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Search of human proteins with 169160677
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169160677 PREDICTED: similar to Tctex1 domain containing 4
[Homo sapiens]
(127 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169160677 PREDICTED: similar to Tctex1 domain containing 4 [H... 245 8e-66
gi|61966721 Tctex1 domain containing 4 [Homo sapiens] 170 3e-43
gi|229090471 Tctex1 domain containing 2 [Homo sapiens] 61 2e-10
gi|239735600 Tctex1 domain containing 1 [Homo sapiens] 56 7e-09
gi|28372535 t-complex-associated-testis-expressed 3 [Homo sapiens] 47 4e-06
gi|5730085 dynein, light chain, Tctex-type 1 [Homo sapiens] 42 1e-04
gi|239753813 PREDICTED: similar to dynein, light chain, Tctex-ty... 36 0.009
gi|239748376 PREDICTED: hypothetical protein XP_002346645 [Homo ... 36 0.009
gi|239742301 PREDICTED: hypothetical protein XP_002342481 [Homo ... 36 0.009
gi|5730087 dynein, light chain, Tctex-type 3 [Homo sapiens] 33 0.059
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin... 31 0.22
gi|169208948 PREDICTED: similar to COMM domain containing 4 [Hom... 28 1.5
gi|134254450 patched isoform S [Homo sapiens] 28 2.5
gi|134254435 patched isoform S [Homo sapiens] 28 2.5
gi|134254468 patched isoform S [Homo sapiens] 28 2.5
gi|134254452 patched isoform S [Homo sapiens] 28 2.5
gi|134254432 patched isoform L' [Homo sapiens] 28 2.5
gi|134254466 patched isoform M [Homo sapiens] 28 2.5
gi|134254446 patched isoform L [Homo sapiens] 28 2.5
gi|71274152 hypothetical protein LOC388939 [Homo sapiens] 28 2.5
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 27 3.2
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 27 3.2
gi|169208214 PREDICTED: similar to COMM domain containing 4 [Hom... 27 5.5
gi|41350212 bromodomain containing 7 [Homo sapiens] 26 7.2
gi|4758426 guanine deaminase [Homo sapiens] 26 7.2
gi|239754740 PREDICTED: similar to hCG2039506 [Homo sapiens] 26 9.4
gi|169162399 PREDICTED: hypothetical protein [Homo sapiens] 26 9.4
gi|169162742 PREDICTED: hypothetical protein [Homo sapiens] 26 9.4
gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens] 26 9.4
gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens] 26 9.4
>gi|169160677 PREDICTED: similar to Tctex1 domain containing 4 [Homo
sapiens]
Length = 127
Score = 245 bits (625), Expect = 8e-66
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MASRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSIDXXXXXXXACYSSDEPARLVRELCE 60
MASRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSID ACYSSDEPARLVRELCE
Sbjct: 1 MASRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSIDXXXXXXXACYSSDEPARLVRELCE 60
Query: 61 QVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVAT 120
QVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVAT
Sbjct: 61 QVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVAT 120
Query: 121 VHGLYCE 127
VHGLYCE
Sbjct: 121 VHGLYCE 127
>gi|61966721 Tctex1 domain containing 4 [Homo sapiens]
Length = 221
Score = 170 bits (430), Expect = 3e-43
Identities = 83/84 (98%), Positives = 83/84 (98%)
Query: 44 ACYSSDEPARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARD 103
ACYSSDE ARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARD
Sbjct: 138 ACYSSDEAARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARD 197
Query: 104 GLASVSYTNTSLFAVATVHGLYCE 127
GLASVSYTNTSLFAVATVHGLYCE
Sbjct: 198 GLASVSYTNTSLFAVATVHGLYCE 221
Score = 79.3 bits (194), Expect = 7e-16
Identities = 36/36 (100%), Positives = 36/36 (100%)
Query: 1 MASRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSID 36
MASRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSID
Sbjct: 1 MASRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSID 36
>gi|229090471 Tctex1 domain containing 2 [Homo sapiens]
Length = 142
Score = 61.2 bits (147), Expect = 2e-10
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 46 YSSDEPARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGL 105
YS +E +L + L E + +L+E+ RYK+V VV+G + G+GV + SR WD D
Sbjct: 61 YSPEEMPQLTKHLSENIKDKLKEMGFDRYKMVVQVVIGEQRGEGVFMASRCFWDADTDNY 120
Query: 106 ASVSYTNTSLFAVATVHGLY 125
+ N SLF V G +
Sbjct: 121 THDVFMNDSLFCVVAAFGCF 140
>gi|239735600 Tctex1 domain containing 1 [Homo sapiens]
Length = 179
Score = 56.2 bits (134), Expect = 7e-09
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 46 YSSDEPARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGL 105
Y + ++ + + E + ++++L PRYKL+ V +G Q + + SR LWD D
Sbjct: 98 YEPELCRQMTKTISEVIKAQVKDLMIPRYKLIVIVHIGQLNRQSILIGSRCLWDPKSDTF 157
Query: 106 ASVSYTNTSLFAVATVHGLYCE 127
+S + N+SLFA+A V+ +Y E
Sbjct: 158 SSYVFRNSSLFALANVYAVYLE 179
>gi|28372535 t-complex-associated-testis-expressed 3 [Homo sapiens]
Length = 198
Score = 47.0 bits (110), Expect = 4e-06
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 52 ARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYT 111
+ L EL +++ + ++E RYK + V+ + GQ +++ SR +WD+A D + +
Sbjct: 123 SHLSLELADRILLAVKEFGYHRYKFIIKVLFIQKTGQAINIASRWIWDIAWDSWVAAKHE 182
Query: 112 NTSLFAVATVHGLYCE 127
S A+ V LY E
Sbjct: 183 AESYVALVLVFALYYE 198
>gi|5730085 dynein, light chain, Tctex-type 1 [Homo sapiens]
Length = 113
Score = 42.0 bits (97), Expect = 1e-04
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 46 YSSDEPARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGL 105
Y + + + EQ +L +L P +K + + V+ + G G+H S WD + DG
Sbjct: 34 YQHSKVNQWTTNVVEQTLSQLTKLGKP-FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGS 92
Query: 106 ASVSYTNTSLFAVATVHGL 124
+V + N +++ + + GL
Sbjct: 93 CTVRWENKTMYCIVSAFGL 111
>gi|239753813 PREDICTED: similar to dynein, light chain, Tctex-type
1 [Homo sapiens]
Length = 116
Score = 35.8 bits (81), Expect = 0.009
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 60 EQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVA 119
EQ +L +L P +K + + V+ + G G ++ S WD + DG +V + N +++ +
Sbjct: 51 EQTLSQLPKLGKP-FKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIV 109
Query: 120 TVHGL 124
GL
Sbjct: 110 GAFGL 114
>gi|239748376 PREDICTED: hypothetical protein XP_002346645 [Homo
sapiens]
Length = 116
Score = 35.8 bits (81), Expect = 0.009
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 60 EQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVA 119
EQ +L +L P +K + + V+ + G G ++ S WD + DG +V + N +++ +
Sbjct: 51 EQTLSQLPKLGKP-FKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIV 109
Query: 120 TVHGL 124
GL
Sbjct: 110 GAFGL 114
>gi|239742301 PREDICTED: hypothetical protein XP_002342481 [Homo
sapiens]
Length = 116
Score = 35.8 bits (81), Expect = 0.009
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 60 EQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVA 119
EQ +L +L P +K + + V+ + G G ++ S WD + DG +V + N +++ +
Sbjct: 51 EQTLSQLPKLGKP-FKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIV 109
Query: 120 TVHGL 124
GL
Sbjct: 110 GAFGL 114
>gi|5730087 dynein, light chain, Tctex-type 3 [Homo sapiens]
Length = 116
Score = 33.1 bits (74), Expect = 0.059
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 73 RYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGL 124
+Y + C+VV ++ G H S WD DG +V + N ++ + V +
Sbjct: 63 KYIVTCAVV--QKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAI 112
>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
isoform a [Homo sapiens]
Length = 1749
Score = 31.2 bits (69), Expect = 0.22
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 7 PPGRQEEENAKDSGRKPSPVRPRGCLPSID-XXXXXXXACYSSDEPARLVRE 57
P G +++++ +P P R CLP +D AC S E RL++E
Sbjct: 851 PAGERDDQSPDSVPERPRPADRRLCLPCVDASPLPGRTACPSLQEATRLIQE 902
>gi|169208948 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 437
Score = 28.5 bits (62), Expect = 1.5
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 33 PSIDXXXXXXXACYSSDEPARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHV 92
PS+ C D P R++ E+ L ++S + +L+CS VL GQG+ V
Sbjct: 55 PSLSRMGRRFRFCGDLDCPDRVLAEIST-----LAKMSSVKLQLLCSQVLKELLGQGIDV 109
Query: 93 VSRAL 97
+ L
Sbjct: 110 KDQKL 114
>gi|134254450 patched isoform S [Homo sapiens]
Length = 1296
Score = 27.7 bits (60), Expect = 2.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 3 SRPLPPGRQEEENAKDSGRK---PSPVRPR 29
S LPPGRQ ++ +D R+ P P RPR
Sbjct: 1139 SGSLPPGRQGQQPRRDPPREGLWPPPYRPR 1168
>gi|134254435 patched isoform S [Homo sapiens]
Length = 1296
Score = 27.7 bits (60), Expect = 2.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 3 SRPLPPGRQEEENAKDSGRK---PSPVRPR 29
S LPPGRQ ++ +D R+ P P RPR
Sbjct: 1139 SGSLPPGRQGQQPRRDPPREGLWPPPYRPR 1168
>gi|134254468 patched isoform S [Homo sapiens]
Length = 1296
Score = 27.7 bits (60), Expect = 2.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 3 SRPLPPGRQEEENAKDSGRK---PSPVRPR 29
S LPPGRQ ++ +D R+ P P RPR
Sbjct: 1139 SGSLPPGRQGQQPRRDPPREGLWPPPYRPR 1168
>gi|134254452 patched isoform S [Homo sapiens]
Length = 1296
Score = 27.7 bits (60), Expect = 2.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 3 SRPLPPGRQEEENAKDSGRK---PSPVRPR 29
S LPPGRQ ++ +D R+ P P RPR
Sbjct: 1139 SGSLPPGRQGQQPRRDPPREGLWPPPYRPR 1168
>gi|134254432 patched isoform L' [Homo sapiens]
Length = 1446
Score = 27.7 bits (60), Expect = 2.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 3 SRPLPPGRQEEENAKDSGRK---PSPVRPR 29
S LPPGRQ ++ +D R+ P P RPR
Sbjct: 1289 SGSLPPGRQGQQPRRDPPREGLWPPPYRPR 1318
>gi|134254466 patched isoform M [Homo sapiens]
Length = 1381
Score = 27.7 bits (60), Expect = 2.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 3 SRPLPPGRQEEENAKDSGRK---PSPVRPR 29
S LPPGRQ ++ +D R+ P P RPR
Sbjct: 1224 SGSLPPGRQGQQPRRDPPREGLWPPPYRPR 1253
>gi|134254446 patched isoform L [Homo sapiens]
Length = 1447
Score = 27.7 bits (60), Expect = 2.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 3 SRPLPPGRQEEENAKDSGRK---PSPVRPR 29
S LPPGRQ ++ +D R+ P P RPR
Sbjct: 1290 SGSLPPGRQGQQPRRDPPREGLWPPPYRPR 1319
>gi|71274152 hypothetical protein LOC388939 [Homo sapiens]
Length = 1288
Score = 27.7 bits (60), Expect = 2.5
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 10 RQEEENAKDSGRKPSPVRPRGCLPSIDXXXXXXXACYSSDEPARLVRELCEQVHVRLREL 69
RQ E + GRK SP R +P D + Y +P+ + V R L
Sbjct: 981 RQSRERSPPVGRKASPTRTH-WVPQADKRRRSLPSSYRPAQPSPSAVQTPPSPPVSPRVL 1039
Query: 70 SPPRYK 75
SPP K
Sbjct: 1040 SPPTTK 1045
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 27.3 bits (59), Expect = 3.2
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 4 RPLPPGR--QEEENAKDSGRKPSPVRP 28
+PLPPG E D G +P P+RP
Sbjct: 1726 QPLPPGPIGTERSQRTDRGTEPGPIRP 1752
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 27.3 bits (59), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 5 PLPP-GRQEEENAKDSGRKPSPVRPRGCLP 33
P+P G+ EEE +D R P P+ CLP
Sbjct: 16 PVPVVGKGEEEEEEDGMRLCLPANPKNCLP 45
>gi|169208214 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 422
Score = 26.6 bits (57), Expect = 5.5
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 33 PSIDXXXXXXXACYSSDEPARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQGV 90
PS+ C D P R++ E+ L ++S + +L+CS VL GQG+
Sbjct: 39 PSLSRVGRRFRFCGDLDCPDRVLAEIST-----LAKMSSVKLQLLCSQVLKELLGQGI 91
>gi|41350212 bromodomain containing 7 [Homo sapiens]
Length = 651
Score = 26.2 bits (56), Expect = 7.2
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 49 DEPARLVRELCEQVHVRLRELSPPRYKLVCSVVLGP 84
DE RL+REL E + RL PP ++C +LGP
Sbjct: 547 DETTRLLRELQEAQNERLSTRPPP--NMIC--LLGP 578
>gi|4758426 guanine deaminase [Homo sapiens]
Length = 454
Score = 26.2 bits (56), Expect = 7.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 47 SSDEPARLVRELCEQVHVRLRELSPPRYKLVCSVVL 82
S E R V E+ ++ + R++ + PR+ L CS L
Sbjct: 187 SIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETL 222
>gi|239754740 PREDICTED: similar to hCG2039506 [Homo sapiens]
Length = 170
Score = 25.8 bits (55), Expect = 9.4
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 71 PPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLA------SVSYTNTSLF 116
P R L+ ++LGP +G G V W + + G + S+ + T++F
Sbjct: 16 PSRKMLLLLLLLGPGSGLGAVVSQHPSWVICKSGTSVKIECRSLDFQATTMF 67
>gi|169162399 PREDICTED: hypothetical protein [Homo sapiens]
Length = 392
Score = 25.8 bits (55), Expect = 9.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 21 RKPSPVRPRGCLPSIDXXXXXXXACYSSDEPARLVRELCE 60
++PS PRG LP + A ++ EP + +R +C+
Sbjct: 207 QRPSARGPRGPLPGLAAWCYRPRARCAASEPQQTLRGVCD 246
>gi|169162742 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 25.8 bits (55), Expect = 9.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 21 RKPSPVRPRGCLPSIDXXXXXXXACYSSDEPARLVRELCE 60
++PS PRG LP + A ++ EP + +R +C+
Sbjct: 197 QRPSARGPRGPLPGLAAWCYRPRARCAASEPQQTLRGVCD 236
>gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens]
Length = 1256
Score = 25.8 bits (55), Expect = 9.4
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 3 SRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSIDXXXXXXXACYSSDEPARLVRELCEQV 62
+R L E+ A+DS P PV P P+ + + Y + P + ++
Sbjct: 25 NRDLLASHSAEDEAEDSAMSPIPVGPPSPFPTSEDFTPKEGSPY--EAPVYIPEDIPIPA 82
Query: 63 HVRLRELSPP 72
LRE S P
Sbjct: 83 DFELRESSIP 92
>gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens]
Length = 1275
Score = 25.8 bits (55), Expect = 9.4
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 3 SRPLPPGRQEEENAKDSGRKPSPVRPRGCLPSIDXXXXXXXACYSSDEPARLVRELCEQV 62
+R L E+ A+DS P PV P P+ + + Y + P + ++
Sbjct: 25 NRDLLASHSAEDEAEDSAMSPIPVGPPSPFPTSEDFTPKEGSPY--EAPVYIPEDIPIPA 82
Query: 63 HVRLRELSPP 72
LRE S P
Sbjct: 83 DFELRESSIP 92
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,599,732
Number of Sequences: 37866
Number of extensions: 248545
Number of successful extensions: 800
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 32
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.