Guide to the Human Genome
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Name: LOC100132839 Sequence: fasta or formatted (105aa) NCBI GI: 169201198
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {105aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         11           2
 C cysteine            0.0          0           0
 D aspartate           0.0          0           0
 E glutamate           3.8          4           2
 F phenylalanine       0.0          0           0
 G glycine             8.6          9           1
 H histidine           3.8          4           1
 I isoleucine          0.0          0           0
 K lysine              1.9          2           1
 L leucine            16.2         17           3
 M methionine          1.0          1           1
 N asparagine          1.0          1           1
 P proline            27.6         29           7
 Q glutamine           3.8          4           1
 R arginine            6.7          7           2
 S serine              9.5         10           1
 T threonine           3.8          4           1
 V valine              1.0          1           1
 W tryptophan          1.0          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132839          1.000   PREDICTED: hypothetical protein 
SF3A2                 0.151   splicing factor 3a, subunit 2 
FMN2                  0.141   formin 2 
WASF1                 0.136   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.136   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.136   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.136   Wiskott-Aldrich syndrome protein family member 1 [Hom...
KDM6B                 0.136   lysine (K)-specific demethylase 6B 
MLL4                  0.136   myeloid/lymphoid or mixed-lineage leukemia 4 
GGN                   0.131   gametogenetin 
FLJ22184              0.121   PREDICTED: hypothetical protein FLJ22184 
PELP1                 0.121   proline, glutamic acid and leucine rich protein 1 [...
RCOR2                 0.121   REST corepressor 2 
RBM27                 0.121   RNA binding motif protein 27 
PRR12                 0.121   proline rich 12 
FLJ22184              0.121   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.121   PREDICTED: hypothetical protein LOC80164 
INF2                  0.121   inverted formin 2 isoform 2 
INF2                  0.121   inverted formin 2 isoform 1 
ASAP2                 0.116   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
ASAP2                 0.116   ArfGAP with SH3 domain, ankyrin repeat and PH domain ...
ENAH                  0.116   enabled homolog isoform a 
ENAH                  0.116   enabled homolog isoform b 
B4GALNT4              0.116   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
ATOH8                 0.111   atonal homolog 8 
FMN1                  0.106   formin 1 
RNASEN                0.106   ribonuclease III, nuclear isoform 2 
RNASEN                0.106   ribonuclease III, nuclear isoform 1 
FMNL1                 0.106   formin-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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