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Search of human proteins with 169164663
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169164663 PREDICTED: similar to mediator complex subunit 15
[Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169164663 PREDICTED: similar to mediator complex subunit 15 [... 492 e-140
gi|169164311 PREDICTED: similar to hCG2014450 [Homo sapiens] 365 e-101
gi|169164745 PREDICTED: similar to hCG2014450 [Homo sapiens] 365 e-101
gi|169163050 PREDICTED: hypothetical protein LOC100127989 [Homo ... 365 e-101
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 129 3e-30
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 129 3e-30
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 33 0.20
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 33 0.26
gi|91208420 bassoon protein [Homo sapiens] 32 0.35
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 32 0.35
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 32 0.35
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 32 0.45
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 32 0.45
gi|145701025 multiple EGF-like-domains 8 [Homo sapiens] 32 0.45
gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo ... 32 0.59
gi|239740786 PREDICTED: hypothetical protein [Homo sapiens] 32 0.59
gi|239740731 PREDICTED: hypothetical protein [Homo sapiens] 32 0.59
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 32 0.59
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 32 0.59
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens] 32 0.59
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 31 1.0
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 31 1.0
gi|239753972 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|110832843 TBP-associated factor 4 [Homo sapiens] 30 1.3
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 30 1.3
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 30 1.3
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 30 1.3
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 30 1.3
gi|28558973 mediator complex subunit 14 [Homo sapiens] 30 1.3
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 30 1.7
>gi|169164663 PREDICTED: similar to mediator complex subunit 15
[Homo sapiens]
Length = 229
Score = 492 bits (1267), Expect = e-140
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MAVVSGILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHPL 60
MAVVSGILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHPL
Sbjct: 1 MAVVSGILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHPL 60
Query: 61 TLFNHSLYRIFMPTMIAIHSPPITYIQLGWASQRAPVVCTQKHRLEDDEQQSIPSVLQGL 120
TLFNHSLYRIFMPTMIAIHSPPITYIQLGWASQRAPVVCTQKHRLEDDEQQSIPSVLQGL
Sbjct: 61 TLFNHSLYRIFMPTMIAIHSPPITYIQLGWASQRAPVVCTQKHRLEDDEQQSIPSVLQGL 120
Query: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWRKRATPNCSPRPLLSKLEGTVP 180
VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWRKRATPNCSPRPLLSKLEGTVP
Sbjct: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWRKRATPNCSPRPLLSKLEGTVP 180
Query: 181 RPHPMFTCQQVVCSVFWAQDRLAIASAPTPGAHAPSPPQHRCGSACLGP 229
RPHPMFTCQQVVCSVFWAQDRLAIASAPTPGAHAPSPPQHRCGSACLGP
Sbjct: 181 RPHPMFTCQQVVCSVFWAQDRLAIASAPTPGAHAPSPPQHRCGSACLGP 229
>gi|169164311 PREDICTED: similar to hCG2014450 [Homo sapiens]
Length = 297
Score = 365 bits (937), Expect = e-101
Identities = 177/222 (79%), Positives = 188/222 (84%), Gaps = 14/222 (6%)
Query: 1 MAVVSGILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHPL 60
MAVVSGILGIPG IGAPPRAPG+T GRGLQAH PTAPGATD TAVPMPAAPGCHPGQHPL
Sbjct: 1 MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60
Query: 61 TLFNHSLYRIFMPTMIAIHSPPITYIQLGWASQRAPVVCTQKHRLEDDEQQSIPSVLQGL 120
TLFNHSLY IFMPT+IAIHSPPITYIQLGWAS+RAPVVCT+KHRLEDDEQQSI S+LQGL
Sbjct: 61 TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGL 120
Query: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWRKRATPNCSPRPLLSKLEGTVP 180
VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGW ++ATP+ SPR LLSK EGTVP
Sbjct: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVP 180
Query: 181 RPHPMFTCQQVVCSVFWAQDRLAIASAPTPGAHAPSPPQHRC 222
RPHP+FTC+Q A A G P+P H C
Sbjct: 181 RPHPVFTCRQ--------------AGAGARGILLPAPLCHSC 208
>gi|169164745 PREDICTED: similar to hCG2014450 [Homo sapiens]
Length = 297
Score = 365 bits (937), Expect = e-101
Identities = 177/222 (79%), Positives = 188/222 (84%), Gaps = 14/222 (6%)
Query: 1 MAVVSGILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHPL 60
MAVVSGILGIPG IGAPPRAPG+T GRGLQAH PTAPGATD TAVPMPAAPGCHPGQHPL
Sbjct: 1 MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60
Query: 61 TLFNHSLYRIFMPTMIAIHSPPITYIQLGWASQRAPVVCTQKHRLEDDEQQSIPSVLQGL 120
TLFNHSLY IFMPT+IAIHSPPITYIQLGWAS+RAPVVCT+KHRLEDDEQQSI SVLQGL
Sbjct: 61 TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSVLQGL 120
Query: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWRKRATPNCSPRPLLSKLEGTVP 180
VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGW ++ATP+ SPR LLSK +GTVP
Sbjct: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPQGTVP 180
Query: 181 RPHPMFTCQQVVCSVFWAQDRLAIASAPTPGAHAPSPPQHRC 222
RPHP+FTC+Q A A G P+P H C
Sbjct: 181 RPHPVFTCRQ--------------AGAGARGILLPAPLCHSC 208
>gi|169163050 PREDICTED: hypothetical protein LOC100127989 [Homo
sapiens]
Length = 297
Score = 365 bits (937), Expect = e-101
Identities = 177/222 (79%), Positives = 188/222 (84%), Gaps = 14/222 (6%)
Query: 1 MAVVSGILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHPL 60
MAVVSGILGIPG IGAPPRAPG+T GRGLQAH PTAPGATD TAVPMPAAPGCHPGQHPL
Sbjct: 1 MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60
Query: 61 TLFNHSLYRIFMPTMIAIHSPPITYIQLGWASQRAPVVCTQKHRLEDDEQQSIPSVLQGL 120
TLFNHSLY IFMPT+IAIHSPPITYIQLGWAS+RAPVVCT+KHRLEDDEQQSI SVLQGL
Sbjct: 61 TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSVLQGL 120
Query: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWRKRATPNCSPRPLLSKLEGTVP 180
VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGW ++ATP+ SPR LLSK +GTVP
Sbjct: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPQGTVP 180
Query: 181 RPHPMFTCQQVVCSVFWAQDRLAIASAPTPGAHAPSPPQHRC 222
RPHP+FTC+Q A A G P+P H C
Sbjct: 181 RPHPVFTCRQ--------------AGAGARGILLPAPLCHSC 208
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 129 bits (323), Expect = 3e-30
Identities = 63/90 (70%), Positives = 71/90 (78%), Gaps = 10/90 (11%)
Query: 62 LFNHSLYRIFMPTMIAIHSPPITYIQLGWASQRAPVVCTQKHRLEDDEQQSIPSVLQGLV 121
+FNHSLYR F+P M AIH PPIT APVVCT+K RLEDDE+QSIPSVLQG V
Sbjct: 633 VFNHSLYRTFVPAMTAIHGPPIT----------APVVCTRKRRLEDDERQSIPSVLQGEV 682
Query: 122 ARLEPKCMINLDPSHCSNNGTVRLICKLGE 151
ARL+PK ++NLDPSHCSNNGTV LICKL +
Sbjct: 683 ARLDPKFLVNLDPSHCSNNGTVHLICKLDD 712
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 129 bits (323), Expect = 3e-30
Identities = 63/90 (70%), Positives = 71/90 (78%), Gaps = 10/90 (11%)
Query: 62 LFNHSLYRIFMPTMIAIHSPPITYIQLGWASQRAPVVCTQKHRLEDDEQQSIPSVLQGLV 121
+FNHSLYR F+P M AIH PPIT APVVCT+K RLEDDE+QSIPSVLQG V
Sbjct: 593 VFNHSLYRTFVPAMTAIHGPPIT----------APVVCTRKRRLEDDERQSIPSVLQGEV 642
Query: 122 ARLEPKCMINLDPSHCSNNGTVRLICKLGE 151
ARL+PK ++NLDPSHCSNNGTV LICKL +
Sbjct: 643 ARLDPKFLVNLDPSHCSNNGTVHLICKLDD 672
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 33.1 bits (74), Expect = 0.20
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 12 GGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPA---APGCHPGQHP 59
GG G P +PG+T G P AP P PA PG P QHP
Sbjct: 5 GGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHP 55
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 32.7 bits (73), Expect = 0.26
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 17 PPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHPLTLFNHSLYRIFMPTMI 76
PP P S +G PGA + P PA PG P + L SL R+ P
Sbjct: 61 PPPGPASASG----------PGAAGPASSPPPAGPGPGPALPAVRL---SLVRLGEPDSA 107
Query: 77 AIHSPPITYIQLGWASQR 94
PP T LG R
Sbjct: 108 GAGEPPATPAGLGSGGDR 125
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 32.3 bits (72), Expect = 0.35
Identities = 22/55 (40%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 11 PGGIGAPPRAPGSTTGRGLQAHCPT------APGATDQTAVPMPAAPGCHPGQHP 59
PGG G P PG G G P A GA TAVP PG PG P
Sbjct: 18 PGGAGPGP-GPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPGPGPGP 71
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 32.3 bits (72), Expect = 0.35
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 5 SGILGIPGGIGAPPRA-----PGSTTGRGLQAHCPTAPGATDQTAVPMPAAPG 52
+G+ P G G PR P G A P AP A+ TA P PAAPG
Sbjct: 187 AGLSTEPAGPGTAPRPFLPGQPAEVDGNPPPA-APEAPAASPSTASPAPAAPG 238
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 32.3 bits (72), Expect = 0.35
Identities = 26/75 (34%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 11 PGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCH---PGQHPLTLFNHSL 67
P G P APG H P APG T+ P APG H PG HP H
Sbjct: 303 PPAPGVHPPAPG--------VH-PPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPP 353
Query: 68 YRIFMPTMIAIHSPP 82
P +H PP
Sbjct: 354 APGVHPPAPGVHPPP 368
Score = 32.3 bits (72), Expect = 0.35
Identities = 24/75 (32%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 11 PGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCH---PGQHPLTLFNHSL 67
P G P APG H P APG P APG H PG HP H
Sbjct: 352 PPAPGVHPPAPGVHPPPSAGVH-PQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQ 410
Query: 68 YRIFMPTMIAIHSPP 82
P+ +H P
Sbjct: 411 PPGVHPSAPGVHPQP 425
Score = 30.4 bits (67), Expect = 1.3
Identities = 24/77 (31%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 11 PGGIGAPPRAPGSTTGRGLQAHC---PTAPGATDQTAVPMPAAPGCH---PGQHPLTLFN 64
PGG+ PP P G P APG V P A G H PG HP
Sbjct: 256 PGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGV 315
Query: 65 HSLYRIFMPTMIAIHSP 81
H P +H P
Sbjct: 316 HPPAPGVHPPTSGVHPP 332
Score = 29.6 bits (65), Expect = 2.2
Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 11 PGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCH---PGQHP 59
P G P APG P APG Q P+APG H PG HP
Sbjct: 388 PQAPGVHPPAPGMH---------PQAPGVHPQPPGVHPSAPGVHPQPPGVHP 430
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 32.0 bits (71), Expect = 0.45
Identities = 19/54 (35%), Positives = 20/54 (37%)
Query: 15 GAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHPLTLFNHSLY 68
G P PG T G G A P A QT PAA C P + F Y
Sbjct: 165 GGPASGPGVTPGLGAPAGAPGPLPAPSQTPPGPPAAAACDPTKDDKGYFRRLKY 218
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 32.0 bits (71), Expect = 0.45
Identities = 19/54 (35%), Positives = 20/54 (37%)
Query: 15 GAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHPLTLFNHSLY 68
G P PG T G G A P A QT PAA C P + F Y
Sbjct: 165 GGPASGPGVTPGLGAPAGAPGPLPAPSQTPPGPPAAAACDPTKDDKGYFRRLKY 218
>gi|145701025 multiple EGF-like-domains 8 [Homo sapiens]
Length = 2778
Score = 32.0 bits (71), Expect = 0.45
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 151 ECPGGPGWRKRATPNCSPRPLLSKLEGTVPRPHPMFTCQQVVCSVFWAQDRLAIASAPTP 210
EC G++ +C+ L G P P FTC VC + W D PTP
Sbjct: 1032 ECHCQRGYQGDGISHCNRTCLEDCGHGVCSGP-PDFTC---VCDLGWTSD----LPPPTP 1083
Query: 211 GAHAPSPPQHRCGSAC 226
AP PP RC C
Sbjct: 1084 ---APGPPAPRCSRDC 1096
>gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo
sapiens]
Length = 138
Score = 31.6 bits (70), Expect = 0.59
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 1 MAVVSGILGIPGGIGAP-PRAP----GSTTGRGLQAHCPTAPGAT--------DQTAVPM 47
+AV++ + + + P PRAP G H P PG+ P
Sbjct: 5 VAVLAAVAPVVASVYLPAPRAPFELWPDPEREGQPPHLPPTPGSLGLPGSGHGSSGPAPP 64
Query: 48 PAAPGCHPGQHPLTLFNHSLYRIFMPTMIAIHSPPITYIQLGW 90
PA+P HP + PL + + PT + P ++ LGW
Sbjct: 65 PASPS-HPHRLPLQPLGFLSFLVSSPTHLQRPPPLLSRCDLGW 106
>gi|239740786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 31.6 bits (70), Expect = 0.59
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 1 MAVVSGILGIPGGIGAP-PRAP----GSTTGRGLQAHCPTAPGAT--------DQTAVPM 47
+AV++ + + + P PRAP G H P PG+ P
Sbjct: 5 VAVLAAVAPVVASVYLPAPRAPFELWPDPEREGQPPHLPPTPGSLGLPGSGHGSSGPAPP 64
Query: 48 PAAPGCHPGQHPLTLFNHSLYRIFMPTMIAIHSPPITYIQLGW 90
PA+P HP + PL + + PT + P ++ LGW
Sbjct: 65 PASPS-HPHRLPLQPLGFLSFLVSSPTHLQRPPPLLSRCDLGW 106
>gi|239740731 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 31.6 bits (70), Expect = 0.59
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 1 MAVVSGILGIPGGIGAP-PRAP----GSTTGRGLQAHCPTAPGAT--------DQTAVPM 47
+AV++ + + + P PRAP G H P PG+ P
Sbjct: 5 VAVLAAVAPVVASVYLPAPRAPFELWPDPEREGQPPHLPPTPGSLGLPGSGHGSSGPAPP 64
Query: 48 PAAPGCHPGQHPLTLFNHSLYRIFMPTMIAIHSPPITYIQLGW 90
PA+P HP + PL + + PT + P ++ LGW
Sbjct: 65 PASPS-HPHRLPLQPLGFLSFLVSSPTHLQRPPPLLSRCDLGW 106
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 31.6 bits (70), Expect = 0.59
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 12 GGIGAPPRAP-GSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHP 59
GG G R+P G +QA P APG+ A P P PG G P
Sbjct: 255 GGAGDSSRSPAGLRRANSVQASRP-APGSVQSPAPPQPGQPGTPGGSRP 302
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 31.6 bits (70), Expect = 0.59
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 12 GGIGAPPRAP-GSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHP 59
GG G R+P G +QA P APG+ A P P PG G P
Sbjct: 251 GGAGDSSRSPAGLRRANSVQASRP-APGSVQSPAPPQPGQPGTPGGSRP 298
>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
Length = 1541
Score = 31.6 bits (70), Expect = 0.59
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 19 RAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHPLT 61
R P TG G + CP PG+ + M PG +P HP T
Sbjct: 1148 RCPPGFTGSGCEQACP--PGSFGEDCAQMCQCPGENPACHPAT 1188
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 30.8 bits (68), Expect = 1.0
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 1 MAVVSGILGIPGGIG--APPRAPGSTTGRGLQAH----------CPTAPGATDQTAVPMP 48
M V G G PG +G PP APG GL H P P ++P P
Sbjct: 816 MLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGP 875
Query: 49 AAPGCHPGQ 57
P PG+
Sbjct: 876 PGPRGPPGE 884
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 6 GILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPG 56
G GIPGG+G+P R GS RGL PG + P P P PG
Sbjct: 1533 GPQGIPGGVGSPGR-DGSPGQRGL-------PGKDGSSGPPGPPGPIGIPG 1575
>gi|239753972 PREDICTED: hypothetical protein [Homo sapiens]
Length = 298
Score = 30.4 bits (67), Expect = 1.3
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 17 PPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHPLTLFNHSLYRIFM---P 73
PP P + H PT +T + +P P HP HP F H L +F+ P
Sbjct: 91 PPIHPSTNPPIHPSTH-PTIHPSTHPPSTYLPIHPSAHPLIHP---FIHPLTHLFIHPPP 146
Query: 74 TMIAIHSPPITYIQL 88
T IH P + I L
Sbjct: 147 THSPIHPPTHSSIHL 161
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 18 PRAPGST--TGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHP 59
P APG+ T + A P AP A A P PAAP P P
Sbjct: 231 PAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP 274
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 4 VSGILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVP 46
V G++G PG IG PP PG+ G Q P PG Q P
Sbjct: 890 VIGMMGFPGAIG-PPGPPGNPGTPG-QRGSPGIPGVKGQRGTP 930
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 6 GILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPG 52
G LG PG +G P PG P PGA + AV MP PG
Sbjct: 718 GSLGCPGKMGEPG-LPGK----------PGLPGAKGEPAVAMPGGPG 753
Score = 27.7 bits (60), Expect = 8.5
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 4 VSGILGIPGGIGAP--PRAPGSTTGRGLQAHCPTAPGATDQTAVP-MPAAPGCHPG 56
V GI G+PG G+P P PG+T GL P G+ + P +P G +PG
Sbjct: 92 VRGISGLPGFSGSPGLPGTPGNTGPYGL-VGVPGCSGSKGEQGFPGLPGTLG-YPG 145
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 4 VSGILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVP 46
V G++G PG IG PP PG+ G Q P PG Q P
Sbjct: 890 VIGMMGFPGAIG-PPGPPGNPGTPG-QRGSPGIPGVKGQRGTP 930
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 6 GILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPG 52
G LG PG +G P PG P PGA + AV MP PG
Sbjct: 718 GSLGCPGKMGEPG-LPGK----------PGLPGAKGEPAVAMPGGPG 753
Score = 27.7 bits (60), Expect = 8.5
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 4 VSGILGIPGGIGAP--PRAPGSTTGRGLQAHCPTAPGATDQTAVP-MPAAPGCHPG 56
V GI G+PG G+P P PG+T GL P G+ + P +P G +PG
Sbjct: 92 VRGISGLPGFSGSPGLPGTPGNTGPYGL-VGVPGCSGSKGEQGFPGLPGTLG-YPG 145
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 4 VSGILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVP 46
V G++G PG IG PP PG+ G Q P PG Q P
Sbjct: 890 VIGMMGFPGAIG-PPGPPGNPGTPG-QRGSPGIPGVKGQRGTP 930
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 6 GILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPG 52
G LG PG +G P PG P PGA + AV MP PG
Sbjct: 718 GSLGCPGKMGEPG-LPGK----------PGLPGAKGEPAVAMPGGPG 753
Score = 27.7 bits (60), Expect = 8.5
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 4 VSGILGIPGGIGAP--PRAPGSTTGRGLQAHCPTAPGATDQTAVP-MPAAPGCHPG 56
V GI G+PG G+P P PG+T GL P G+ + P +P G +PG
Sbjct: 92 VRGISGLPGFSGSPGLPGTPGNTGPYGL-VGVPGCSGSKGEQGFPGLPGTLG-YPG 145
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 4 VSGILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVP 46
V G++G PG IG PP PG+ G Q P PG Q P
Sbjct: 890 VIGMMGFPGAIG-PPGPPGNPGTPG-QRGSPGIPGVKGQRGTP 930
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 6 GILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPG 52
G LG PG +G P PG P PGA + AV MP PG
Sbjct: 718 GSLGCPGKMGEPG-LPGK----------PGLPGAKGEPAVAMPGGPG 753
Score = 27.7 bits (60), Expect = 8.5
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 4 VSGILGIPGGIGAP--PRAPGSTTGRGLQAHCPTAPGATDQTAVP-MPAAPGCHPG 56
V GI G+PG G+P P PG+T GL P G+ + P +P G +PG
Sbjct: 92 VRGISGLPGFSGSPGLPGTPGNTGPYGL-VGVPGCSGSKGEQGFPGLPGTLG-YPG 145
>gi|28558973 mediator complex subunit 14 [Homo sapiens]
Length = 1454
Score = 30.4 bits (67), Expect = 1.3
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 15/65 (23%)
Query: 12 GGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHPLTLFNHSLYRIF 71
GG G PP AP P PGA AV AA PG TL L+R +
Sbjct: 19 GGSGGPPSAPA-----------PPPPGA----AVAAAAAAAASPGYRLSTLIEFLLHRAY 63
Query: 72 MPTMI 76
M+
Sbjct: 64 SELMV 68
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 11 PGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPG-----QHPLTL 62
P P A +T G AP T A+P PA PG PG HP+ L
Sbjct: 43 PASSSDPAAAAAATAAPGQTPASAQAPAQTPAPALPGPALPGPFPGGRVVRLHPVIL 99
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,808,666
Number of Sequences: 37866
Number of extensions: 765786
Number of successful extensions: 3573
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 3393
Number of HSP's gapped (non-prelim): 274
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.