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Search of human proteins with 169179961
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169179961 PREDICTED: similar to ATP synthase, H+
transporting, mitochondrial F0 complex, subunit F2 [Homo sapiens]
(85 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169179961 PREDICTED: similar to ATP synthase, H+ transporting... 180 2e-46
gi|89030419 PREDICTED: similar to ATP synthase, H+ transporting,... 180 2e-46
gi|89029850 PREDICTED: similar to ATP synthase, H+ transporting,... 180 2e-46
gi|51479129 ATP synthase, H+ transporting, mitochondrial F0 comp... 126 4e-30
gi|4757812 ATP synthase, H+ transporting, mitochondrial F0 compl... 121 1e-28
gi|85794908 ATP synthase, H+ transporting, mitochondrial F0 comp... 52 8e-08
gi|239754433 PREDICTED: similar to ATP synthase, H+ transporting... 51 2e-07
gi|51479132 ATP synthase, H+ transporting, mitochondrial F0 comp... 47 2e-06
gi|154800467 lung cancer-related protein 8 isoform b [Homo sapiens] 29 0.70
gi|21361664 lung cancer-related protein 8 isoform a [Homo sapiens] 29 0.70
gi|164519026 galactosidase, beta 1 like 3 [Homo sapiens] 27 3.5
gi|154800469 lung cancer-related protein 8 isoform c [Homo sapiens] 26 5.9
>gi|169179961 PREDICTED: similar to ATP synthase, H+ transporting,
mitochondrial F0 complex, subunit F2 [Homo sapiens]
Length = 85
Score = 180 bits (457), Expect = 2e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MTSVIPVKDKKHLEVKLGELPSWILMQDRVIAAGIQRGYYWYYNKYINVKKGSISGLTMV 60
MTSVIPVKDKKHLEVKLGELPSWILMQDRVIAAGIQRGYYWYYNKYINVKKGSISGLTMV
Sbjct: 1 MTSVIPVKDKKHLEVKLGELPSWILMQDRVIAAGIQRGYYWYYNKYINVKKGSISGLTMV 60
Query: 61 LAGYMLFRYCLSYKELKHKRLCRYH 85
LAGYMLFRYCLSYKELKHKRLCRYH
Sbjct: 61 LAGYMLFRYCLSYKELKHKRLCRYH 85
>gi|89030419 PREDICTED: similar to ATP synthase, H+ transporting,
mitochondrial F0 complex, subunit F2 [Homo sapiens]
Length = 85
Score = 180 bits (457), Expect = 2e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MTSVIPVKDKKHLEVKLGELPSWILMQDRVIAAGIQRGYYWYYNKYINVKKGSISGLTMV 60
MTSVIPVKDKKHLEVKLGELPSWILMQDRVIAAGIQRGYYWYYNKYINVKKGSISGLTMV
Sbjct: 1 MTSVIPVKDKKHLEVKLGELPSWILMQDRVIAAGIQRGYYWYYNKYINVKKGSISGLTMV 60
Query: 61 LAGYMLFRYCLSYKELKHKRLCRYH 85
LAGYMLFRYCLSYKELKHKRLCRYH
Sbjct: 61 LAGYMLFRYCLSYKELKHKRLCRYH 85
>gi|89029850 PREDICTED: similar to ATP synthase, H+ transporting,
mitochondrial F0 complex, subunit F2 [Homo sapiens]
Length = 85
Score = 180 bits (457), Expect = 2e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MTSVIPVKDKKHLEVKLGELPSWILMQDRVIAAGIQRGYYWYYNKYINVKKGSISGLTMV 60
MTSVIPVKDKKHLEVKLGELPSWILMQDRVIAAGIQRGYYWYYNKYINVKKGSISGLTMV
Sbjct: 1 MTSVIPVKDKKHLEVKLGELPSWILMQDRVIAAGIQRGYYWYYNKYINVKKGSISGLTMV 60
Query: 61 LAGYMLFRYCLSYKELKHKRLCRYH 85
LAGYMLFRYCLSYKELKHKRLCRYH
Sbjct: 61 LAGYMLFRYCLSYKELKHKRLCRYH 85
>gi|51479129 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F2 isoform 2b [Homo sapiens]
Length = 88
Score = 126 bits (316), Expect = 4e-30
Identities = 64/88 (72%), Positives = 70/88 (79%), Gaps = 3/88 (3%)
Query: 1 MTSVIPVKDKKHLEVKLGELPSWILMQD---RVIAAGIQRGYYWYYNKYINVKKGSISGL 57
M SV+PVKDKK LEVKLGELPSWILM+D I QRGYY YYNKYINVKKGSISG+
Sbjct: 1 MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGI 60
Query: 58 TMVLAGYMLFRYCLSYKELKHKRLCRYH 85
TMVLA Y+LF Y SYK LKH+RL +YH
Sbjct: 61 TMVLACYVLFSYSFSYKHLKHERLRKYH 88
>gi|4757812 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F2 isoform 2a [Homo sapiens]
Length = 94
Score = 121 bits (303), Expect = 1e-28
Identities = 61/84 (72%), Positives = 67/84 (79%), Gaps = 3/84 (3%)
Query: 5 IPVKDKKHLEVKLGELPSWILMQD---RVIAAGIQRGYYWYYNKYINVKKGSISGLTMVL 61
+PVKDKK LEVKLGELPSWILM+D I QRGYY YYNKYINVKKGSISG+TMVL
Sbjct: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVL 70
Query: 62 AGYMLFRYCLSYKELKHKRLCRYH 85
A Y+LF Y SYK LKH+RL +YH
Sbjct: 71 ACYVLFSYSFSYKHLKHERLRKYH 94
>gi|85794908 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F2 isoform 2d [Homo sapiens]
Length = 49
Score = 52.4 bits (124), Expect = 8e-08
Identities = 24/28 (85%), Positives = 26/28 (92%)
Query: 1 MTSVIPVKDKKHLEVKLGELPSWILMQD 28
M SV+PVKDKK LEVKLGELPSWILM+D
Sbjct: 1 MASVVPVKDKKLLEVKLGELPSWILMRD 28
>gi|239754433 PREDICTED: similar to ATP synthase, H+ transporting,
mitochondrial F0 complex, subunit F2 [Homo sapiens]
Length = 79
Score = 50.8 bits (120), Expect = 2e-07
Identities = 27/44 (61%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 1 MTSVIPVKDKKHLEVKLGELPSWILMQD---RVIAAGIQRGYYW 41
+ SV+PVKDKK LEVKLGELPSWILM D I QR + W
Sbjct: 31 IASVVPVKDKKLLEVKLGELPSWILMGDFSPSGIFGAFQREHEW 74
>gi|51479132 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F2 isoform 2c [Homo sapiens]
Length = 55
Score = 47.4 bits (111), Expect = 2e-06
Identities = 21/24 (87%), Positives = 23/24 (95%)
Query: 5 IPVKDKKHLEVKLGELPSWILMQD 28
+PVKDKK LEVKLGELPSWILM+D
Sbjct: 11 VPVKDKKLLEVKLGELPSWILMRD 34
>gi|154800467 lung cancer-related protein 8 isoform b [Homo sapiens]
Length = 573
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 49 VKKGSISGLTMVLAGYMLFRYCLSYKELKHKRLCR 83
++K G+TM+ GY F C S+ + K+LCR
Sbjct: 513 IRKSGFGGITMLFTGY--FVLCCSWSFRRLKKLCR 545
>gi|21361664 lung cancer-related protein 8 isoform a [Homo sapiens]
Length = 609
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 49 VKKGSISGLTMVLAGYMLFRYCLSYKELKHKRLCR 83
++K G+TM+ GY F C S+ + K+LCR
Sbjct: 549 IRKSGFGGITMLFTGY--FVLCCSWSFRRLKKLCR 581
>gi|164519026 galactosidase, beta 1 like 3 [Homo sapiens]
Length = 653
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 14 EVKLGELPSWILMQDRVIAAGIQRGYYWYYNKYIN 48
E+ LG LPSW+L R++ + + KY +
Sbjct: 168 EMDLGGLPSWLLQDPRLLLRTTNKSFIEAVEKYFD 202
>gi|154800469 lung cancer-related protein 8 isoform c [Homo sapiens]
Length = 583
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 49 VKKGSISGLTMVLAGYMLFRYCLSYKELKHKR 80
++K G+TM+ GY + S++ LK +R
Sbjct: 549 IRKSGFGGITMLFTGYFVLCCSWSFRRLKLQR 580
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.141 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,055,246
Number of Sequences: 37866
Number of extensions: 97497
Number of successful extensions: 212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 12
length of query: 85
length of database: 18,247,518
effective HSP length: 57
effective length of query: 28
effective length of database: 16,089,156
effective search space: 450496368
effective search space used: 450496368
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.