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Search of human proteins with 11128029
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11128029 protocadherin gamma subfamily B, 6 isoform 1
precursor [Homo sapiens]
(930 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 1849 0.0
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs... 1595 0.0
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 1442 0.0
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 1371 0.0
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 1321 0.0
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 1303 0.0
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 1288 0.0
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs... 1233 0.0
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs... 1197 0.0
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs... 1123 0.0
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs... 1073 0.0
gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precurs... 1050 0.0
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs... 1038 0.0
gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precurs... 983 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 926 0.0
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 925 0.0
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 924 0.0
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 917 0.0
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 909 0.0
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 905 0.0
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 904 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 903 0.0
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs... 903 0.0
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 902 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 900 0.0
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs... 885 0.0
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs... 815 0.0
gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precurs... 803 0.0
gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precurs... 801 0.0
gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precurs... 690 0.0
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 1849 bits (4790), Expect = 0.0
Identities = 930/930 (100%), Positives = 930/930 (100%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
Query: 781 CSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 840
CSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
Sbjct: 781 CSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 840
Query: 841 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 900
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
Sbjct: 841 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 900
Query: 901 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 1595 bits (4130), Expect = 0.0
Identities = 806/806 (100%), Positives = 806/806 (100%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
Query: 781 CSVSPGALIPPHGGEDLTSHPETLTS 806
CSVSPGALIPPHGGEDLTSHPETLTS
Sbjct: 781 CSVSPGALIPPHGGEDLTSHPETLTS 806
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1442 bits (3734), Expect = 0.0
Identities = 730/933 (78%), Positives = 804/933 (86%), Gaps = 7/933 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MGGSCAQRRRAGPRQVLFPLLLPLFYPTL EPIRYSIPEELAKGSVVGNLAKDLGLSVLD
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
VSAR+LRVSAEKLHFSVDA+SGDLLVK+RIDREQICKERRRCELQLEAVVENPLNIFHVI
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
VVIEDVNDHAPQF K EI+LEI ES S G L+ A DPDI++NS+ Y+++ N YFSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+ + N DGGKYPEL L+K LDRE Q +H L+LTALDGGDPPRS TA I I V D NDNPP
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VFS+D YR+SL E++PPG+ +L+V ATDQDEG+N+EI Y F A +H+FSLD TG
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
I Q DFE+VERYT+ +EAKD G LST+CKVI+E++DENDNSPEIIITSLSDQI+E+S
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
PPG+VVALFKTRD D G NGEVRC++ +PFKI+SSSNNYYKLVTD ALDREQTPEYNV
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TI ATDRGKPPLSSS++ITL++ D+NDNAPVF Q++Y+VHV ENN PGASIAQVSASDPD
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
GLNG +SYS++ASDLE +SSYVSVSAQSGVVFAQRAFDHEQLR F LTLQARD GSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
LSANVSLRVLVGDRNDNAPRVLYPALGPDGSA FD VPR+A+PGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFAD+LQE+LPD SD P SD QAE+QFYLVVALALISVLFLLAVILAIALRLR+S S
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCI-AHTGTKEFNFLKCSVPLHSNEDM 779
P DCF LC KSGPV PPNYSEGTLPY+YN C+ EFNF + +D
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
Query: 780 V--CSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 837
+ S+ +++ P + + + L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 781 LNKDSMLLASILTP----SVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 836
Query: 838 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 897
NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 837 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 896
Query: 898 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 897 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1371 bits (3549), Expect = 0.0
Identities = 690/930 (74%), Positives = 769/930 (82%), Gaps = 7/930 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG + RA VLF LL LF P L E IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ RKLRVS+EK +F+V AESG+LLV +R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
V IED+NDH P+F + L+I ESA GTR L+ A D DI +NS++ YK++ NP FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+++ DG KYPEL+LEK LDRE+Q H L+LTALDGG PP S T + I V D NDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VF+RD YR+SL EN+PPG+ VLQV+ATDQDEG+N+EI Y F T Q +FSL+ K+G
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
I + DFE+ + Y+M VE +DGGGL QC V I I DENDNSPE+ SL + ILEN+
Sbjct: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
PG ++AL K D D G NGEV C ++ ++PFKI SSS N YKLVTDG LDREQTPEYNV
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TI ATDRGKPPLSSS S+ L++ D+NDNAPVF Q SY+V V ENNPPGASIAQV ASD D
Sbjct: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LGLNG +SYSI+ASDLEPLA++SYVS+SAQSGVVFAQRAFD+EQLR F LTLQARD GSP
Sbjct: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
LSANVSLRVLVGDRNDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGH
Sbjct: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFAD+LQE+LPD++DRPV SDPQAELQFYLVVALALISVLFLLAVILA+ALRLRRS S
Sbjct: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
PA W CF PGLCVKSGPVVPPNYS+GTLPYSYNLC+AHTG EFNFLKCS L S +D++
Sbjct: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDIL 776
Query: 781 CSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 840
C S GAL P + TSHPE QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
Sbjct: 777 CGDSSGALFPLCNSSESTSHPEL---QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 833
Query: 841 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 900
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
Sbjct: 834 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 893
Query: 901 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 894 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1321 bits (3418), Expect = 0.0
Identities = 669/930 (71%), Positives = 761/930 (81%), Gaps = 7/930 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG + RA VLF LL LF P L E IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ RKLRVS+EK +F+V AESG+LLV +R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
V IED+NDH P+F + L+I ESA GTR L A D DI N++++Y+++ + +FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+ + SDG KYPE+ L+ LDRE+Q+S+ L LTALD G PP S+TA I + V D NDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VFS+D YR+SLSEN+ PG+ VLQVTATDQDEGVNAEI + F +Q T+ F L+ TG
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
I + DFE+V+ Y++ +EA+DGGG+ QC V +E++DENDN+PE+I SL + I+E++
Sbjct: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
G +AL K RD D NGEV C +E D+PFKI +SS N YKLVTD LDREQ PEYN+
Sbjct: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
T+ ATDRGKPPLSSS SITL++ D+NDNAPVF Q+SY+VHVAENNPPGASI+QV ASDPD
Sbjct: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LG NG +SY I+ASDLE +SSYVS+SA+SGVVFAQRAFDHEQLRAF LTLQARD GSP
Sbjct: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
LSANVSLRVLV DRNDNAPRVLYPALGPDGSA FDMVP +AEPGYLVTKVVAVDADSGH
Sbjct: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATL
Sbjct: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFAD+LQE+LPD++DRP SD QAELQFYLVVALALISVLFL+A+ILAIALRLRRS S
Sbjct: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
PA+W CF PGLCVKS VVPPNYSEGTLPYSYNLC+AHTG EFNFLKCS L S +D++
Sbjct: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDIL 778
Query: 781 CSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 840
C S GAL P +LTSH QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
Sbjct: 779 CGDSSGALFPLCNSSELTSH-----QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 833
Query: 841 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 900
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
Sbjct: 834 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 893
Query: 901 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 894 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 1303 bits (3373), Expect = 0.0
Identities = 661/917 (72%), Positives = 743/917 (81%), Gaps = 1/917 (0%)
Query: 15 QVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
QVL P LL LF L IRYSIPEELAK SVVGNLAKDLGLSV D+ ARKLRVSAEK +
Sbjct: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
Query: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
F+V+ ESGDLLV +RIDREQIC ++ C L + V ENPLNIF++ V+++D+ND+ P F
Sbjct: 75 FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
Query: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
+ +I+L+I ES GT LDPA D D+ NS++ Y +N N YF L + DG KYPEL
Sbjct: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
Query: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
L+ LDREE H L+LTA+DGGDPP+S T I I V D NDNPPVFS+D YR++L E+
Sbjct: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
Query: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
+PPG VLQVTATD+DEG+NAEI Y F + + KH F+L+EKTG I DFE
Sbjct: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
Query: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
YT+ +EAKD G L+ C + +EILD+ND +PE+I+TS+S + E+SPPG V+AL KTRD
Sbjct: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
Query: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
D G NGEV C + + F + SSS NYYKLVTDGALDRE+ PEYN+TI ATD GKPPLSS
Sbjct: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
Query: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
S +TL+++D+NDNAPVF QTSY+VHVAENNPPGASIAQ+SASDPDLG +G +SYSIVAS
Sbjct: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
Query: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
DL+P + SYVSVSAQSGVVFAQRAFDHEQLRAF LTLQARD GSP LSANVSLRVLVGD
Sbjct: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
Query: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
NDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FAD+LQE+LPD
Sbjct: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
Query: 675 LSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCVK 734
LSDR SDPQA+LQFYLVVALALISVLF LAVILAI+LRLR S WDCF PGL K
Sbjct: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
Query: 735 SGPVVPPNYSEGTLPYSYNLCIAHTGTK-EFNFLKCSVPLHSNEDMVCSVSPGALIPPHG 793
GP V PNYSEGTLPYSYNLC+A K EFNFL + L +D+VC + HG
Sbjct: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQNTNHG 794
Query: 794 GEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 853
+ +T+ QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS
Sbjct: 795 AAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 854
Query: 854 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 913
ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA
Sbjct: 855 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 914
Query: 914 PAGGNGNKKKSGKKEKK 930
PAGGNGNKKKSGKKEKK
Sbjct: 915 PAGGNGNKKKSGKKEKK 931
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 1288 bits (3333), Expect = 0.0
Identities = 666/917 (72%), Positives = 742/917 (80%), Gaps = 3/917 (0%)
Query: 15 QVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
QVLFP LL LF +S+ IRY+IPEELA GS VG LAKDLGLSV ++ RKLRVSAE +
Sbjct: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
Query: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
F+V ESGDLLV RIDRE+IC + C L+ E V ENP+N+FHV+VVI+D+ND+AP+F
Sbjct: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
Query: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
K I LEI ESA G + SLD A D D+ NS+K Y IN N YFSL + + DG KYP L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
Query: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
LEK LDRE Q SH LILTA+DGGDPP S T HI I V D NDN PVFS++ YR+SL EN
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
Query: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
+P G+ VL+V ATDQDEG+NAEI Y F ++ ST +F+L+ TG I N + DFE+ R
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSR 310
Query: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
Y + VEAKDGG + C V IEI+DENDN+PE+ S S+QI E+S G V+AL K RD
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Query: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
D G NG V C + ++PFK+ S+S NYYKLV GAL+REQT +YNVTI+ATD+GKP LSS
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
Query: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
SITL+++DINDNAPVF Q SYVVHV+ENNPPGASIAQVSASDPDLG NG +SYSI+AS
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
Query: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
DLEP + SYVSVS QSGVVFAQRAFDHEQLRAF LTLQARD GSP LSANVSLRVLVGD
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
Query: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
NDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FAD+LQE+LPD
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
Query: 675 LSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCVK 734
LSDRP SDPQ ELQFYLVVALALISVLFLLAVILAIALRLRRS S T CF GLC K
Sbjct: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
Query: 735 SGPVVPPNYSEGTLPYSYNLCIA-HTGTKEFNFLKCSVPLHSNEDMVCSVSPGALIPPHG 793
SGP VPPN+SEGTLPYSYNLCIA H+ EFN L + + +D++C + +
Sbjct: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790
Query: 794 GEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 853
+ P + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS
Sbjct: 791 DHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 850
Query: 854 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 913
ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA
Sbjct: 851 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 910
Query: 914 PAGGNGNKKKSGKKEKK 930
PAGGNGNKKKSGKKEKK
Sbjct: 911 PAGGNGNKKKSGKKEKK 927
>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1233 bits (3191), Expect = 0.0
Identities = 632/931 (67%), Positives = 727/931 (78%), Gaps = 3/931 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG S R AG R++LF LL L LSEPIRY+IPEEL +GS+VGNLAKDLG V D
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ R LRV AEK F+V E+G+LLV +RIDRE+IC ++ C L+ E V E PLN FHV
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
V+I+D+ND+ P F + LEI E A G +L+ A DPD+ +NS++ Y ++ +P+FSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+ + N DG +YPEL L+ LDREEQ H L+LTA+DGG+P RS T I + V D NDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VF++D YR++++ENLP GS VL+V A D DEG+NAEI Y F + + + +F LD KTG
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
+ DFE+ + YT+ VEAKDGG + CKV I+I DENDN+PEI + S S I E++
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
G VAL KT DLD G NGE+ C ++ + PFKI + N Y+LVTDGALDREQ PEYNV
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TI ATD+G PPLSSS++ITL++ D+NDN PVF Q SY VHVAENNPPGASIA V ASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LG NG +SY IVASDLEP +SSYVSVSA+SGVVFAQRAFDHEQLRAF LTLQARD GSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
TLSANVSLRVLV DRNDNAP VLYPALGP+GSA FDMVPRSAEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HL+FAD+LQEI PDLSDRP SDPQAELQF+LVVALALISVLFLLAVILAI+LRLR S
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIA-HTGTKEFNFLKCSVPLHSNEDM 779
PAT F PG+C K+ P V P YSE TLPYSYN C A H+ EF FL + +D+
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 780 VCSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 839
+C + + ++ S+ L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
Sbjct: 781 LC--DEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 838
Query: 840 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 899
QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN
Sbjct: 839 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 898
Query: 900 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 899 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
[Homo sapiens]
Length = 808
Score = 1197 bits (3096), Expect = 0.0
Identities = 602/767 (78%), Positives = 666/767 (86%), Gaps = 1/767 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MGGSCAQRRRAGPRQVLFPLLLPLFYPTL EPIRYSIPEELAKGSVVGNLAKDLGLSVLD
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
VSAR+LRVSAEKLHFSVDA+SGDLLVK+RIDREQICKERRRCELQLEAVVENPLNIFHVI
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
VVIEDVNDHAPQF K EI+LEI ES S G L+ A DPDI++NS+ Y+++ N YFSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+ + N DGGKYPEL L+K LDRE Q +H L+LTALDGGDPPRS TA I I V D NDNPP
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VFS+D YR+SL E++PPG+ +L+V ATDQDEG+N+EI Y F A +H+FSLD TG
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
I Q DFE+VERYT+ +EAKD G LST+CKVI+E++DENDNSPEIIITSLSDQI+E+S
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
PPG+VVALFKTRD D G NGEVRC++ +PFKI+SSSNNYYKLVTD ALDREQTPEYNV
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TI ATDRGKPPLSSS++ITL++ D+NDNAPVF Q++Y+VHV ENN PGASIAQVSASDPD
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
GLNG +SYS++ASDLE +SSYVSVSAQSGVVFAQRAFDHEQLR F LTLQARD GSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
LSANVSLRVLVGDRNDNAPRVLYPALGPDGSA FD VPR+A+PGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFAD+LQE+LPD SD P SD QAE+QFYLVVALALISVLFLLAVILAIALRLR+S S
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCI-AHTGTKEFNF 766
P DCF LC KSGPV PPNYSEGTLPY+YN C+ EFNF
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNF 767
>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 1123 bits (2905), Expect = 0.0
Identities = 566/805 (70%), Positives = 647/805 (80%), Gaps = 4/805 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG + RA VLF LL LF P L E IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ RKLRVS+EK +F+V AESG+LLV +R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
V IED+NDH P+F + L+I ESA GTR L+ A D DI +NS++ YK++ NP FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+++ DG KYPEL+LEK LDRE+Q H L+LTALDGG PP S T + I V D NDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VF+RD YR+SL EN+PPG+ VLQV+ATDQDEG+N+EI Y F T Q +FSL+ K+G
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
I + DFE+ + Y+M VE +DGGGL QC V I I DENDNSPE+ SL + ILEN+
Sbjct: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
PG ++AL K D D G NGEV C ++ ++PFKI SSS N YKLVTDG LDREQTPEYNV
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TI ATDRGKPPLSSS S+ L++ D+NDNAPVF Q SY+V V ENNPPGASIAQV ASD D
Sbjct: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LGLNG +SYSI+ASDLEPLA++SYVS+SAQSGVVFAQRAFD+EQLR F LTLQARD GSP
Sbjct: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
LSANVSLRVLVGDRNDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGH
Sbjct: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFAD+LQE+LPD++DRPV SDPQAELQFYLVVALALISVLFLLAVILA+ALRLRRS S
Sbjct: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
PA W CF PGLCVKSGPVVPPNYS+GTLPYSYNLC+AHTG EFNFLKCS L S +D++
Sbjct: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDIL 776
Query: 781 CSVSPGALIPPHGGEDLTSHPETLT 805
C S GAL P + TSHPE ++
Sbjct: 777 CGDSSGALFPLCNSSESTSHPELVS 801
>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 1073 bits (2774), Expect = 0.0
Identities = 545/800 (68%), Positives = 637/800 (79%), Gaps = 2/800 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG + RA VLF LL LF P L E IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ RKLRVS+EK +F+V AESG+LLV +R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
V IED+NDH P+F + L+I ESA GTR L A D DI N++++Y+++ + +FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+ + SDG KYPE+ L+ LDRE+Q+S+ L LTALD G PP S+TA I + V D NDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VFS+D YR+SLSEN+ PG+ VLQVTATDQDEGVNAEI + F +Q T+ F L+ TG
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
I + DFE+V+ Y++ +EA+DGGG+ QC V +E++DENDN+PE+I SL + I+E++
Sbjct: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
G +AL K RD D NGEV C +E D+PFKI +SS N YKLVTD LDREQ PEYN+
Sbjct: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
T+ ATDRGKPPLSSS SITL++ D+NDNAPVF Q+SY+VHVAENNPPGASI+QV ASDPD
Sbjct: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LG NG +SY I+ASDLE +SSYVS+SA+SGVVFAQRAFDHEQLRAF LTLQARD GSP
Sbjct: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
LSANVSLRVLV DRNDNAPRVLYPALGPDGSA FDMVP +AEPGYLVTKVVAVDADSGH
Sbjct: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATL
Sbjct: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HLVFAD+LQE+LPD++DRP SD QAELQFYLVVALALISVLFL+A+ILAIALRLRRS S
Sbjct: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
PA+W CF PGLCVKS VVPPNYSEGTLPYSYNLC+AHTG EFNFLKCS L S +D++
Sbjct: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDIL 778
Query: 781 CSVSPGALIPPHGGEDLTSH 800
C S GAL P +LTSH
Sbjct: 779 CGDSSGALFPLCNSSELTSH 798
>gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precursor
[Homo sapiens]
Length = 811
Score = 1050 bits (2714), Expect = 0.0
Identities = 537/791 (67%), Positives = 619/791 (78%), Gaps = 1/791 (0%)
Query: 15 QVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
QVL P LL LF L IRYSIPEELAK SVVGNLAKDLGLSV D+ ARKLRVSAEK +
Sbjct: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
Query: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
F+V+ ESGDLLV +RIDREQIC ++ C L + V ENPLNIF++ V+++D+ND+ P F
Sbjct: 75 FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
Query: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
+ +I+L+I ES GT LDPA D D+ NS++ Y +N N YF L + DG KYPEL
Sbjct: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
Query: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
L+ LDREE H L+LTA+DGGDPP+S T I I V D NDNPPVFS+D YR++L E+
Sbjct: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
Query: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
+PPG VLQVTATD+DEG+NAEI Y F + + KH F+L+EKTG I DFE
Sbjct: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
Query: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
YT+ +EAKD G L+ C + +EILD+ND +PE+I+TS+S + E+SPPG V+AL KTRD
Sbjct: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
Query: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
D G NGEV C + + F + SSS NYYKLVTDGALDRE+ PEYN+TI ATD GKPPLSS
Sbjct: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
Query: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
S +TL+++D+NDNAPVF QTSY+VHVAENNPPGASIAQ+SASDPDLG +G +SYSIVAS
Sbjct: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
Query: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
DL+P + SYVSVSAQSGVVFAQRAFDHEQLRAF LTLQARD GSP LSANVSLRVLVGD
Sbjct: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
Query: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
NDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FAD+LQE+LPD
Sbjct: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
Query: 675 LSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCVK 734
LSDR SDPQA+LQFYLVVALALISVLF LAVILAI+LRLR S WDCF PGL K
Sbjct: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
Query: 735 SGPVVPPNYSEGTLPYSYNLCIAHTGTK-EFNFLKCSVPLHSNEDMVCSVSPGALIPPHG 793
GP V PNYSEGTLPYSYNLC+A K EFNFL + L +D+VC + HG
Sbjct: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQNTNHG 794
Query: 794 GEDLTSHPETL 804
+ +T+
Sbjct: 795 AAGVPFASDTI 805
>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
[Homo sapiens]
Length = 810
Score = 1038 bits (2683), Expect = 0.0
Identities = 541/768 (70%), Positives = 613/768 (79%), Gaps = 3/768 (0%)
Query: 15 QVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
QVLFP LL LF +S+ IRY+IPEELA GS VG LAKDLGLSV ++ RKLRVSAE +
Sbjct: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
Query: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
F+V ESGDLLV RIDRE+IC + C L+ E V ENP+N+FHV+VVI+D+ND+AP+F
Sbjct: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
Query: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
K I LEI ESA G + SLD A D D+ NS+K Y IN N YFSL + + DG KYP L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
Query: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
LEK LDRE Q SH LILTA+DGGDPP S T HI I V D NDN PVFS++ YR+SL EN
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
Query: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
+P G+ VL+V ATDQDEG+NAEI Y F ++ ST +F+L+ TG I N + DFE+ R
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSR 310
Query: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
Y + VEAKDGG + C V IEI+DENDN+PE+ S S+QI E+S G V+AL K RD
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Query: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
D G NG V C + ++PFK+ S+S NYYKLV GAL+REQT +YNVTI+ATD+GKP LSS
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
Query: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
SITL+++DINDNAPVF Q SYVVHV+ENNPPGASIAQVSASDPDLG NG +SYSI+AS
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
Query: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
DLEP + SYVSVS QSGVVFAQRAFDHEQLRAF LTLQARD GSP LSANVSLRVLVGD
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
Query: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
NDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FAD+LQE+LPD
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
Query: 675 LSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCVK 734
LSDRP SDPQ ELQFYLVVALALISVLFLLAVILAIALRLRRS S T CF GLC K
Sbjct: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
Query: 735 SGPVVPPNYSEGTLPYSYNLCIA-HTGTKEFNFLKCSVPLHSNEDMVC 781
SGP VPPN+SEGTLPYSYNLCIA H+ EFN L + + +D++C
Sbjct: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLC 778
>gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precursor
[Homo sapiens]
Length = 814
Score = 983 bits (2541), Expect = 0.0
Identities = 506/782 (64%), Positives = 596/782 (76%), Gaps = 1/782 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG S R AG R++LF LL L LSEPIRY+IPEEL +GS+VGNLAKDLG V D
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ R LRV AEK F+V E+G+LLV +RIDRE+IC ++ C L+ E V E PLN FHV
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
V+I+D+ND+ P F + LEI E A G +L+ A DPD+ +NS++ Y ++ +P+FSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
+ + N DG +YPEL L+ LDREEQ H L+LTA+DGG+P RS T I + V D NDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
VF++D YR++++ENLP GS VL+V A D DEG+NAEI Y F + + + +F LD KTG
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
+ DFE+ + YT+ VEAKDGG + CKV I+I DENDN+PEI + S S I E++
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
G VAL KT DLD G NGE+ C ++ + PFKI + N Y+LVTDGALDREQ PEYNV
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
TI ATD+G PPLSSS++ITL++ D+NDN PVF Q SY VHVAENNPPGASIA V ASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
LG NG +SY IVASDLEP +SSYVSVSA+SGVVFAQRAFDHEQLRAF LTLQARD GSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
TLSANVSLRVLV DRNDNAP VLYPALGP+GSA FDMVPRSAEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
HL+FAD+LQEI PDLSDRP SDPQAELQF+LVVALALISVLFLLAVILAI+LRLR S
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIA-HTGTKEFNFLKCSVPLHSNEDM 779
PAT F PG+C K+ P V P YSE TLPYSYN C A H+ EF FL + +D+
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 780 VC 781
+C
Sbjct: 781 LC 782
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 926 bits (2394), Expect = 0.0
Identities = 499/929 (53%), Positives = 637/929 (68%), Gaps = 6/929 (0%)
Query: 7 QRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKL 66
QR QVL LL + + IRYSIPEEL KGS VGN+ KDLGL +++ +
Sbjct: 5 QRHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGV 64
Query: 67 R-VSAEKLH-FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIE 124
R VS ++ FS++ +G L+ RIDRE++C + RC + +VE+ LN++ V V I
Sbjct: 65 RIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIV 124
Query: 125 DVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRV 184
D+ND+ P+F K+E+ ++I E+A+ +R L DPD+ +NS++ +K++ N +FS+ V+
Sbjct: 125 DINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQS 184
Query: 185 NSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSR 244
+ G KYPEL LE LDRE + + L+LTA+DGGDP RS+ A I ++V D NDN P+F++
Sbjct: 185 EAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQ 244
Query: 245 DEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNN 304
YR+S+ ENLP G+PVL VTATDQDEGV+ E+ Y F + +F L+ TG I +
Sbjct: 245 PVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTS 304
Query: 305 QSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGM 364
+ D+ED Y + VEA+DG GL + KV+I ILD NDN PE+++TS S I E++PPG
Sbjct: 305 ANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGT 364
Query: 365 VVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVA 424
V+ALF+ D D G NG V C+I +PF++ S NYY+LVT+ ALDRE+ YN+T+ A
Sbjct: 365 VIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTA 424
Query: 425 TDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLN 484
TD+G PPLS+ I+L VAD NDN P F +SY V+V ENNP GASI V+A DPD+ N
Sbjct: 425 TDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQN 484
Query: 485 GHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSA 544
+SYS+ L+ +SSYVS+++ +G+++A R+FD+EQLR L + A D G P LS+
Sbjct: 485 AQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSS 544
Query: 545 NVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWL 604
NVSL + V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWL
Sbjct: 545 NVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWL 604
Query: 605 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF 664
SY +L+ASEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL +
Sbjct: 605 SYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAV 664
Query: 665 ADNLQEILPDL-SDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPAT 723
AD + +IL DL S P ++L YLVVA+A +S +FL VI+ +ALRL+R
Sbjct: 665 ADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRL 724
Query: 724 WDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMVCSV 783
GL G +Y+ ++ T + L P ++ + ++
Sbjct: 725 LQASGGGLASMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYA-DTLINQE 783
Query: 784 SPGALIPPHGGEDL--TSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 841
S P +DL T QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 784 SYEKSEPLLITQDLLETKGEPRQLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 843
Query: 842 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 901
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 844 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 903
Query: 902 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 904 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 925 bits (2390), Expect = 0.0
Identities = 493/924 (53%), Positives = 632/924 (68%), Gaps = 14/924 (1%)
Query: 16 VLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRV--SAEKL 73
VL +LL + T IRYS+PEEL KGS VG++++DLGL +++ R +R+
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 HFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQF 133
F+++ SG L+ RIDRE++C +C+L L+ ++E+ + I+ V V + D+ND+AP F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 DKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPE 193
+ E+ ++I E+A+ R L A DPDI NS++ Y+++ N +FSL+V+ +DG KYPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 LSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSE 253
L L++ LDREE+ +H L+LTA DGGDP R+ TA I + V D NDN P F++ EYR S+ E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 NLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVE 313
NL G+ +L V ATD DEGVNAE+ Y FR +F LD +G I D E+
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 314 RYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRD 373
Y MEV+A D G S + KV+I +LD NDN+PE+++TSL+ + ENSP G ++AL D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373
Query: 374 LDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLS 433
D NG+V C I+ ++PFK+ S NYY LVTD LDREQ P YN+T+ ATDRG PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433
Query: 434 SSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVA 493
+ I+L VAD NDN PVF Q SY ++ ENNP G S+ V+A DPD N I+YS+
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493
Query: 494 SDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVG 553
+ ++ ++SSYVS+++ +GV++A +FD+EQ R + + ARD+G P LS+NVSL + V
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553
Query: 554 DRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 613
D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILP 673
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD++ ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673
Query: 674 DLS--DRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGL 731
DL + P S+ ++L YLVVA+A +S +FL VIL +ALRLRR GL
Sbjct: 674 DLGSLESPANSE-TSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQASGGGL 732
Query: 732 --CVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMVCSVSPGALI 789
S V YS+ + + T +++ + + P + DM+ S
Sbjct: 733 TGAPASHFVGVDGVQAFLQTYSHEVSLT-TDSRKSHLI---FPQPNYADMLVSQESFEKS 788
Query: 790 PP---HGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML 846
P G + L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML
Sbjct: 789 EPLLLSGDSVFSKDSHGLIEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML 848
Query: 847 QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA 906
QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA
Sbjct: 849 QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA 908
Query: 907 GKRDGKAPAGGNGNKKKSGKKEKK 930
GKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 909 GKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 924 bits (2387), Expect = 0.0
Identities = 501/937 (53%), Positives = 635/937 (67%), Gaps = 15/937 (1%)
Query: 6 AQRRRAGPRQVLFPLLLPLFYPTL----SEPIRYSIPEELAKGSVVGNLAKDLGLSVLDV 61
A R + G R L LLL +F TL + IRYS+PEE KGS VGN++KDLGL ++
Sbjct: 2 ANRLQRGDRSRLL-LLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
Query: 62 SARKLR-VSAEKLH-FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHV 119
+ R +R VS K F+V+ SG L+ RIDRE++C+ C L +E +VE+ L I+ V
Sbjct: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
Query: 120 IVVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFS 179
V I D+ND+AP F + E+ +++ E A G R +L A DPD+ +NS++ Y+++ N YFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
Query: 180 LMVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNP 239
L +R +DG K PEL LE LDRE++ +H L+LTALDGGDP R I + V D ND+
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
Query: 240 PVFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTG 299
P+F++ YR+S+ EN+ G+ VL V ATD DEG+N E+ Y FR+ +F LD +TG
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
Query: 300 MIKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILEN 359
++ S DFE Y ME++ +DGGGL T ++I ++D NDN+PEI ITS + ILEN
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
Query: 360 SPPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYN 419
SPPG V+AL +D D G NG+V C I +PFK+ + NYYKL+T LDRE YN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
Query: 420 VTIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDP 479
+T+ ATD+G PPLS+ + L VAD NDN PVF +SY ++ ENNP GASI V+A DP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
Query: 480 DLGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGS 539
D N ++YS+ ++ + +SSYVS+++ +GV++A ++FD+EQ R L + ARD G
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
Query: 540 PTLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSG 599
P LS+NVSL + V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
Query: 600 HNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATAT 659
NAWLSY +L+ASEPGLF++G TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT T
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
Query: 660 LHLVFADNLQEILPDLSDRPVLSDPQ-AELQFYLVVALALISVLFLLAVILAIALRLRRS 718
L + AD++ E+L DL L++ + ++L YLVVA+A +S +FL+ VI+ +ALRL R
Sbjct: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720
Query: 719 LSPATWDCFHPGLC-VKSGPVVPPNYSEGTL-PYSYNLCIAHTGTKE---FNFLKCSVPL 773
GL + + V + + L YS+ + + K F L
Sbjct: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780
Query: 774 HSNEDMVCSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDT 833
S E C S LI L T QAPPNTDWRFSQAQRPGTSGSQNGDDT
Sbjct: 781 ISQES--CEKSEPLLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDT 838
Query: 834 GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV 893
GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV
Sbjct: 839 GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV 898
Query: 894 YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 899 YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 917 bits (2370), Expect = 0.0
Identities = 493/931 (52%), Positives = 633/931 (67%), Gaps = 32/931 (3%)
Query: 20 LLLP-LFYPTLSEP----IRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
LLLP + TL EP IRYS+PEEL KGS VGN+AKDLGL +++ R +R+ +
Sbjct: 13 LLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGRT 72
Query: 75 --FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQ 132
F+++ SG L+ RIDRE++C + C + +VEN + I+ V V I D+ND+ P+
Sbjct: 73 QLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPR 132
Query: 133 FDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYP 192
F +E+ +++ E+A+AGTRL L A D D+ +NS++ Y+++SN +FSL V +DG KYP
Sbjct: 133 FRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYP 192
Query: 193 ELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLS 252
EL LE+ LDRE++ H L+LTALDGGDP S T HI ++V D NDN P+F+ EY +S+
Sbjct: 193 ELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVP 252
Query: 253 ENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDV 312
EN+P G+ +L +TATD DEG+N ++ Y FR+ + F LD G I QS D+E+
Sbjct: 253 ENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEES 312
Query: 313 ERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTR 372
Y MEV A+DGG L KV++ + D NDN+PE+I+TSL+ I E+ PG V+ALF
Sbjct: 313 RFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVH 372
Query: 373 DLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPL 432
D D G NGE+ C+I ++PFK+ S +NYY L+T LDRE+T +YN+T+ D G PPL
Sbjct: 373 DGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPL 432
Query: 433 SSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIV 492
S+ I L VAD+NDN P F Q SY V ENNP G SI V+A DPD G N ++YS+
Sbjct: 433 STESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLA 492
Query: 493 ASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLV 552
+ +SSYVS+++ +GV++A R+FD+EQLR L + A D G+P LS+NVSL + V
Sbjct: 493 EDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFV 552
Query: 553 GDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQAS 612
D+NDN P +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +L+AS
Sbjct: 553 LDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 612
Query: 613 EPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEIL 672
EPGLF++GL TGEVRTARAL DRDA +Q L+VAV D GQPPLSAT T+ + AD + +IL
Sbjct: 613 EPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDIL 672
Query: 673 PDLSDRPVLSDPQ-AELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGL 731
DL DP+ +L YLVVA+A +S +FL VI+ + LRLRR +H
Sbjct: 673 ADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRR---------WHKSR 723
Query: 732 CVKSG----PVVPPNYSEG-----TLPYSYNLCIAHTGTKEFNFLKCSVPLHSN---EDM 779
+++ VP ++ G +Y+ ++ T + L P +++ +
Sbjct: 724 LLQAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLLSEE 783
Query: 780 VCSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 839
C S L+ + + E QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
Sbjct: 784 SCEKSEPLLM---SDKVDANKEERRVQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 840
Query: 840 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 899
QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN
Sbjct: 841 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 900
Query: 900 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 909 bits (2350), Expect = 0.0
Identities = 491/930 (52%), Positives = 631/930 (67%), Gaps = 28/930 (3%)
Query: 17 LFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH-- 74
L +LL + + I YS+ EE KGS VG++AKDLGL +++ R +R+ +
Sbjct: 15 LLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQL 74
Query: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
F+++ SG L+ RIDRE+IC + RC + ++E+ +N++ + V I D+ND+ P+F
Sbjct: 75 FALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRFL 134
Query: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
+EI+++I E+ + G R L A DPD+ NS++ Y+++ N +FSL V+ D KYPEL
Sbjct: 135 TEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPEL 194
Query: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
LE++LDREE+R H L+LTA DGGDPPRS+TAHI+++V D ND+ PVFS +Y++++ EN
Sbjct: 195 VLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPEN 254
Query: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
+P G+ +L V A D DEGVN E+ Y FR MF L+ TG I + D+E+
Sbjct: 255 VPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETAF 314
Query: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
Y MEV+A+DG G T+ KV+I +LD NDN+PE+ +TSLS I E++P G V+ALF +D
Sbjct: 315 YEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDR 374
Query: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
D G NGEV C I ++PFK+ S +NYY+LVT LDRE YN+T+ ATD G PPLS
Sbjct: 375 DSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSR 434
Query: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
I + VAD NDN P F +SY V++AENNP GASI V+A D D N I+YS+
Sbjct: 435 ETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAED 494
Query: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
++ VSSYVS+++ +GV++A ++FD+EQLR L + A D G P LS+N+SL + V D
Sbjct: 495 TIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLD 554
Query: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
+NDN P +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +L+ASEP
Sbjct: 555 QNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASEP 614
Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
GLF++GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD++ E+L D
Sbjct: 615 GLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLAD 674
Query: 675 LSDRPVLSDP-QAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLC- 732
L P +L YLVVA+A +S +FL V++ +ALRLRR GL
Sbjct: 675 LGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGGLAN 734
Query: 733 VKSGPVVPPNYSEGTL-PYSYNLCIAHTGTKEF------NFLKCSVPLHS---NEDMVCS 782
V + V + + L YS+ + + K N++ + S N+ ++ S
Sbjct: 735 VPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLISQESCEKNDSLLTS 794
Query: 783 VSPGALIPPHGGEDLTSHPETLTS--QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 840
V D E L S QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
Sbjct: 795 V------------DFQECKENLPSIQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 842
Query: 841 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 900
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
Sbjct: 843 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 902
Query: 901 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 903 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 905 bits (2338), Expect = 0.0
Identities = 486/929 (52%), Positives = 623/929 (67%), Gaps = 12/929 (1%)
Query: 10 RAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVS 69
R G L LL T S IRYS+ EEL KGS VGN+A DLGL +++ R +R+
Sbjct: 8 RNGRGLALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIV 67
Query: 70 AEKLH--FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVN 127
+ FS++ +SG L+ RIDRE++C + C +++ +VE+ L IF V + I+D+N
Sbjct: 68 SRGRTQLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDIN 127
Query: 128 DHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSD 187
D+AP F +E+ ++I E GTR + A DPD+ INS+++YK++ N YFSL V S+
Sbjct: 128 DNAPNFPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSE 187
Query: 188 GGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEY 247
G KYPEL LE+ LDRE++ H L+L A DGGDP S HI++ V D NDNPP+F++ EY
Sbjct: 188 GAKYPELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEY 247
Query: 248 RISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSF 307
R+S+ EN+P G+ +L V ATD DEG NA+++Y +F L+ +G + +S
Sbjct: 248 RVSVWENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSL 307
Query: 308 DFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVA 367
D+ED Y +++EA+DG GL ++ K+++ +LD NDN+PEI ITSL+ + E G +A
Sbjct: 308 DYEDAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIA 367
Query: 368 LFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDR 427
L D D G NG+V + ++PFK+ S + YY+LVT +LDREQ EYN+++ A+D
Sbjct: 368 LIDVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDG 427
Query: 428 GKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHI 487
G PPLS+ ITL+V DINDN P F SY ++ ENNP GASI V+A DPD N I
Sbjct: 428 GSPPLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARI 487
Query: 488 SYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVS 547
+Y++ L+ +SS+VS+++ +GV++A R+FD+EQ R L + A D G+P LS+NVS
Sbjct: 488 TYALTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVS 547
Query: 548 LRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYH 607
L + V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY
Sbjct: 548 LNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYR 607
Query: 608 VLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADN 667
+L+ASEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD
Sbjct: 608 LLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADR 667
Query: 668 LQEILPDL-SDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDC 726
+ +IL DL S P ++L YLVVA+A +S +FL VI+ +ALRLRR
Sbjct: 668 IPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQA 727
Query: 727 FHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSN---EDMVCSV 783
GL G +Y+ ++ T + L P +++ C
Sbjct: 728 SGGGLASTPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEK 787
Query: 784 SPGALIPPHGGEDL--TSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 841
S LI +DL L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 788 SEPLLIT----QDLLEMKGDSNLLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 843
Query: 842 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 901
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 844 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 903
Query: 902 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 904 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 904 bits (2336), Expect = 0.0
Identities = 488/939 (51%), Positives = 627/939 (66%), Gaps = 19/939 (2%)
Query: 6 AQRRRAGPRQ-----VLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
AQR R+ + VL L + + + I YSIPEEL KGS VGN++KDLGL+ +
Sbjct: 3 AQRNRSKESKDCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRE 62
Query: 61 VSARKLRVSAEKLH--FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFH 118
++ R +R+ + FS++ SG L+ RIDRE++C + RC + +VE+ + +F
Sbjct: 63 LAERGVRIVSRGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFG 122
Query: 119 VIVVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYF 178
+ + + D+ND+AP+F + + ++I E+ +AG R L A DPD+ +NS++ Y+++ N +F
Sbjct: 123 IEIEVTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHF 182
Query: 179 SLMVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDN 238
SL V+ ++G KYPEL LE LDREE+ H L+LTA DGGDP RS T + ++V D NDN
Sbjct: 183 SLRVQSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDN 242
Query: 239 PPVFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKT 298
PVF+ EYR+S+ ENLP G+ +L VTATD+DEG N E+ Y FR + F L++ T
Sbjct: 243 APVFTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYT 302
Query: 299 GMIKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILE 358
G IK +++ D+E+ Y +E++A+DGG KV+I + D NDNSPE+ ITSL + E
Sbjct: 303 GEIKISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTE 362
Query: 359 NSPPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEY 418
+SP G VVAL DLD NG+V C+I +PFK+ S ++YY+LV ALDREQ Y
Sbjct: 363 DSPLGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSY 422
Query: 419 NVTIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASD 478
N+T+ ATD G PPLS+ L VADINDN P F Q SY ++ ENN GASI V+A D
Sbjct: 423 NITVTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALD 482
Query: 479 PDLGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHG 538
PD N I YS+ ++ + +SSY+S+++ +GV++A R+FD+EQ + + A D G
Sbjct: 483 PDSKENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSG 542
Query: 539 SPTLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADS 598
P LS+NVSL + V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DS
Sbjct: 543 DPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDS 602
Query: 599 GHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATA 658
G NAWLSY +L+ASEPGLF++G TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT
Sbjct: 603 GQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATV 662
Query: 659 TLHLVFADNLQEILPDLS--DRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLR 716
TL + AD++ ++L DL + P S+ ++L YLVVA+A +S +FL VI+ +A RLR
Sbjct: 663 TLTVAVADSIPQVLADLGSFESPANSE-TSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLR 721
Query: 717 RSLSPATWDCFHPGLCVKSGP--VVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLH 774
R GL SG V YS+ + + K P
Sbjct: 722 RWHKSRLLQASGGGLTGVSGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF----PQP 777
Query: 775 SNEDMVCSVSPGALIPPHGGEDLTSHP---ETLTSQAPPNTDWRFSQAQRPGTSGSQNGD 831
+ D + S P D + P L QAPPNTDWRFSQAQRPGTSGSQNGD
Sbjct: 778 NYADTLISQESCEKNDPLSLLDDSKFPIEDTPLVPQAPPNTDWRFSQAQRPGTSGSQNGD 837
Query: 832 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ 891
DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ
Sbjct: 838 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ 897
Query: 892 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 898 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 936
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 903 bits (2333), Expect = 0.0
Identities = 483/928 (52%), Positives = 617/928 (66%), Gaps = 19/928 (2%)
Query: 14 RQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKL 73
R +L L L L + I YS+PEE KGS VGN+AKDLGL +++ +R+ +
Sbjct: 12 RLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGR 71
Query: 74 H--FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAP 131
F+++ SG L+ RIDRE++C + C + +VE+ + +F V V I D+ND+ P
Sbjct: 72 MPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTP 131
Query: 132 QFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKY 191
QF +E+ ++ E + GTR+SL D D+ +NS++ Y+++SNP+FSL V+ +DG ++
Sbjct: 132 QFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQH 191
Query: 192 PELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISL 251
PE+ L+ LDREE+ H LILTA DGG+P RS T I I V D NDNPP F++ +Y I++
Sbjct: 192 PEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINV 251
Query: 252 SENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFED 311
EN+P G+ +L V ATD DEG N E+ Y F + +F LD TG I N + DFE+
Sbjct: 252 PENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEE 311
Query: 312 VERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKT 371
+ Y+MEV+A+DG GL + KV+I++LD NDN+PE+ ITS++ + EN PPG ++AL
Sbjct: 312 YKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISV 371
Query: 372 RDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPP 431
D D G NG C I ++PFK+ +NYY+LVT+ LDRE YN+TI A D+G P
Sbjct: 372 HDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPA 431
Query: 432 LSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSI 491
LS+ I+L V DINDN+PVF Q SY ++ ENNP GASI V A D D N I+YS+
Sbjct: 432 LSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSL 491
Query: 492 VASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVL 551
+ ++ +S+Y+S+++ +GV++A R+FD+EQ R L + ARD G P LS+NVSL +
Sbjct: 492 IEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLF 551
Query: 552 VGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQA 611
+ D+NDNAP +LYPAL DGS ++ P SAEPGYLVTKVVAVD DSG NAWLSY +L+A
Sbjct: 552 LLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKA 611
Query: 612 SEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEI 671
SEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + +I
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDI 671
Query: 672 LPDL-SDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPG 730
L DL S P ++L YLVVA A +S +FL VI+ +A RLRR G
Sbjct: 672 LADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGG 731
Query: 731 LCVKSGP--VVPPNYSEGTLPYSYNLCIAHTGTKEF------NFLKCSVPLHSNEDMVCS 782
L G V YS+ + + K N+ + S E
Sbjct: 732 LASMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKGFL 791
Query: 783 VSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 842
+P +L L E + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD
Sbjct: 792 SAPQSL--------LEDKKEPFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 843
Query: 843 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 902
TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL
Sbjct: 844 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 903
Query: 903 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
TNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 904 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 903 bits (2333), Expect = 0.0
Identities = 483/926 (52%), Positives = 622/926 (67%), Gaps = 18/926 (1%)
Query: 16 VLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH- 74
VL LL + + IRYS+ EE+ +GS VGN+AKDLGL L ++ + +R+ +
Sbjct: 14 VLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRGRSQ 73
Query: 75 -FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQF 133
F+++ SG L+ NRIDRE++C + C L ++E+ L I+ V V I D+ND+AP+F
Sbjct: 74 LFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNAPRF 133
Query: 134 DKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPE 193
+E+ L+I E+ + G R+ L A D D+ N+++ Y +N N +FSL VR +DG KYPE
Sbjct: 134 GVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNKYPE 193
Query: 194 LSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSE 253
L LE+ LDREE+ H L+L A DGGDP S T+ I + V D NDN PVF++ EYRIS+ E
Sbjct: 194 LVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISIPE 253
Query: 254 NLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVE 313
N G+ +L VTATD DEG A++ Y+ + T +F L +G + + D+ED
Sbjct: 254 NTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLDYEDAT 313
Query: 314 RYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRD 373
+ +++EA+DG GL T+ KVI+ +LD NDN+PE +TS + + E+S PG ++ LF D
Sbjct: 314 FHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHD 373
Query: 374 LDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLS 433
D G N C++ D+PFK+ S +NYY+LVT ALDREQ YN+T+ A D G P LS
Sbjct: 374 RDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSLS 433
Query: 434 SSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVA 493
+ I L VADINDNAP F +TSY ++ ENNP GAS+ V+A DPD N H++YS
Sbjct: 434 TDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYSFAE 493
Query: 494 SDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVG 553
++ +SSY+S+++ +GV++A R+FD+EQLR + + ARD G+P LS+NVSL + V
Sbjct: 494 DTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVL 553
Query: 554 DRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 613
D+NDNAP +LYPA DGS ++ PRSAEPGYLVTKVVAVD DSG NAWLSYH+L+ASE
Sbjct: 554 DQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILP 673
PGLFS+GL TGEVRTARAL DRDA +Q L+VA++D GQPPLSAT TL + AD + +IL
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDILA 673
Query: 674 DL-SDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLC 732
DL S P ++L YLVVA+A +S +FL VI+ +A RLRR L
Sbjct: 674 DLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGSLT 733
Query: 733 -VKSGPVVPPNYSEGTL-PYSYNLCIAHTGTKEF------NFLKCSVPLHSNEDMVCSVS 784
++S V + L YS+ + + K N+ + S E +
Sbjct: 734 GMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKDFLSA 793
Query: 785 PGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 844
P +L+ ET + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE
Sbjct: 794 PQSLLE-------EEREETFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 846
Query: 845 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 904
MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN
Sbjct: 847 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 906
Query: 905 AAGKRDGKAPAGGNGNKKKSGKKEKK 930
AAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 907 AAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 902 bits (2330), Expect = 0.0
Identities = 476/929 (51%), Positives = 625/929 (67%), Gaps = 20/929 (2%)
Query: 14 RQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKL 73
R VL LL + + + IRYS+PEE KG +VGN++KDL L +++ R++R+ +
Sbjct: 12 RLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGR 71
Query: 74 H--FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAP 131
FS++ SG L+ RIDRE++C + RC + + +VE+ + ++ + + + D+ND AP
Sbjct: 72 TQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAP 131
Query: 132 QFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKY 191
+F + + ++I E A G R L A DPD+ +NS++ Y+++ N +FSL V+ +G
Sbjct: 132 KFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAIN 191
Query: 192 PELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISL 251
PEL LE+ LDREE +H L+LTA DGG+P RS+T I ++V DTNDN PVF++ YR+ +
Sbjct: 192 PELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKV 251
Query: 252 SENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFED 311
EN+PPG+ +L TA+D DEG+N ++ Y F + +F L+E TG I +S D+E+
Sbjct: 252 LENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEE 311
Query: 312 VERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKT 371
Y ME++A+DGGGL KV+I + D NDN PE+ ITSL + E++P G V+ LF
Sbjct: 312 CSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNA 371
Query: 372 RDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPP 431
D D G NG+V C+I+ ++ F + +S +YY+L+T LDRE+ EYN+T+ ATDRG PP
Sbjct: 372 HDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPP 431
Query: 432 LSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSI 491
LS+ ITL V DINDN P F Q SY V++ ENN G SI V A DPD N + YS+
Sbjct: 432 LSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSL 491
Query: 492 VASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVL 551
++ +S+YVS+++ +GV++A +FD+EQ R + + A D GSP LS+NVSLR+
Sbjct: 492 AEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLF 551
Query: 552 VGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQA 611
V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY + +A
Sbjct: 552 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKA 611
Query: 612 SEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEI 671
SEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD++ +I
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDI 671
Query: 672 LPDLSDRPVLSDPQA-ELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPG 730
L DL + +D +A +L YLVVA+A++S +FL VI +ALRLR W H
Sbjct: 672 LADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRH------WHSSHLL 725
Query: 731 LCVKSGPV-VPPNYSEG-----TLPYSYNLCIAHTGTKEFNFLKCSVPLHSN---EDMVC 781
G VP ++ G +Y+ + T + L P +++ C
Sbjct: 726 RATSDGLAGVPTSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLIFPQPNYADTLISQQSC 785
Query: 782 SVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 841
+ + + P L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 786 EKNEPLCVSVDSKFPIEDTP--LVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 843
Query: 842 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 901
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 844 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 903
Query: 902 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 904 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 900 bits (2326), Expect = 0.0
Identities = 481/925 (52%), Positives = 622/925 (67%), Gaps = 25/925 (2%)
Query: 20 LLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH--FSV 77
LLL + +E I YS+ EE +GSVVGN+AKDLGL+ +++ R +R+ + F++
Sbjct: 18 LLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFAL 77
Query: 78 DAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFDKKE 137
+ SG L+ RIDRE++C C LE ++E+ + I V V I DVND+ P F ++
Sbjct: 78 NPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQ 137
Query: 138 IHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPELSLE 197
+++ E+ + G R L A DPD+ +NS++ Y++NSN YFSL V+ +DG KYPEL LE
Sbjct: 138 REIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLE 197
Query: 198 KLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSENLPP 257
+ LDREE+ H L+LTA DGGDP RS TA I I + DTNDN PVF++ EY +S+ EN+P
Sbjct: 198 RALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPV 257
Query: 258 GSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVERYTM 317
G+ +L V ATD DEG N ++ Y FR +F L+ +G I D+ED Y +
Sbjct: 258 GTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDI 317
Query: 318 EVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDLDFG 377
+VEA DG GL + KV++ +LDENDN+PE+ +TSL+ + E+S PG V+ALF D D G
Sbjct: 318 DVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSG 377
Query: 378 GNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSSSRS 437
GNG V C+I ++PF + + NYY+L+T LDRE+ EYN+T+ ATD+G PPLS+
Sbjct: 378 GNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETH 437
Query: 438 ITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVASDLE 497
I+L V DINDN P F SY ++ ENNP GASI ++A DPD G N I+YS+ +
Sbjct: 438 ISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQ 497
Query: 498 PLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGDRND 557
+SSYVS+++ +G+++A +FD+EQ R L + A D G P LS+NVSL + V D+ND
Sbjct: 498 GAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQND 557
Query: 558 NAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLF 617
N P +LYP DGS ++ PRSA+ GYLVTKVVAVD DSG NAWLSY +L++SEPGLF
Sbjct: 558 NVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLF 617
Query: 618 SLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPDLSD 677
++GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT TL + AD++ ++L DL
Sbjct: 618 AVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGS 677
Query: 678 RPVLSDP-QAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWD---CFHPGLCV 733
+DP + L YLVVA+A +S +FL V + +AL+LRR W H
Sbjct: 678 LKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRR------WHKSRLLHAEGSR 731
Query: 734 KSGPVVPPNYSEG-----TLPYSYNLCIAHTGTKEFNFLKCSVPLHSN---EDMVCSVSP 785
+G VP ++ G +Y+ ++ T + L S P +++ C S
Sbjct: 732 LAG--VPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSE 789
Query: 786 GALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM 845
LI + L + + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM
Sbjct: 790 PLLITQ---DLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM 846
Query: 846 LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA 905
LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA
Sbjct: 847 LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA 906
Query: 906 AGKRDGKAPAGGNGNKKKSGKKEKK 930
AGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 907 AGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 885 bits (2288), Expect = 0.0
Identities = 474/907 (52%), Positives = 615/907 (67%), Gaps = 14/907 (1%)
Query: 33 IRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH--FSVDAESGDLLVKNRI 90
IRYS+PEE KGS VGN++KDLGL ++ +R+ + F+++ SG L+ RI
Sbjct: 31 IRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRGRTQLFALNPRSGSLITAGRI 90
Query: 91 DREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFDKKEIHLEIFESASAGT 150
DRE++C + RC + + +VE+ +F V + I D+ND+ P+F +++ ++I E A G
Sbjct: 91 DREELCAQSPRCLININTLVEDKGKLFGVEIEIIDINDNNPKFQVEDLEVKINEIAVPGA 150
Query: 151 RLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPELSLEKLLDREEQRSHSL 210
R L A DPD+ +NS++ Y+++ N +FSL V+ +G PEL LE+ LDREE+ +H L
Sbjct: 151 RYPLPEAVDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPELVLERALDREEEAAHHL 210
Query: 211 ILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSENLPPGSPVLQVTATDQD 270
+LTA DGG PPRS+T I ++V DTNDN PVF YR+ + EN+PPG+ +L VTA+D D
Sbjct: 211 VLTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLENMPPGTRLLTVTASDPD 270
Query: 271 EGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVERYTMEVEAKDGGGLSTQ 330
EG+N ++ Y FR + +F L+E TG I +S D+E+ Y ME++A+D G L +
Sbjct: 271 EGINGKVAYKFRKINEKQTPLFQLNENTGEISIAKSLDYEECSFYEMEIQAEDVGALLGR 330
Query: 331 CKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDLDFGGNGEVRCNIETDI 390
K++I + D NDN PE+IITSL +LENS PG V+A D D G NG+V C ++
Sbjct: 331 TKLLISVEDVNDNRPEVIITSLFSPVLENSLPGTVIAFLSVHDQDSGKNGQVVCYTRDNL 390
Query: 391 PFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSSSRSITLYVADINDNAP 450
PFK+ S NYY+LVT LDRE YN+T++A+D G PPLS+ I L+VADINDN P
Sbjct: 391 PFKLEKSIGNYYRLVTRKYLDRENVSIYNITVMASDLGTPPLSTETQIALHVADINDNPP 450
Query: 451 VFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVASDLEPLAVSSYVSVSAQ 510
F SY ++ ENN GASI ++A DPD N ++YS+ L+ +SSY+S+++
Sbjct: 451 TFPHASYSAYILENNLRGASIFSLTAHDPDSQENAQVTYSVTEDTLQGAPLSSYISINSD 510
Query: 511 SGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGDRNDNAPRVLYPALGPD 570
+GV++A ++FD+EQ+R L + A D G P LS+N+SL + V D+NDNAP +LYPAL D
Sbjct: 511 TGVLYALQSFDYEQIRDLQLLVTASDSGDPPLSSNMSLSLFVLDQNDNAPEILYPALPTD 570
Query: 571 GSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTAR 630
GS ++ PRSAE GYLVTKVVAVD DSG NAWLSY +L+ASEPGLFS+GL TGEVRTAR
Sbjct: 571 GSTGVELAPRSAERGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTAR 630
Query: 631 ALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPDL-SDRPVLSDPQAELQ 689
AL DRDA +Q L+VAV+D GQPPLSAT TL + AD++ E+L +L S +P + + L
Sbjct: 631 ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLTELGSLKPSVDPNDSSLT 690
Query: 690 FYLVVALALISVLFLLAVILAIALRLRR-SLSPATWDCFHPGLCVKSGPVVPPNYSEGTL 748
YLVVA+A IS +FL V + + LRLRR S D + V + V + L
Sbjct: 691 LYLVVAVAAISCVFLAFVAVLLGLRLRRWHKSRLLQDSGGRLVGVPASHFVGVEEVQAFL 750
Query: 749 PYSYNLCIAHTGTKEFNFLKCSVP-----LHSNEDMVCSVSPGALIPPHGGEDLTSHPET 803
+Y+ ++ T + L P L S E + S + H ++ H +
Sbjct: 751 -QTYSQEVSLTADSRKSHLIFPQPNYADMLISQEGCEKNDSLLTSVDFHEYKNEADHGQ- 808
Query: 804 LTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST 863
QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST
Sbjct: 809 ---QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST 865
Query: 864 LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK 923
LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK
Sbjct: 866 LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK 925
Query: 924 SGKKEKK 930
SGKKEKK
Sbjct: 926 SGKKEKK 932
>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
[Homo sapiens]
Length = 944
Score = 815 bits (2105), Expect = 0.0
Identities = 460/952 (48%), Positives = 603/952 (63%), Gaps = 49/952 (5%)
Query: 11 AGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSA 70
AG QVL L L + +S +RYS+ EE G++VGN+A+DLGL + D+ +R+L++ +
Sbjct: 10 AGKWQVLCMLSL-CCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGS 68
Query: 71 EK--LHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVND 128
E+ +FS+ SG L V +IDRE +C C L ++ V E+PL + V V I D+ND
Sbjct: 69 EENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLND 128
Query: 129 HAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDG 188
++P F E + I ESA++G R LD A DPD+ N++ Y ++ N +FSL V+ DG
Sbjct: 129 NSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDG 188
Query: 189 GKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYR 248
+PEL LE+ LDRE Q H L+LTA+DGG P RS T I + V D NDN P F R
Sbjct: 189 KPFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLR 248
Query: 249 ISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRS-TAQSTKHMFSLDEKTGMIKNNQSF 307
+ + EN P G+ +L++ ATD DEG N +++Y F T+++ +++F LD +G I
Sbjct: 249 VGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPI 308
Query: 308 DFEDVERYTMEVEAKDGG--GLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMV 365
DFE+ Y + A+D G + C + +++ D NDN+PE+++ SL++ +LE++P G V
Sbjct: 309 DFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTV 368
Query: 366 VALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVAT 425
V LF RD D G NGEV +I D+PF+I S N+Y L+T LDRE T Y + ++A+
Sbjct: 369 VGLFNVRDRDSGRNGEVSLDISPDLPFQI-KPSENHYSLLTSQPLDREATSHYIIELLAS 427
Query: 426 DRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNG 485
D G P L +I L ++D+NDNAP F+Q Y ++ EN PPG+ + V+ASDPD G N
Sbjct: 428 DAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNA 487
Query: 486 HISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSAN 545
++YSIV + ++ SS+V V+ + G +FAQR FD+E L+ + + RD GSP L AN
Sbjct: 488 RLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHAN 547
Query: 546 VSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLS 605
SL V V D NDNAP VL+P + SA +PRSA PG LVTKV AVDAD+GHNAWLS
Sbjct: 548 TSLHVFVLDENDNAPAVLHPRPDWEHSAP-QRLPRSAPPGSLVTKVTAVDADAGHNAWLS 606
Query: 606 YHVL-QASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF 664
Y +L Q++ PGLF + TGEVRTARAL + D+ Q+++V VRD G P LS+TAT+ LV
Sbjct: 607 YSLLPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVL 666
Query: 665 ADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIA------------ 712
D E +P SD + +++L YL+VALA +S+L L+ A
Sbjct: 667 EDEDPEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGG 726
Query: 713 ----LRLRRSLSPATWDCFHPGLCVKSGPVVPPNYSEGTL------PYSYNLCIAHTGT- 761
R + S SP + P L V S + Y E TL + Y C +
Sbjct: 727 GGQCCRRQDSPSPDFYKQSSPNLQVSSDGTL--KYMEVTLRPTDSQSHCYRTCFSPASDG 784
Query: 762 KEFNFLKCSVPLHSNEDMVCSVSPGALIPPHGGEDLTSHPETL---TSQAPPNTDWRFSQ 818
+F FL+ PL + ++ P A+ S TL + QAPPNTDWRFSQ
Sbjct: 785 SDFTFLR---PLSVQQPTALALEPDAI---------RSRSNTLRERSQQAPPNTDWRFSQ 832
Query: 819 AQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYG 878
AQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYG
Sbjct: 833 AQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYG 892
Query: 879 PQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
PQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 893 PQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
>gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precursor
[Homo sapiens]
Length = 934
Score = 803 bits (2074), Expect = 0.0
Identities = 441/913 (48%), Positives = 581/913 (63%), Gaps = 20/913 (2%)
Query: 30 SEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRV--SAEKLHFSVDAESGDLLVK 87
S I Y IPEE KG VGN+ +LGL + +SAR+ RV A + F V+ E+G++ V
Sbjct: 30 STVIHYEIPEEREKGFAVGNVVANLGLDLGSLSARRFRVVSGASRRFFEVNRETGEMFVN 89
Query: 88 NRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFDKKEIHLEIFESAS 147
+R+DRE++C C + LE VVENPL +F V VVI+D+ND+ P F +E+ LEI E+ +
Sbjct: 90 DRLDREELCGTLPSCTVTLELVVENPLELFSVEVVIQDINDNNPAFPTQEMKLEISEAVA 149
Query: 148 AGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPELSLEKLLDREEQRS 207
GTR L+ A DPD+ NS++ Y+++ N YF+L V+ D KY EL LE+ LDRE + S
Sbjct: 150 PGTRFPLESAHDPDVGSNSLQTYELSRNEYFALRVQTREDSTKYAELVLERALDREREPS 209
Query: 208 HSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSENLPPGSPVLQVTAT 267
L+LTALDGG P SA+ I I V D NDN PVF++ YR + E+ P G+ V+QV AT
Sbjct: 210 LQLVLTALDGGTPALSASLPIHIKVLDANDNAPVFNQSLYRARVLEDAPSGTRVVQVLAT 269
Query: 268 DQDEGVNAEINYYFRSTAQS-TKHMFSLDEKTGMIKNNQSFDFEDVERYTMEVEAKDGGG 326
D DEG N EI Y F S ++ + +F+LD TGM+ DFED + + + ++AKD G
Sbjct: 270 DLDEGPNGEIIYSFGSHNRAGVRQLFALDLVTGMLTIKGRLDFEDTKLHEIYIQAKDKGA 329
Query: 327 L--STQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDLDFGGNGEVRC 384
CKV++E++D NDN+PEI +TS+ + E++P G V+AL DLD G NG V C
Sbjct: 330 NPEGAHCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTDLDAGENGLVTC 389
Query: 385 NIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSSSRSITLYVAD 444
+ +PF + SS NY+ L T LDRE PEYN++I A D G P LS+ + + V+D
Sbjct: 390 EVPPGLPFSLTSSLKNYFTLKTSADLDRETVPEYNLSITARDAGTPSLSALTIVRVQVSD 449
Query: 445 INDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVASDLEPLAVSSY 504
INDN P Q+SY V++ ENN PGA I +S DPD N +S+ ++ E V Y
Sbjct: 450 INDNPPQSSQSSYDVYIEENNLPGAPILNLSVWDPDAPQNARLSFFLLEQGAETGLVGRY 509
Query: 505 VSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGDRNDNAPRVLY 564
+++ +G+V + D+E R F LT D G+P L+ N+S+ + V DRNDNAP+VLY
Sbjct: 510 FTINRDNGIVSSLVPLDYEDRREFELTAHISDGGTPVLATNISVNIFVTDRNDNAPQVLY 569
Query: 565 PALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTG 624
P P GS+ +M+PR G+LV++VV DAD+GHNAWLSY +L + LF++GL TG
Sbjct: 570 PR--PGGSSV-EMLPRGTSAGHLVSRVVGWDADAGHNAWLSYSLLGSPNQSLFAIGLHTG 626
Query: 625 EVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPDLSDRPVLSDP 684
++ TAR + D D+ RQ L V ++D G+P LS TATL + ++ E + +
Sbjct: 627 QISTARPVQDTDSPRQTLTVLIKDNGEPSLSTTATLTVSVTEDSPEARAEFPSGSAPREQ 686
Query: 685 QAELQFYLVVALALISVLFLLAVILAIALRLRR-SLSPATWDCFHPGLCVKSGPVVPPNY 743
+ L FYL+++L L+SV F++ V I ++ + S + L GP + +
Sbjct: 687 KKNLTFYLLLSLILVSVGFVVTVFGVIIFKVYKWKQSRDLYRAPVSSLYRTPGPSLHADA 746
Query: 744 SEGTL--PYSYNLCIAHTGTKEFNFLK----CSVPLHSNEDMVCSVSPGALIPPHGGEDL 797
G L P+ Y+ T ++ + L + PL S ++ + S P G E
Sbjct: 747 VRGGLMSPHLYHQVYLTTDSRRSDPLLKKPGAASPLASRQNTLRSCDPVFYRQVLGAESA 806
Query: 798 TSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEA 857
QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEA
Sbjct: 807 PPG-----QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEA 861
Query: 858 ADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGG 917
ADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGG
Sbjct: 862 ADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGG 921
Query: 918 NGNKKKSGKKEKK 930
NGNKKKSGKKEKK
Sbjct: 922 NGNKKKSGKKEKK 934
>gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precursor
[Homo sapiens]
Length = 938
Score = 801 bits (2069), Expect = 0.0
Identities = 448/933 (48%), Positives = 588/933 (63%), Gaps = 34/933 (3%)
Query: 21 LLPLFYPT--LSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAE--KLHFS 76
LL LFY + IRY +PEE +G+ VGN+A+D L +SAR+L+V+ E + HF
Sbjct: 17 LLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFR 76
Query: 77 VDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFDKK 136
VD +SG LL+KN IDRE +C C + LE V E PL ++ V I DVNDHAP+F ++
Sbjct: 77 VDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQ 136
Query: 137 EIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPELSL 196
++ LEI E+A G R L+ A D D+ NSI Y+++SN +F+L V+ SDG PEL L
Sbjct: 137 QLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLL 196
Query: 197 EKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSENLP 256
EK LDRE+Q + L+LTA+DGG+PPRS TA + +SV D NDN P F + YRIS+ E+ P
Sbjct: 197 EKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAP 256
Query: 257 PGSPVLQVTATDQDEGVNAEINYYFRS-TAQSTKHMFSLDEKTGMIKNNQSFDFEDVERY 315
G ++Q+ A+D D G + + +YF T +++FSL TG + DFE Y
Sbjct: 257 AGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYY 316
Query: 316 TMEVEAKDGGG--LSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRD 373
+V A+DGG + C + +++LD NDN+P I +TS + E++ PG VVAL +D
Sbjct: 317 EFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQD 376
Query: 374 LDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLS 433
D G NG+V I +PF + S+ N + LVT G LDRE Y++ + A+D G PPLS
Sbjct: 377 PDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLS 436
Query: 434 SSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVA 493
+ R+I L ++D+NDN P F Q S+ V V ENN PG + ++ASDPD GLN ISYS++
Sbjct: 437 THRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLE 496
Query: 494 SDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVG 553
++ SS++S++ Q+G V A R+FD+EQ + +QARD G+P LS+ V++R+ V
Sbjct: 497 PRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVL 556
Query: 554 DRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 613
D NDNAP VL P P GS +P S G+L+TKV AVD DSG+NAW+SY +L+A +
Sbjct: 557 DLNDNAPAVLRPRARP-GSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPD 615
Query: 614 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILP 673
P LF++ GEVRTA + D Q+L++ V+D G PPLS + TL + ++ ++P
Sbjct: 616 PSLFAVSRYAGEVRTAVPI-PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVP 674
Query: 674 DLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCV 733
DL + + ++ L YL V+L I + + + ++ LR + T CF G C
Sbjct: 675 DLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVT--CFPAGTCA 732
Query: 734 KSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLK-----------CSVPLHSNEDMVCS 782
+ EG P + L I F+ S P S+ M+
Sbjct: 733 C---LTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPTRSDSFMMVK 789
Query: 783 VSPGALIPPHGGEDL--TSHPETLT---SQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 837
SP A P GE + + P L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 790 -SPSA---PMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 845
Query: 838 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 897
NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 846 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 905
Query: 898 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 906 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
>gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 690 bits (1781), Expect = 0.0
Identities = 363/714 (50%), Positives = 490/714 (68%), Gaps = 3/714 (0%)
Query: 7 QRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKL 66
QR QVL LL + + IRYSIPEEL KGS VGN+ KDLGL +++ +
Sbjct: 5 QRHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGV 64
Query: 67 R-VSAEKLH-FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIE 124
R VS ++ FS++ +G L+ RIDRE++C + RC + +VE+ LN++ V V I
Sbjct: 65 RIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIV 124
Query: 125 DVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRV 184
D+ND+ P+F K+E+ ++I E+A+ +R L DPD+ +NS++ +K++ N +FS+ V+
Sbjct: 125 DINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQS 184
Query: 185 NSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSR 244
+ G KYPEL LE LDRE + + L+LTA+DGGDP RS+ A I ++V D NDN P+F++
Sbjct: 185 EAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQ 244
Query: 245 DEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNN 304
YR+S+ ENLP G+PVL VTATDQDEGV+ E+ Y F + +F L+ TG I +
Sbjct: 245 PVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTS 304
Query: 305 QSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGM 364
+ D+ED Y + VEA+DG GL + KV+I ILD NDN PE+++TS S I E++PPG
Sbjct: 305 ANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGT 364
Query: 365 VVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVA 424
V+ALF+ D D G NG V C+I +PF++ S NYY+LVT+ ALDRE+ YN+T+ A
Sbjct: 365 VIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTA 424
Query: 425 TDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLN 484
TD+G PPLS+ I+L VAD NDN P F +SY V+V ENNP GASI V+A DPD+ N
Sbjct: 425 TDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQN 484
Query: 485 GHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSA 544
+SYS+ L+ +SSYVS+++ +G+++A R+FD+EQLR L + A D G P LS+
Sbjct: 485 AQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSS 544
Query: 545 NVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWL 604
NVSL + V D+NDNAP +LYPAL DGS ++ PRSAEPGYLVTKVVAVD DSG NAWL
Sbjct: 545 NVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWL 604
Query: 605 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF 664
SY +L+ASEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL +
Sbjct: 605 SYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAV 664
Query: 665 ADNLQEILPDL-SDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRR 717
AD + +IL DL S P ++L YLVVA+A +S +FL VI+ +ALRL+R
Sbjct: 665 ADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQR 718
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,059,443
Number of Sequences: 37866
Number of extensions: 1806850
Number of successful extensions: 10566
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3443
Number of HSP's gapped (non-prelim): 700
length of query: 930
length of database: 18,247,518
effective HSP length: 112
effective length of query: 818
effective length of database: 14,006,526
effective search space: 11457338268
effective search space used: 11457338268
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.