVVNERIASCFFSRQPLHPA 300
Query: 301 PRSPSRPPITQSVEKQKATFTFLHRNNGRTQGVAFWSQGSSGCPAPLHPHSPLLLPTASP 360
PRSPSRPPITQSVEKQKATFTFLHRNNGRTQGVAFWSQGSSGCPAPLHPHSPLLLPTASP
Sbjct: 301 PRSPSRPPITQSVEKQKATFTFLHRNNGRTQGVAFWSQGSSGCPAPLHPHSPLLLPTASP 360
Query: 361 LGR 363
LGR
Sbjct: 361 LGR 363
>gi|169205218 PREDICTED: similar to hCG2045644 [Homo sapiens]
Length = 301
Score = 560 bits (1444), Expect = e-160
Identities = 288/364 (79%), Positives = 291/364 (79%), Gaps = 64/364 (17%)
Query: 1 MPWMLPHQPTVSGAPVEFDWTGSSFYSLSDLLMHTAKGSKSSASEKLNLPRLLGSRAYCL 60
MPWMLPHQPTVSGAPVEFDWTGSSFYSLSDLLMHTAKGSKSSASEKLNLPRLLGSRAYCL
Sbjct: 1 MPWMLPHQPTVSGAPVEFDWTGSSFYSLSDLLMHTAKGSKSSASEKLNLPRLLGSRAYCL 60
Query: 61 LGTEHINPDELNGPRASPHAGVILGRRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLL 120
LGTEHINPDELNGPRASPHAGVILGRRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLL
Sbjct: 61 LGTEHINPDELNGPRASPHAGVILGRRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLL 120
Query: 121 ESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPAAPWCMYLWRSSPLG 180
ESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPAAPWC+
Sbjct: 121 ESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPAAPWCI--------- 171
Query: 181 SLITGNNQRFRDHPGENRNIYIASIPPLGVPQDMPSPGLAGR-RGQCASPGTSRAAAAGR 239
AGR R + SP + AA
Sbjct: 172 ------------------------------------AAAAGRARARTGSPSSDVAA---- 191
Query: 240 ARARTGSPSSDVAAAAGRITLLALCWYPFETGLRREALEVPAVVNERIASCFFSRQPLHP 299
AAGRITLLALCWYPFETGLRREALEVPAVVNERIASCFFSRQPLHP
Sbjct: 192 --------------AAGRITLLALCWYPFETGLRREALEVPAVVNERIASCFFSRQPLHP 237
Query: 300 APRSPSRPPITQSVEKQKATFTFLHRNNGRTQGVAFWSQGSSGCPAPLHPHSPLLLPTAS 359
APRSPSRPPITQSVEKQKATFTFLHRNNGRTQGVAFWSQGSSGCPAPLHPHSPLLLPTAS
Sbjct: 238 APRSPSRPPITQSVEKQKATFTFLHRNNGRTQGVAFWSQGSSGCPAPLHPHSPLLLPTAS 297
Query: 360 PLGR 363
PLGR
Sbjct: 298 PLGR 301
>gi|169204294 PREDICTED: similar to hCG2045644 [Homo sapiens]
Length = 301
Score = 556 bits (1434), Expect = e-159
Identities = 287/364 (78%), Positives = 290/364 (79%), Gaps = 64/364 (17%)
Query: 1 MPWMLPHQPTVSGAPVEFDWTGSSFYSLSDLLMHTAKGSKSSASEKLNLPRLLGSRAYCL 60
MPWMLPHQPTVSGAPVEFDWTGSSFYSLSDLLMHTAKGSKSSASEKLNLPRLLGSRAYCL
Sbjct: 1 MPWMLPHQPTVSGAPVEFDWTGSSFYSLSDLLMHTAKGSKSSASEKLNLPRLLGSRAYCL 60
Query: 61 LGTEHINPDELNGPRASPHAGVILGRRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLL 120
LGTEHINPDELNGPRASPHAGVILGRRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLL
Sbjct: 61 LGTEHINPDELNGPRASPHAGVILGRRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLL 120
Query: 121 ESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPAAPWCMYLWRSSPLG 180
ESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPAAPWC+
Sbjct: 121 ESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPAAPWCI--------- 171
Query: 181 SLITGNNQRFRDHPGENRNIYIASIPPLGVPQDMPSPGLAGR-RGQCASPGTSRAAAAGR 239
AGR R + SP + AA
Sbjct: 172 ------------------------------------AAAAGRARARTGSPSSDVAA---- 191
Query: 240 ARARTGSPSSDVAAAAGRITLLALCWYPFETGLRREALEVPAVVNERIASCFFSRQPLHP 299
AAGRITLLALCWYPFETGLRREALEVPAVVNERIASCFFSRQPLHP
Sbjct: 192 --------------AAGRITLLALCWYPFETGLRREALEVPAVVNERIASCFFSRQPLHP 237
Query: 300 APRSPSRPPITQSVEKQKATFTFLHRNNGRTQGVAFWSQGSSGCPAPLHPHSPLLLPTAS 359
APRSPSRP ITQSVEKQKATFTFLHRNNGRTQGVAFWSQGSSGCPAPLHPHSPLLLPTAS
Sbjct: 238 APRSPSRPLITQSVEKQKATFTFLHRNNGRTQGVAFWSQGSSGCPAPLHPHSPLLLPTAS 297
Query: 360 PLGR 363
PLGR
Sbjct: 298 PLGR 301
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 40.8 bits (94), Expect = 0.002
Identities = 69/262 (26%), Positives = 97/262 (37%), Gaps = 55/262 (20%)
Query: 68 PDELNGPRASPHAGVILGRRRRPSHEARRSARLR---PGLRRLQQRERPPRPGLLLESGR 124
P GPRA+P R+ P A+ +A + PG +R + RP + L +
Sbjct: 1805 PKGTPGPRATP-------RKVAPPCLAQPAAPAKVPSPGQQRSRSLHRPAKTSELATLSQ 1857
Query: 125 --------RRDSRRHVTSSQPPLPATQIRPRNPCPAGRAGGHVAG---APVPAAPWCMYL 173
R ++ +SS PA+Q PR P +A G + G +PVP P L
Sbjct: 1858 PPRSATPPARLAKTPSSSSSQTSPASQPLPRKRPPVTQAAGALPGPGASPVPKTPARTLL 1917
Query: 174 WRSSPLGSLITGNNQR------FRDHPGENRNIYIASIPPLGVPQDMPSPGLAGRRGQCA 227
+ QR F P PPL + +P PG GR G A
Sbjct: 1918 AKQH--------KTQRSPVRIPFMQRPARR------GPPPLA--RAVPEPGPRGRAGTEA 1961
Query: 228 SPGTSRAAAAGRARA----RTGSPSSDVAAAAGRITLLALCWYPFETGLRREALEVPAVV 283
PG +R G R +GS SSD + ++T + GLRR E+ +
Sbjct: 1962 GPG-ARGGRLGLVRVASALSSGSESSDRSGFRRQLTFI-----KESPGLRRRRSELSSA- 2014
Query: 284 NERIASCFFSRQPLHPAPRSPS 305
E AS P P P+
Sbjct: 2015 -ESAASAPQGASPRRGRPALPA 2035
Score = 28.9 bits (63), Expect = 7.5
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 27/103 (26%)
Query: 209 GVPQDMPSPGLAGRRGQCASPGTSRAAAAGRARARTGSPSSDVAAAAGRITLLALCWYPF 268
G P+D P G AGR+ P ++R A R +A S++ + AG+
Sbjct: 1413 GPPRDQPG-GPAGRQRPTGRPTSARQAMGHRHKAGGAGRSAEQSRGAGK----------- 1460
Query: 269 ETGLRREALEVPAVVNERIASCFFSRQPLHPAPRSPSRPPITQ 311
R LE+P R P PA + S+P T+
Sbjct: 1461 ----NRAGLELP-----------LGRPPSAPADKDGSKPGRTR 1488
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 40.0 bits (92), Expect = 0.003
Identities = 72/265 (27%), Positives = 93/265 (35%), Gaps = 33/265 (12%)
Query: 62 GTEHINPDELNGPRASPHAGVILGRRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLLE 121
GT P G R S V G+ + EA + + L G RR P P +
Sbjct: 122 GTTRPGPLGQKGLRISAEETVARGK----ATEAPKRSALSAGARRDTSGPTPGTPSPAMA 177
Query: 122 SGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGR-----AGGHVAGAPVPAAPWCMYLWRS 176
R SR T P PA RPR P R A H P PAA R
Sbjct: 178 ----RRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAA-------RR 226
Query: 177 SPLGSLITGNNQRFRDHPGENRNIYIASIPPLGVPQDMPSPGLAGRRGQCASPGTSRAAA 236
P G QR +R++ +S PL P P G A P +
Sbjct: 227 RPSAG---GGLQR-----PASRSLS-SSATPLSSPA-RSGPSARGTPRAPAHPSQPKPKG 276
Query: 237 AGRARA-RTGSPSSDVAAAAGRITLLALCWYPFETGLRREALE-VPAVVNERIASCFFSR 294
R + P D A A G ++ L L+ +A +PA + +C +
Sbjct: 277 LQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLAT 336
Query: 295 QPLHPAPRSPSRPPITQSVEKQKAT 319
PL AP SPS PP Q++ AT
Sbjct: 337 -PLPLAPPSPSAPPSLQTLPSPPAT 360
>gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens]
Length = 1205
Score = 39.7 bits (91), Expect = 0.004
Identities = 37/150 (24%), Positives = 56/150 (37%), Gaps = 18/150 (12%)
Query: 111 ERPPRPGLLLE-------SGRRRDSRRHVTSSQPPLPATQ-IRPRNPCPAGRAGGHVAGA 162
E PP PG ++ +G+ S H+ + PP P Q +P P P G G +
Sbjct: 836 ENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRP 895
Query: 163 PVPAAPWCMYLWRSSPL---GSLITGNNQRFRDHPGENRNIYIASIPPLGVPQDMPSPGL 219
P AP + ++P S TG +Q + + AS P P P
Sbjct: 896 QQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQ-------HQASSPTSSPATSFPPPPS 948
Query: 220 AGRRGQCASPGTSRAAAAGRARARTGSPSS 249
+G Q PG +++A T P +
Sbjct: 949 SGASFQHGGPGAPPSSSAYALPPGTTGPQN 978
>gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 39.3 bits (90), Expect = 0.006
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 18/138 (13%)
Query: 111 ERPPRPGLLLE-------SGRRRDSRRHVTSSQPPLPATQ-IRPRNPCPAGRAGGHVAGA 162
E PP PG ++ +G+ S H+ + PP P Q +P P P G G +
Sbjct: 836 ENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRP 895
Query: 163 PVPAAPWCMYLWRSSPL---GSLITGNNQRFRDHPGENRNIYIASIPPLGVPQDMPSPGL 219
P AP + ++P S TG +Q + + AS P P P
Sbjct: 896 QQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQ-------HQASSPTSSPATSFPPPPS 948
Query: 220 AGRRGQCASPGTSRAAAA 237
+G Q PG +++A
Sbjct: 949 SGASFQHGGPGAPPSSSA 966
>gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens]
Length = 1181
Score = 39.3 bits (90), Expect = 0.006
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 18/138 (13%)
Query: 111 ERPPRPGLLLE-------SGRRRDSRRHVTSSQPPLPATQ-IRPRNPCPAGRAGGHVAGA 162
E PP PG ++ +G+ S H+ + PP P Q +P P P G G +
Sbjct: 797 ENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRP 856
Query: 163 PVPAAPWCMYLWRSSPL---GSLITGNNQRFRDHPGENRNIYIASIPPLGVPQDMPSPGL 219
P AP + ++P S TG +Q + + AS P P P
Sbjct: 857 QQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQ-------HQASSPTSSPATSFPPPPS 909
Query: 220 AGRRGQCASPGTSRAAAA 237
+G Q PG +++A
Sbjct: 910 SGASFQHGGPGAPPSSSA 927
>gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 39.3 bits (90), Expect = 0.006
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 18/138 (13%)
Query: 111 ERPPRPGLLLE-------SGRRRDSRRHVTSSQPPLPATQ-IRPRNPCPAGRAGGHVAGA 162
E PP PG ++ +G+ S H+ + PP P Q +P P P G G +
Sbjct: 836 ENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRP 895
Query: 163 PVPAAPWCMYLWRSSPL---GSLITGNNQRFRDHPGENRNIYIASIPPLGVPQDMPSPGL 219
P AP + ++P S TG +Q + + AS P P P
Sbjct: 896 QQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQ-------HQASSPTSSPATSFPPPPS 948
Query: 220 AGRRGQCASPGTSRAAAA 237
+G Q PG +++A
Sbjct: 949 SGASFQHGGPGAPPSSSA 966
>gi|38683851 round spermatid basic protein 1 [Homo sapiens]
Length = 802
Score = 37.4 bits (85), Expect = 0.021
Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 28/135 (20%)
Query: 75 RASPHAGVI---LGRRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLLESGRRRDSRRH 131
+ PHAGV + R+RR S + R RP + PP L RRR SR+H
Sbjct: 73 KEKPHAGVSPRGVKRQRRSSSGGSQEKRGRPS-------QEPP----LAPPHRRRRSRQH 121
Query: 132 -----VTSSQPPLPA---TQIRPRNPCPAGRAGGHVAGAPVPAAPWCMYLWRSSPL---- 179
T++ P +P + P P P+ G AP+P AP L+ SPL
Sbjct: 122 PGPLPPTNAAPTVPGPVEPLLLPPPPPPSLAPAGPAVAAPLP-APSTSALFTFSPLTVSA 180
Query: 180 -GSLITGNNQRFRDH 193
G G+ +R + H
Sbjct: 181 AGPKHKGHKERHKHH 195
>gi|239747122 PREDICTED: hypothetical protein XP_002343916 [Homo
sapiens]
Length = 598
Score = 37.0 bits (84), Expect = 0.028
Identities = 46/202 (22%), Positives = 74/202 (36%), Gaps = 43/202 (21%)
Query: 129 RRHVTSSQPPLPATQIRPR----NPCPAGRAGGHVAGAPVPAAPWCMYLWRSSPLGSLIT 184
RR S+ P+P++ P P P GR+ ++ PVP P C P+ +
Sbjct: 15 RRLWPCSRRPVPSSSALPLLHAFAPGPQGRSPAGISTEPVPPPPQCPGCDCGEPIAQRLE 74
Query: 185 GNNQRFRDHPGEN-RNIYIASIPPLGVPQDMPSPGLAGRRGQCASPGTSRAAA------- 236
++ FR + ++ +++ L P RGQC G + A A
Sbjct: 75 EGDEAFRQSEYQKAAGLFRSTLARLAQPD----------RGQCLRLGNALARADRLPVAL 124
Query: 237 -----AGRARARTGSPSSDVAAAAGRITLLALCWYPFETGL----------------RRE 275
A R A ++A AG + L P TG R +
Sbjct: 125 GAFCVALRLEALRPEELGELAELAGGLVCPGLRERPLFTGKPGGELEAPALRGAGAERPQ 184
Query: 276 ALEVPAVVNERIASCFFSRQPL 297
AL V V++ ++ CF ++ PL
Sbjct: 185 ALRVNVVLSRKLERCFPAKCPL 206
>gi|239746558 PREDICTED: hypothetical protein XP_002343788 [Homo
sapiens]
Length = 616
Score = 37.0 bits (84), Expect = 0.028
Identities = 46/202 (22%), Positives = 74/202 (36%), Gaps = 43/202 (21%)
Query: 129 RRHVTSSQPPLPATQIRPR----NPCPAGRAGGHVAGAPVPAAPWCMYLWRSSPLGSLIT 184
RR S+ P+P++ P P P GR+ ++ PVP P C P+ +
Sbjct: 33 RRLWPCSRRPVPSSSALPLLHAFAPGPQGRSPAGISTEPVPPPPQCPGCDCGEPIAQRLE 92
Query: 185 GNNQRFRDHPGEN-RNIYIASIPPLGVPQDMPSPGLAGRRGQCASPGTSRAAA------- 236
++ FR + ++ +++ L P RGQC G + A A
Sbjct: 93 EGDEAFRQSEYQKAAGLFRSTLARLAQPD----------RGQCLRLGNALARADRLPVAL 142
Query: 237 -----AGRARARTGSPSSDVAAAAGRITLLALCWYPFETGL----------------RRE 275
A R A ++A AG + L P TG R +
Sbjct: 143 GAFCVALRLEALRPEELGELAELAGGLVCPGLRERPLFTGKPGGELEAPALRGAGAERPQ 202
Query: 276 ALEVPAVVNERIASCFFSRQPL 297
AL V V++ ++ CF ++ PL
Sbjct: 203 ALRVNVVLSRKLERCFPAKCPL 224
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 37.0 bits (84), Expect = 0.028
Identities = 60/240 (25%), Positives = 84/240 (35%), Gaps = 38/240 (15%)
Query: 133 TSSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPAAPWCMYLWRSSPLGSLITGNNQRFRD 192
T SQP P + P + P G G V GAP P + P G T R
Sbjct: 248 TPSQPGPPGPKGEPGSMGPRGENG--VDGAPGP---------KGEP-GHRGTDGAAGPRG 295
Query: 193 HPG-------------ENRNIYIASIPPLGVPQDMPSP-GLAGRRGQCASPGTSRAAAAG 238
PG + R + PP PQ P P G+ G +G+ PG
Sbjct: 296 APGLKGEQGDTVVIDYDGRILDALKGPP--GPQGPPGPPGIPGAKGELGLPGAPGIDGEK 353
Query: 239 RARARTGSPSS-DVAAAAGRITLLALCWYPFETGLRREALEVPA-VVNERIASCFFSRQP 296
+ + G P A G + L P GL+ E E + + E +A +P
Sbjct: 354 GPKGQKGDPGEPGPAGLKGEAGEMGLSGLPGADGLKGEKGESASDSLQESLAQLIV--EP 411
Query: 297 LHPAPRSPSRPPITQSVEKQKATFTFLHRNNGRTQGVAFWSQGSSGCPAPLHPHSPLLLP 356
P P P P Q ++ K + + + A +G SG P P+ P + LP
Sbjct: 412 GPPGPPGPPGPMGLQGIQGPKGL------DGAKGEKGASGERGPSGLPGPVGPPGLIGLP 465
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 36.6 bits (83), Expect = 0.036
Identities = 40/159 (25%), Positives = 53/159 (33%), Gaps = 34/159 (21%)
Query: 112 RPPRPGLLLESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPAAPWCM 171
+P PG ++++ V ++ PP PA P P PA A A P P AP +
Sbjct: 230 KPAAPGTVIQTPP------FVGAAAPPAPAAPSPPAAPAPAAPAA---APPPPPPAPATL 280
Query: 172 YLWRSSPLGSLITGNNQRFRDHPGENRNIYIASIPPLGVPQD--------MPSPGLAGRR 223
P G ++PP Q+ P+P G
Sbjct: 281 ARPPGHPAGPPTAA-----------------PAVPPPAAAQNGGSAGAAPAPAPAAGGPA 323
Query: 224 GQCASPGTSRAAAAGRARARTGSPSSDVAAAAGRITLLA 262
G PG AAAA + SP V AA LA
Sbjct: 324 GVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLA 362
Score = 28.9 bits (63), Expect = 7.5
Identities = 55/213 (25%), Positives = 71/213 (33%), Gaps = 48/213 (22%)
Query: 97 SARLRPGLRRLQQRERPPRPGLLLESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAG 156
+ R RPG QR PP P RR + + P PA ++RP P G AG
Sbjct: 92 AGRARPGGGG-PQRPGPPSP------------RRPLVPAGPAPPAAKLRPP---PEGSAG 135
Query: 157 GHVAGAPVPAAPWCMYLWRSSPLGSLITGNNQRFRDHPGENRNIYIASIPPLGVPQDMPS 216
+ APVPAA +P G G P P
Sbjct: 136 ---SCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPG-------------PGPGPG 179
Query: 217 PGLAGRRGQCASPGTSRAAAAGRARARTGSPS--SDVAAAAGRITLLALCWYPFETGLRR 274
PG PG + A G A+ GS + + AAA ++L+
Sbjct: 180 PG--------PGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVN------NGPAAL 225
Query: 275 EALEVPAVVNERIASCFFSRQPLHPAPRSPSRP 307
L PA I + F PAP +PS P
Sbjct: 226 LPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPP 258
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 36.6 bits (83), Expect = 0.036
Identities = 57/236 (24%), Positives = 82/236 (34%), Gaps = 17/236 (7%)
Query: 87 RRRPSHEARRSARLRPGLRRLQQRERPPRPGLLLESGRRRDSRRHVTSSQPPLPATQIRP 146
R R S RRS + R + R R P R +RR S PP+ + R
Sbjct: 1901 RSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRS 1960
Query: 147 RNPCPAGRAGGHVAGAPVP-----AAPWCMYLWRSSPLGSLITGNNQRFRDHPGENRNIY 201
R P P R +P+ + + RS S +T R R P R
Sbjct: 1961 RTP-PVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSR 2019
Query: 202 IASIPPLGVPQDMPSPGLAGRRGQCASP---------GTSRAAAAGRARARTGSPSSDVA 252
+ P + +P L +R + SP T R A R+ R+ P+
Sbjct: 2020 SRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRS-PPAIRRR 2078
Query: 253 AAAGRITLLALCWYPFETGLRREALEVPAVVNERIASCFFSRQPLHPAPRSPSRPP 308
+A+G + + P T + P +N SC FSR + P P R P
Sbjct: 2079 SASGSSSDRSRSATPPATRNHSGSRTPPVALNSSRMSC-FSRPSMSPTPLDRCRSP 2133
Score = 33.9 bits (76), Expect = 0.23
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 85 GRRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLLESGRRRDSRRHVTSSQPPLPATQI 144
GR R P R + RPG R + +R GR R +RR + S+ P +
Sbjct: 523 GRSRSPQRRGRSRSPQRPGWSRSRNTQR---------RGRSRSARRGRSHSRSPATRGRS 573
Query: 145 RPRNPCPAGRA 155
R R P GR+
Sbjct: 574 RSRTPARRGRS 584
Score = 31.6 bits (70), Expect = 1.2
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
Query: 37 KGSKSSASEKLNLPRLL----GSRAYCLLGTEHINPDELNGPRASPHAG--VILGRRRRP 90
+GS S+ S + P+ GSR+ T+ P R+SP L RR R
Sbjct: 1650 EGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRS 1709
Query: 91 SHEARRSARLRPGLRRLQQRERPPRPGLLLESGRRRDSRRHVTSSQPPLPATQIRPRNPC 150
+ + + P R P P + + R SRR ++S P T R R+P
Sbjct: 1710 ASSSPETRSRTPPRHRRSPSVSSPEP-----AEKSRSSRRRRSASSPRTKTTSRRGRSPS 1764
Query: 151 PAGR 154
P R
Sbjct: 1765 PKPR 1768
Score = 30.4 bits (67), Expect = 2.6
Identities = 78/337 (23%), Positives = 121/337 (35%), Gaps = 51/337 (15%)
Query: 52 LLGSRAYCLLGTEHINPDELNGPRASPH-AGVILGRRRRP-SHEARRSARLRPGLR-RLQ 108
+ GSR L P L R +P +G L R P S R S R P L R +
Sbjct: 2352 IAGSRTAAALA-----PASLTSARMAPALSGANLTSPRVPLSAYERVSGRTSPPLLDRAR 2406
Query: 109 QRERPPRPG---LLLESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAGGH--VAGAP 163
R P P + E SR SQ LP Q +PR+P P+ + +
Sbjct: 2407 SRTPPSAPSQSRMTSERAPSPSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQT 2466
Query: 164 VPAAPWCMYLWRSSPLGSLITGNNQRFRDHPGENRNIYIASIPPLGVP-QDMPSP----- 217
P A +S G++ T + DH G + S+P GVP D+ P
Sbjct: 2467 TPVAG-----SQSLSSGAVATTTSSA-GDHNG------MLSVPAPGVPHSDVGEPPASTG 2514
Query: 218 --------GLAGRRGQCASPGTSRAAAAGRARARTGSPSSDVAAAAGRITLLALCWYPFE 269
L + + +S +S ++++ + + + S SS +++ +L P E
Sbjct: 2515 AQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQP-E 2573
Query: 270 TGLRREALEVPAVVNERIASCFFSRQPLHPAP------RSPSRPPITQSVEKQKATFTFL 323
L+R PA +P P P S S + S ++ +
Sbjct: 2574 VALKRVPSPTPAP-----KEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSS 2628
Query: 324 HRNNGRTQGVAFWSQGSSGCPAPLHPHSPLLLPTASP 360
++ + + S SS P+P P L ASP
Sbjct: 2629 SSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASP 2665
Score = 29.3 bits (64), Expect = 5.8
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 87 RRRPSHEARRSARLRPGLRRLQQRERPPRPGLLLESGRRRD---SRRHVTSSQPPLPATQ 143
R R ARR +R R +RR + P R SGR R +RR + S+ PA +
Sbjct: 614 RSRSRTPARRRSRTRSPVRRRSRSRSPAR-----RSGRSRSRTPARRGRSRSR--TPARR 666
Query: 144 IRPRNPCPAGRAG 156
R R+ PA R+G
Sbjct: 667 GRSRSRTPARRSG 679
Score = 28.9 bits (63), Expect = 7.5
Identities = 41/167 (24%), Positives = 52/167 (31%), Gaps = 20/167 (11%)
Query: 84 LGRRRRPSHEARRSARLRPGLRRLQQRERPP---RPGLLLESGRRRDSRRHVTSSQPPLP 140
+GR R P+ R +R R +R R R P R GR R +R S P P
Sbjct: 481 MGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRP 540
Query: 141 ATQIRPRNPCPAGRAGGHVAGAPVPAAPWCMYLWRSSPLGSLITGNNQRFRDHPGENRNI 200
R RN GR+ G +P R R R
Sbjct: 541 GWS-RSRNTQRRGRSRSARRGRSHSRSP----------------ATRGRSRSRTPARRGR 583
Query: 201 YIASIPPLGVPQDMPSPGLAGRRGQCASPGTSRAAAAGRARARTGSP 247
+ P + R A G SR+ R R+RT SP
Sbjct: 584 SRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSP 630
>gi|239754438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 709
Score = 35.8 bits (81), Expect = 0.062
Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 5/126 (3%)
Query: 206 PPLGVPQDMPSPGLAGRRGQCASPGTSRAAAAGRARARTGSPSSDVAA--AAGRITLLAL 263
PP PQ G+ G SPG R A++ RAR R G+ + + A G + L L
Sbjct: 577 PPANDPQRSQE---GGKPGLLISPGAKRLASSARARRREGAQNKPIKANPPMGAVALRGL 633
Query: 264 CWYPFETGLRREALEVPAVVNERIASCFFSRQPLHPAPRSPSRPPITQSVEKQKATFTFL 323
+ TG A E ++ + HP +P + Q + T L
Sbjct: 634 PEWGLATGAPFRGRGGSAATREPQSAQRNRLRVTHPPESAPEEVRMNQICSQGSKTLLVL 693
Query: 324 HRNNGR 329
GR
Sbjct: 694 EAPGGR 699
>gi|169160624 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 35.8 bits (81), Expect = 0.062
Identities = 41/150 (27%), Positives = 54/150 (36%), Gaps = 18/150 (12%)
Query: 101 RPGLRRLQQRERPPRPGLLLESGRRRDS-RRHVTSSQPPLPATQIRPRNPCPAGRAGGHV 159
RP R R+ PG L + S R P P + PR+ A A G V
Sbjct: 76 RPETRACSARDPDQEPGSLPRLSQLGQSWRXXXXXXXGPHPPRRASPRH---APAAAGGV 132
Query: 160 AGAPVPAAP-WCMYLWRSSPLGS--LITGNNQRFRDHPGENRNIYIASIPPLGVPQDMPS 216
+ P P ++W + G +T R PG+ P G +P+
Sbjct: 133 SMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDR--------PGGGAASPLPA 184
Query: 217 PGLAGR---RGQCASPGTSRAAAAGRARAR 243
P LA R RG+CA G A R R R
Sbjct: 185 PLLASRPRPRGRCAPDGAQAGVGASRLRRR 214
>gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo
sapiens]
Length = 709
Score = 35.8 bits (81), Expect = 0.062
Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 5/126 (3%)
Query: 206 PPLGVPQDMPSPGLAGRRGQCASPGTSRAAAAGRARARTGSPSSDVAA--AAGRITLLAL 263
PP PQ G+ G SPG R A++ RAR R G+ + + A G + L L
Sbjct: 577 PPANDPQRSQE---GGKPGLLISPGAKRLASSARARRREGAQNKPIKANPPMGAVALRGL 633
Query: 264 CWYPFETGLRREALEVPAVVNERIASCFFSRQPLHPAPRSPSRPPITQSVEKQKATFTFL 323
+ TG A E ++ + HP +P + Q + T L
Sbjct: 634 PEWGLATGAPFRGRGGSAATREPQSAQRNRLRVTHPPESAPEEVRMNQICSQGSKTLLVL 693
Query: 324 HRNNGR 329
GR
Sbjct: 694 EAPGGR 699
>gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo
sapiens]
Length = 709
Score = 35.8 bits (81), Expect = 0.062
Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 5/126 (3%)
Query: 206 PPLGVPQDMPSPGLAGRRGQCASPGTSRAAAAGRARARTGSPSSDVAA--AAGRITLLAL 263
PP PQ G+ G SPG R A++ RAR R G+ + + A G + L L
Sbjct: 577 PPANDPQRSQE---GGKPGLLISPGAKRLASSARARRREGAQNKPIKANPPMGAVALRGL 633
Query: 264 CWYPFETGLRREALEVPAVVNERIASCFFSRQPLHPAPRSPSRPPITQSVEKQKATFTFL 323
+ TG A E ++ + HP +P + Q + T L
Sbjct: 634 PEWGLATGAPFRGRGGSAATREPQSAQRNRLRVTHPPESAPGEVRMNQICSQGSKTLLVL 693
Query: 324 HRNNGR 329
GR
Sbjct: 694 EAPGGR 699
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 35.8 bits (81), Expect = 0.062
Identities = 36/100 (36%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 77 SPHAGVILG--------RRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLLESGRRRDS 128
SP AG + G +R A R R R RRL P PG RD+
Sbjct: 75 SPAAGGLRGPWTAAPGRQRADEGAAAARPERQRVWARRLPGSAAAPAPG--------RDA 126
Query: 129 RRHVTSSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPAAP 168
R PP P RPR P PAG AGG AP AP
Sbjct: 127 LR----LPPPPPPPPERPRLP-PAGLAGGPADSAPPSPAP 161
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 35.8 bits (81), Expect = 0.062
Identities = 46/189 (24%), Positives = 65/189 (34%), Gaps = 36/189 (19%)
Query: 68 PDELNGPRASPHAGVILGRRRRP-------SHEARRSARLRPGLRRLQQRERPPRPGLLL 120
P+ L P AS +L P S E+R+SAR R P P
Sbjct: 234 PETLGPPSASSPESPVLAASPEPWGPSPAASPESRKSARTTSPEPRKPSPSESPEPW--- 290
Query: 121 ESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPAAPWCMYLWRSSPLG 180
P PA PR P PA G G P P W+S+P
Sbjct: 291 ----------------KPFPAVSPEPRRPAPAVSPGSWKPGPPGSPRP-----WKSNPSA 329
Query: 181 SLITGNNQRFRDHPGENRNIY--IASIPPLGVPQDMPSPGLAGRRGQCASPGTSRAAAAG 238
S +G + + P + + I S+ P G + PS A + SP + ++ A
Sbjct: 330 S--SGPWKPAKPAPSVSPGPWKPIPSVSP-GPWKPTPSVSSASWKSSSVSPSSWKSPPAS 386
Query: 239 RARARTGSP 247
++G P
Sbjct: 387 PESWKSGPP 395
>gi|239755899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 459
Score = 35.4 bits (80), Expect = 0.080
Identities = 42/147 (28%), Positives = 55/147 (37%), Gaps = 18/147 (12%)
Query: 125 RRDSRRHVTSSQPPL--PATQIRPRNPCPAGRAGGHVAGAPVPAAPWCMYLWRSSPLGSL 182
+ +SR H + Q P + PR P P GR GG G WR L
Sbjct: 82 KSESRTHWVAGQKLNFNPTCALSPRLPQP-GRRGGTELGEDTRG-------WRGRSRELL 133
Query: 183 ITGNNQRFRDHPGENRNIYIASIPPLG----VPQDMPSPGLAGRRGQCASPGTSRAAAAG 238
TG+ +R +I LG P+ +P P G+ C SP T R AA G
Sbjct: 134 STGSCRRREQTRPSPLSISKPRRADLGCWGSAPRALPCPFGRGQLPACCSPATVRPAAQG 193
Query: 239 RA----RARTGSPSSDVAAAAGRITLL 261
A R G+P+ A R+ L
Sbjct: 194 CAQPAPRVAAGTPAVGPTLALRRLDKL 220
>gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo
sapiens]
Length = 459
Score = 35.4 bits (80), Expect = 0.080
Identities = 42/147 (28%), Positives = 55/147 (37%), Gaps = 18/147 (12%)
Query: 125 RRDSRRHVTSSQPPL--PATQIRPRNPCPAGRAGGHVAGAPVPAAPWCMYLWRSSPLGSL 182
+ +SR H + Q P + PR P P GR GG G WR L
Sbjct: 82 KSESRTHWVAGQKLNFNPTCALSPRLPQP-GRRGGTELGEDTRG-------WRGRSRELL 133
Query: 183 ITGNNQRFRDHPGENRNIYIASIPPLG----VPQDMPSPGLAGRRGQCASPGTSRAAAAG 238
TG+ +R +I LG P+ +P P G+ C SP T R AA G
Sbjct: 134 STGSCRRREQTRPSPLSISKPRRADLGCWGSAPRALPCPFGRGQLPACCSPATVRPAAQG 193
Query: 239 RA----RARTGSPSSDVAAAAGRITLL 261
A R G+P+ A R+ L
Sbjct: 194 CAQPAPRVAAGTPAVGPTLALRRLDKL 220
>gi|239742580 PREDICTED: similar to Putative POM121-like protein
1-like [Homo sapiens]
Length = 897
Score = 35.4 bits (80), Expect = 0.080
Identities = 60/228 (26%), Positives = 81/228 (35%), Gaps = 26/228 (11%)
Query: 32 LMHTAKGSKSSASEKLNLPRLLGSR----AYCLLGTEHINPDELNGPRA--SPH-----A 80
L A S SS S L L R ++C L N +GP+A S H A
Sbjct: 388 LKRNASSSSSSHSSTEGLQELKRRRGPASSHCQLAHSSSNTVSEDGPQAVSSGHRCENKA 447
Query: 81 GVILGRRRRPSHEARRSARLRPGLRRLQQRE-------RPPRPGLLLESGRRRDSRRHVT 133
G G+ P + RS RP + E RP RP L S S
Sbjct: 448 GTAPGQTLAPRGGSPRSQASRPHINSALYVEDKAISDCRPSRPSHTLSSLATGASGGPPV 507
Query: 134 SSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPA-APWCMYLWRSSPLGSLITGNNQRFRD 192
S P + A Q RP++ G + A VP+ AP + + P G L + ++
Sbjct: 508 SKAPTMDAQQDRPKSQDCLGLVAPLASAAEVPSTAP--VSGKKHRPPGPLFSSSDPLPAT 565
Query: 193 HPGENRNIYIASIPPLGVPQDMPSPGLAGRRGQCASPGTSRAAAAGRA 240
+ + S+ P G+ R PGTS AAA A
Sbjct: 566 SSHSRDSAQVTSLIPATFTAASRDAGMRRTR-----PGTSAPAAAAAA 608
Score = 29.3 bits (64), Expect = 5.8
Identities = 39/133 (29%), Positives = 51/133 (38%), Gaps = 16/133 (12%)
Query: 32 LMHTAKGSKSSASEKLN-LPRLLG-SRAYCLLGTEHINPDELNGPRA--SPH-----AGV 82
L A S S++E L L R G + ++C L N +GP+A S H AG
Sbjct: 662 LKRNASSSSHSSTEGLQELKRRRGPASSHCQLAHSSSNTVSEDGPQAVSSGHRCENKAGT 721
Query: 83 ILGRRRRPSHEARRSARLRPGLRRLQQRE-------RPPRPGLLLESGRRRDSRRHVTSS 135
G+ P RS RP + E RP RP L S S S
Sbjct: 722 APGQTLAPRGGYPRSQASRPRINSALHVEDKAISDCRPSRPSHTLSSLATGASGGPPVSK 781
Query: 136 QPPLPATQIRPRN 148
P + A Q RP++
Sbjct: 782 APTMDAQQDRPKS 794
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 35.4 bits (80), Expect = 0.080
Identities = 52/185 (28%), Positives = 64/185 (34%), Gaps = 24/185 (12%)
Query: 86 RRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLLESGRRRDSRRHVTSSQPPLPATQIR 145
RRRR + + R S G R Q R P G R +R +P L
Sbjct: 260 RRRRGAGQPRTSPGGADGGPRRQNSVRQRPPDASPSPGSARPAR------EPSLERVGGH 313
Query: 146 PRNPCPAGRAGG---HVAGAPVPAAPWCMYLWRSSPL------GSLITGNNQRFRDHPGE 196
P +P RA AP PAAP SP I G R PG
Sbjct: 314 PTSPAALSRAWASSWESEAAPEPAAPPAAPSPPDSPAEGRLVKAQYIPGAQAATRGLPGR 373
Query: 197 NRNIYIASIPPL----GVPQDMPS--PGLAGRRGQCASPGTSRAAAAGRARARTGSPSSD 250
PPL V Q P P AGRRG+ A R + R +R+ S +S
Sbjct: 374 AAR---RKPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGSPRARKASRSQSETSL 430
Query: 251 VAAAA 255
+ A+
Sbjct: 431 LGRAS 435
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 34.7 bits (78), Expect = 0.14
Identities = 48/178 (26%), Positives = 56/178 (31%), Gaps = 19/178 (10%)
Query: 68 PDELNGPRASPHAGVILGRRRRPSHEARRSARLRPGLRRLQ----------QRERPPRPG 117
P + GPR SP + G +P R PG + L + P G
Sbjct: 961 PPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDG 1020
Query: 118 LLLESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAG-GHVAGAPVPAAPWCMYLWRS 176
L G + P P P P P G AG G PA P
Sbjct: 1021 LPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGP----AGAP 1076
Query: 177 SPLGSLITGNNQRFRDHPGENRNIYIASIPPL----GVPQDMPSPGLAGRRGQCASPG 230
P GS Q R GE A I G P SPG AG++G SPG
Sbjct: 1077 GPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPG 1134
Score = 29.3 bits (64), Expect = 5.8
Identities = 50/193 (25%), Positives = 63/193 (32%), Gaps = 39/193 (20%)
Query: 68 PDELNGPRASPH---AGVILGRRRRPSHEARRSARLRPGLRRLQQRERPP-------RPG 117
P + G R SP A G R P PG ++ PP PG
Sbjct: 856 PQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPG 915
Query: 118 LLLESGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAGGHVAGAPVPAAPWCMYLWRSS 177
SG + D+ + + P Q P P P G AG + GA A P M R S
Sbjct: 916 SPGVSGPKGDAGQ---PGEKGSPGAQGPPGAPGPLGIAG--ITGARGLAGPPGMPGPRGS 970
Query: 178 PLGSLITGNNQRFRDHPGENRNIYIASIPPLGVPQDMPSPGLAGRRGQCASPGTSRAAAA 237
P + G + + PG N GL+G RG G A
Sbjct: 971 PGPQGVKGESGK----PGAN--------------------GLSGERGPPGPQGLPGLAGT 1006
Query: 238 GRARARTGSPSSD 250
R G+P SD
Sbjct: 1007 AGEPGRDGNPGSD 1019
Score = 28.9 bits (63), Expect = 7.5
Identities = 32/103 (31%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 149 PCPAGRAGGHVAGAPVPAAPWCMYLWRSSPLGSLITG--NNQRFRDHPGENRNIYIASIP 206
P AG GG +G P P + R SP G G + PG N N
Sbjct: 839 PGVAGPPGG--SGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNP--GPPG 894
Query: 207 PLGVPQDMPSPGLAGRRGQCASPGTSRAAAAGRARARTGSPSS 249
P G P PG AG G SPG S GSP +
Sbjct: 895 PSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGA 937
Score = 28.5 bits (62), Expect = 9.8
Identities = 49/197 (24%), Positives = 60/197 (30%), Gaps = 30/197 (15%)
Query: 73 GPRASPHAGVILGRRRRPSHEARRSARLRPGLRRLQQRERPP----------RPGLLLES 122
GPR +P G R RP AR G R + PP PG E
Sbjct: 300 GPRGAP------GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEV 353
Query: 123 GRRRDSRRHVTSSQPPLPATQIRPRNPCPAGRAG--------GHVAGAPVPAAPWCMYLW 174
G + Q P Q P G G G + A +P AP M
Sbjct: 354 GPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLM--G 411
Query: 175 RSSPLGSLITGNNQRFRDHPGE-NRNIYIASIPPLGVPQDMPSPGLAGRRGQ---CASPG 230
P G R GE +N P G + PG+ G +G+ SPG
Sbjct: 412 ARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPG 471
Query: 231 TSRAAAAGRARARTGSP 247
A A G+P
Sbjct: 472 EPGANGLPGAAGERGAP 488
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 34.7 bits (78), Expect = 0.14
Identities = 70/268 (26%), Positives = 90/268 (33%), Gaps = 36/268 (13%)
Query: 62 GTEHINPDELNGPRASPHAGVILGRRRRPSHEARRSARLRPGLRRLQQRERPPRPGLLLE 121
GT P G R S V G+ + EA + + L G RR P P +
Sbjct: 122 GTTRPGPLGQKGLRISAEETVARGK----ATEAPKRSALSAGARRDTSGPTPGTPSPAMA 177
Query: 122 SGRRRDSRRHVTSSQPPLPATQIRPRNPCPAGR-----AGGHVAGAPVPAAPWCMYLWRS 176
R SR T P PA RPR P R A H P PAA R
Sbjct: 178 ----RRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAA-------RR 226
Query: 177 SPLGSLITGNNQRFRDHPGENRNIYIASIPPLGVPQDMPSPGLAGRRGQCASPGTSRAAA 236
P G QR +R++ +S PL P P G A P +
Sbjct: 227 RPSAG---GGLQR-----PASRSL-SSSATPLSSPA-RSGPSARGTPRAPAHPSQPKPKG 276
Query: 237 AGRAR-ARTGSPSSDVAAAAGRITLLALCWYPFETGLRREALEVPAVVNERIASCFFSRQ 295
R + P D A A G ++ L P +G + + P + +
Sbjct: 277 LQALRPPQVTPPRKDAAPALGPLSSSPLA-TPSPSGTKARPVPPPDNAATPLPATLPPSP 335
Query: 296 PLHP----APRSPSRPPITQSVEKQKAT 319
PL AP SPS PP Q++ AT
Sbjct: 336 PLATPLPLAPPSPSAPPSLQTLPSPPAT 363
>gi|7019535 B-cell linker isoform 1 [Homo sapiens]
Length = 456
Score = 34.3 bits (77), Expect = 0.18
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 23/101 (22%)
Query: 90 PSHEARRSARLRPGLRRLQQRERPPRPGLLLESGR--------RRDSRRHVT--SSQPPL 139
PS +AR ++ L P L LQ+ + PP+P LLE ++ H T SS PP
Sbjct: 143 PSEKARLTSTL-PALTALQKPQVPPKPKGLLEDEADYVVPVEDNDENYIHPTESSSPPPE 201
Query: 140 PATQI----RPRNPCPA---GRAGGHVAGA-----PVPAAP 168
A + +P + PA G A G +GA P PAAP
Sbjct: 202 KAPMVNRSTKPNSSTPASPPGTASGRNSGAWETKSPPPAAP 242
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 33.9 bits (76), Expect = 0.23
Identities = 55/227 (24%), Positives = 79/227 (34%), Gaps = 40/227 (17%)
Query: 102 PGLRRLQQRERPPRPGLLLESGRRRDSRRH--VTSSQPPLPATQIRPRNPCPAGRAGGHV 159
PG RRL PP P L G D + TSS+ PL ++ P P GRAGG +
Sbjct: 108 PG-RRLSLWAVPPGPPL--SGGLSPDPKPGGAPTSSRRPLLSSPSWG-GPEPEGRAGGGI 163
Query: 160 AGAPVPAAPWCMYLWRSSPLGSLITGNNQRFRDHPGE-NRNIYIASIPPLGVP-QDMPSP 217
G+ P HPG +R + +A PP P + + +
Sbjct: 164 PGSSSP---------------------------HPGTGSRRLKVAPPPPAPKPCKTVTTS 196
Query: 218 GLAGRRGQCASPGTSRAAAAGRARARTGSPSSDVAAAAGRITLLALCWYPFETGLRREAL 277
G G+ A S + G+ R + S+ A+ A T +
Sbjct: 197 GAKAGGGKGAGSRLSWPESEGKPRVKGSKSSAGTGASVSAAATAAAAGGGGSTASTSGGV 256
Query: 278 EVPAVVNERIA-----SCFFSRQPLHPAPRSPSRPPITQSVEKQKAT 319
A +++ S LHP P + S PP+T AT
Sbjct: 257 GAGAGARGKLSPRKGKSKTLDNSDLHPGPPAGSPPPLTLPPTPSPAT 303
>gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 33.9 bits (76), Expect = 0.23
Identities = 57/220 (25%), Positives = 77/220 (35%), Gaps = 26/220 (11%)
Query: 94 ARRSARLRPGLRRLQQRERPPRPGLLLESGRRRDSRRHVTSS--QPPLPATQIRPRNPCP 151
A R P R L G E + R+ + + S +P P T +RP P P
Sbjct: 84 AAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAP 143
Query: 152 AGRAGGHVA------GAPVPAAPWCMYLWRSSPLGSLITGNNQRFRDHPGENRNIYIASI 205
G GG VA G+P P R SP + + Q H R
Sbjct: 144 -GVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSP--AQLPPTYQLLGYHRAPPR------A 194
Query: 206 PPLGVPQDMPSPGLAGRRGQCASPGTSRAAAAGRARARTGSPSSDVAAAAGRITLLALCW 265
P G + + A RR + A+ A R+RAR P+ AAGR L
Sbjct: 195 SPGGWNTETLNTEDARRRARSATQAPPLALVPARSRAR---PAHLRVRAAGRSRHRVL-- 249
Query: 266 YPFETGLRREALEVPAVVNERIASCFFSRQPLHPAPRSPS 305
L RE+ + A + +R+ L PR PS
Sbjct: 250 ----LALSRESRHLSGARERGRAGRYSTRRNLDSLPRKPS 285
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,777,384
Number of Sequences: 37866
Number of extensions: 1046033
Number of successful extensions: 6676
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 295
Number of HSP's that attempted gapping in prelim test: 5889
Number of HSP's gapped (non-prelim): 1086
length of query: 363
length of database: 18,247,518
effective HSP length: 104
effective length of query: 259
effective length of database: 14,309,454
effective search space: 3706148586
effective search space used: 3706148586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.