Search of human proteins with 169161813

Search of human proteins with 169161813

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169161813 PREDICTED: similar to hCG1644176 [Homo sapiens]
         (194 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169161813 PREDICTED: similar to hCG1644176 [Homo sapiens]          390   e-109
gi|169162584 PREDICTED: hypothetical protein LOC100132108 [Homo ...   388   e-108
gi|25777615 proteasome 26S non-ATPase subunit 7 [Homo sapiens]        292   1e-79
gi|4503519 eukaryotic translation initiation factor 3, subunit 5...    57   1e-08
gi|34147637 COP9 signalosome subunit 6 [Homo sapiens]                  41   6e-04
gi|162809334 pregnancy-zone protein [Homo sapiens]                     28   3.7  
gi|120952851 strumpellin [Homo sapiens]                                28   6.4  
gi|57863255 zinc finger, SWIM domain containing 3 [Homo sapiens]       27   8.4  

>gi|169161813 PREDICTED: similar to hCG1644176 [Homo sapiens]
          Length = 194

 Score =  390 bits (1003), Expect = e-109
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MKVLDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDT 60
           MKVLDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDT
Sbjct: 1   MKVLDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDT 60

Query: 61  AFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETGAEEA 120
           AFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETGAEEA
Sbjct: 61  AFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETGAEEA 120

Query: 121 KEIGVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQFI 180
           KEIGVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQFI
Sbjct: 121 KEIGVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQFI 180

Query: 181 YQLQVFKLLPVISL 194
           YQLQVFKLLPVISL
Sbjct: 181 YQLQVFKLLPVISL 194


>gi|169162584 PREDICTED: hypothetical protein LOC100132108 [Homo
           sapiens]
          Length = 194

 Score =  388 bits (997), Expect = e-108
 Identities = 193/194 (99%), Positives = 193/194 (99%)

Query: 1   MKVLDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDT 60
           MKVLDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDT
Sbjct: 1   MKVLDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDT 60

Query: 61  AFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETGAEEA 120
           AFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSET AEEA
Sbjct: 61  AFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETAAEEA 120

Query: 121 KEIGVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQFI 180
           KEIGVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQFI
Sbjct: 121 KEIGVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQFI 180

Query: 181 YQLQVFKLLPVISL 194
           YQLQVFKLLPVISL
Sbjct: 181 YQLQVFKLLPVISL 194


>gi|25777615 proteasome 26S non-ATPase subunit 7 [Homo sapiens]
          Length = 324

 Score =  292 bits (747), Expect = 1e-79
 Identities = 153/197 (77%), Positives = 167/197 (84%), Gaps = 4/197 (2%)

Query: 2   KVLDVSSSFTVPFNEDDKDNC--FLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKND 59
           KVLDVS+SF VPF+EDDKD+   FL HDYL+N Y MFK+VNARERIV WYH GPKLHKND
Sbjct: 46  KVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKND 105

Query: 60  TAFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVE-VYEDGTSALKTFEHVTSETGAE 118
            A NE+MKRYC NSVLV  D+KPKDLGLPTEAYISVE V++DGT   KTFEHVTSE GAE
Sbjct: 106 IAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAE 165

Query: 119 EAKEIGVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQ 178
           EA+E+GV+HLL+DIKDTTVGTLSQ ITNQV  LKGLNSKLL  RSYLEKVATGKL  NHQ
Sbjct: 166 EAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQ 225

Query: 179 FIYQLQ-VFKLLPVISL 194
            IYQLQ VF LLP +SL
Sbjct: 226 IIYQLQDVFNLLPDVSL 242


>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
           epsilon, 47kDa [Homo sapiens]
          Length = 357

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 46/198 (23%), Positives = 98/198 (49%), Gaps = 17/198 (8%)

Query: 4   LDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDTAFN 63
           ++V++ F+VP NE + D   +  ++ KN Y + K+V+  E I+ WY  G  + ++    +
Sbjct: 129 VEVTNCFSVPHNESE-DEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIH 187

Query: 64  EIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETGAEEAKEI 123
           E   R   N + +T D   ++  +  +AY+S  +   G +    F  +T +    + + I
Sbjct: 188 EYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERI 247

Query: 124 GVKHLLQDI--KDTTVGTLSQCITNQVLDLKGLNSKLLGTRS----YLEKVATGKLSTNH 177
           GV  +++     +  +G     +++ +  + G ++++    S    Y E V +GK+S ++
Sbjct: 248 GVDLIMKTCFSPNRVIG-----LSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADN 302

Query: 178 ---QFIYQL--QVFKLLP 190
              +F+  L  QV K++P
Sbjct: 303 TVGRFLMSLVNQVPKIVP 320


>gi|34147637 COP9 signalosome subunit 6 [Homo sapiens]
          Length = 327

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 11/196 (5%)

Query: 4   LDVSSSFTVPFNEDDKDNCFLAHDYLKNTYRMFKRVNARERIVEWYHIGPKLHKNDTAFN 63
           ++V +SF +  +   ++   +  +Y       FK+V      + WY  G     +D   +
Sbjct: 81  IEVMNSFEL-LSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVH 139

Query: 64  EIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETGAEEAKEI 123
           + +     + + +  +   K   LP   + SV    +G + +  F  +T     EEA+ I
Sbjct: 140 KQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEATM-LFAELTYTLATEEAERI 198

Query: 124 GVKHLLQDIKDTTVG-----TLSQCITNQVLDLKGLNSKLLGTRSYLEKVATGKLSTNHQ 178
           GV H+    + T  G     T+++ +  Q   +K L+S++     Y++    G++  NH+
Sbjct: 199 GVDHV---ARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHE 255

Query: 179 FIYQLQVF-KLLPVIS 193
            + +       LPV+S
Sbjct: 256 ILREAYALCHCLPVLS 271


>gi|162809334 pregnancy-zone protein [Homo sapiens]
          Length = 1482

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 70  CRNSVLVTSDMKPKDLGLPTEAYISVEVYEDGTSALKTFEHVTSETGAEEAKEIGVKHLL 129
           C N V+   ++K KD  + T     + V  +G    KTF  +T  +GA  ++++ +K   
Sbjct: 889 CGNEVVEVPEIKRKDTVIKT-----LLVEAEGIEQEKTFSSMTCASGANVSEQLSLKLPS 943

Query: 130 QDIKDTTVGTLS 141
             +K++   + S
Sbjct: 944 NVVKESARASFS 955


>gi|120952851 strumpellin [Homo sapiens]
          Length = 1159

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 14/148 (9%)

Query: 55  LHKNDTAFNEIMKRY--CRNSVLVTSDMKPK---DLGLPTEAY--ISVEVYEDGTSALKT 107
           LH  D+A +   KR    ++ +L  S   P+    L L T  +  I  E+++   S  +T
Sbjct: 378 LHTADSACDPNNKRLRQIKDQILTDSRYNPRILFQLLLDTAQFEFILKEMFKQMLSEKQT 437

Query: 108 -FEHVTSETGAEEAKEI-----GVKHLLQDIKDTTVGTLSQCITNQVLDLKGLNSKLLGT 161
            +EH   E G+E   E+     GVK L +  K+  +    + I+ Q+L L   +S   G 
Sbjct: 438 KWEHYKKE-GSERMTELADVFSGVKPLTRVEKNENLQAWFREISKQILSLNYDDSTAAGR 496

Query: 162 RSYLEKVATGKLSTNHQFIYQLQVFKLL 189
           ++     A  ++   HQ    LQV + L
Sbjct: 497 KTVQLIQALEEVQEFHQLESNLQVCQFL 524


>gi|57863255 zinc finger, SWIM domain containing 3 [Homo sapiens]
          Length = 696

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 54  KLHKNDT--AFNEIMKRYCRNSVLVTSDMKPKDLGLPTEAYISVEVY 98
           KLH++    +F  +MK   R +V VTS+   K+L   ++A +  +++
Sbjct: 317 KLHRSSANPSFKRLMKEALREAVFVTSEASLKNLCQMSQAVLDEDLF 363


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,472,228
Number of Sequences: 37866
Number of extensions: 251496
Number of successful extensions: 618
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 9
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.