Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 167857792
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|167857792 programmed cell death 1 precursor [Homo sapiens]
(288 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|167857792 programmed cell death 1 precursor [Homo sapiens] 602 e-172
gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens] 44 1e-04
gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens] 44 1e-04
gi|239753212 PREDICTED: similar to hCG1686089 [Homo sapiens] 44 2e-04
gi|239749464 PREDICTED: hypothetical protein XP_002347049 [Homo ... 44 2e-04
gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens] 43 3e-04
gi|169194776 PREDICTED: similar to hCG1742442 [Homo sapiens] 43 3e-04
gi|169190399 PREDICTED: similar to hCG1742442 [Homo sapiens] 43 3e-04
gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo ... 43 3e-04
gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo... 42 5e-04
gi|193083163 roundabout, axon guidance receptor, homolog 2 isofo... 41 0.001
gi|61888896 roundabout, axon guidance receptor, homolog 2 isofor... 41 0.001
gi|169217390 PREDICTED: similar to hCG1742442 [Homo sapiens] 40 0.002
gi|169217347 PREDICTED: similar to hCG1742442 [Homo sapiens] 40 0.002
gi|169167318 PREDICTED: similar to hCG2042707 [Homo sapiens] 40 0.002
gi|169163724 PREDICTED: similar to hCG26659 [Homo sapiens] 39 0.004
gi|239747852 PREDICTED: hypothetical protein XP_002346449 [Homo ... 39 0.004
gi|169163023 PREDICTED: similar to hCG26659 [Homo sapiens] 39 0.004
gi|4506309 protein tyrosine phosphatase, receptor type, D isofor... 38 0.012
gi|18860890 protein tyrosine phosphatase, receptor type, D isofo... 38 0.012
gi|18860892 protein tyrosine phosphatase, receptor type, D isofo... 38 0.012
gi|18860894 protein tyrosine phosphatase, receptor type, D isofo... 38 0.012
gi|239747814 PREDICTED: hypothetical protein XP_002348323 [Homo ... 38 0.012
gi|18079321 V-set and transmembrane domain containing 2 like [Ho... 38 0.012
gi|198386341 signal-regulatory protein beta 2 isoform 2 [Homo sa... 36 0.045
gi|171906611 signal-regulatory protein beta 2 isoform 1 [Homo sa... 36 0.045
gi|110349719 titin isoform N2-A [Homo sapiens] 35 0.076
gi|4505243 myelin protein zero [Homo sapiens] 33 0.22
gi|5901964 HERV-H LTR-associating 2 [Homo sapiens] 33 0.22
gi|104487002 protein tyrosine phosphatase, receptor type, D isof... 33 0.38
>gi|167857792 programmed cell death 1 precursor [Homo sapiens]
Length = 288
Score = 602 bits (1552), Expect = e-172
Identities = 288/288 (100%), Positives = 288/288 (100%)
Query: 1 MQIPQAPWPVVWAVLQLGWRPGWFLDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTS 60
MQIPQAPWPVVWAVLQLGWRPGWFLDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTS
Sbjct: 1 MQIPQAPWPVVWAVLQLGWRPGWFLDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTS 60
Query: 61 ESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGT 120
ESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGT
Sbjct: 61 ESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGT 120
Query: 121 YLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVVGGLLGS 180
YLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVVGGLLGS
Sbjct: 121 YLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVVGGLLGS 180
Query: 181 LVLLVWVLAVICSRAARGTIGARRTGQPLKEDPSAVPVFSVDYGELDFQWREKTPEPPVP 240
LVLLVWVLAVICSRAARGTIGARRTGQPLKEDPSAVPVFSVDYGELDFQWREKTPEPPVP
Sbjct: 181 LVLLVWVLAVICSRAARGTIGARRTGQPLKEDPSAVPVFSVDYGELDFQWREKTPEPPVP 240
Query: 241 CVPEQTEYATIVFPSGMGTSSPARRGSADGPRSAQPLRPEDGHCSWPL 288
CVPEQTEYATIVFPSGMGTSSPARRGSADGPRSAQPLRPEDGHCSWPL
Sbjct: 241 CVPEQTEYATIVFPSGMGTSSPARRGSADGPRSAQPLRPEDGHCSWPL 288
>gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens]
Length = 157
Score = 44.3 bits (103), Expect = 1e-04
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRF 95
T SPA L ++ G+ AT +C S + S L+WY+ P Q +L + G RF
Sbjct: 30 TQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKP-GQAPRLLIYGASTRATGIPARF 88
Query: 96 RVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELR 143
+ +G DF +++ + D Y C P I+ + R
Sbjct: 89 --SGSGSGTDFTLTISSLQPEDFAVYYCQQDYNLPPTVIQHETKTSTR 134
>gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens]
Length = 151
Score = 44.3 bits (103), Expect = 1e-04
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRF 95
T SPA L ++ G+ AT +C S + S L+WY+ P Q +L + G RF
Sbjct: 25 TQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKP-GQAPRLLIYGASTRATGIPARF 83
Query: 96 RVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELR 143
+ +G DF +++ + D Y C P I+ + R
Sbjct: 84 --SGSGSGTDFTLTISSLQPEDFAVYYCQQDYNLPPTVIQHETKTSTR 129
>gi|239753212 PREDICTED: similar to hCG1686089 [Homo sapiens]
Length = 152
Score = 43.5 bits (101), Expect = 2e-04
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRF 95
T SPA L ++ G+ AT +C S + S L WY+ P +L + G RF
Sbjct: 25 TQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKP-GLAPRLLIYDASSRATGIPDRF 83
Query: 96 RVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELR 143
+ +G DF +++ R D Y C +P I+ + R
Sbjct: 84 --SGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPPTVIQLETKTSAR 129
>gi|239749464 PREDICTED: hypothetical protein XP_002347049 [Homo
sapiens]
Length = 152
Score = 43.5 bits (101), Expect = 2e-04
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRF 95
T SPA L ++ G+ AT +C S + S L WY+ P +L + G RF
Sbjct: 25 TQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKP-GLAPRLLIYDASSRATGIPDRF 83
Query: 96 RVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELR 143
+ +G DF +++ R D Y C +P I+ + R
Sbjct: 84 --SGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPPTVIQLETKTSAR 129
>gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 296
Score = 43.1 bits (100), Expect = 3e-04
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRF 95
T SP+ L + GD T TC S S LNWY+ P +T KL + Q G RF
Sbjct: 198 TQSPSSLSASVGDRVTITCRASQ-GISNNLNWYQQKP-GKTPKLLIYAASSLQSGIPSRF 255
Query: 96 RVTQLPNGRDFHMSVVRARRNDSGTYLC 123
+ +G D+ +++ + D TY C
Sbjct: 256 --SDSGSGTDYTLTISSLQPEDFATYYC 281
>gi|169194776 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 242
Score = 43.1 bits (100), Expect = 3e-04
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRF 95
T SP+ L + GD T TC S S LNWY+ P +T KL + Q G RF
Sbjct: 144 TQSPSSLSASVGDRVTITCRASQ-GISNNLNWYQQKP-GKTPKLLIYAASSLQSGIPSRF 201
Query: 96 RVTQLPNGRDFHMSVVRARRNDSGTYLC 123
+ +G D+ +++ + D TY C
Sbjct: 202 --SDSGSGTDYTLTISSLQPEDFATYYC 227
>gi|169190399 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 242
Score = 43.1 bits (100), Expect = 3e-04
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRF 95
T SP+ L + GD T TC S S LNWY+ P +T KL + Q G RF
Sbjct: 144 TQSPSSLSASVGDRVTITCRASQ-GISNNLNWYQQKP-GKTPKLLIYAASSLQSGIPSRF 201
Query: 96 RVTQLPNGRDFHMSVVRARRNDSGTYLC 123
+ +G D+ +++ + D TY C
Sbjct: 202 --SDSGSGTDYTLTISSLQPEDFATYYC 227
>gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo
sapiens]
Length = 636
Score = 43.1 bits (100), Expect = 3e-04
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRF 95
T SP+ L + GD T TC S S LNWY+ P +T KL + Q G RF
Sbjct: 538 TQSPSSLSASVGDRVTITCRASQ-GISNNLNWYQQKP-GKTPKLLIYAASSLQSGIPSRF 595
Query: 96 RVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIK 135
+ +G D+ +++ + D TY C P ++
Sbjct: 596 --SDSGSGADYTLTIRSLQPEDFATYYCQQSDSTPPTALQ 633
>gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo
sapiens]
Length = 123
Score = 42.4 bits (98), Expect = 5e-04
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRF 95
T SP+ L + GD T TC S S+ L WY+ P + KL + Q G RF
Sbjct: 27 TQSPSFLSASVGDRVTITCRASQGISSY-LAWYQQKP-GKAPKLLIYAASTLQSGVPSRF 84
Query: 96 RVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAP 130
+ +G +F +++ + D TY C ++ P
Sbjct: 85 --SGSGSGTEFTLTISSLQPEDFATYYCQQLNSYP 117
>gi|193083163 roundabout, axon guidance receptor, homolog 2 isoform
ROBO2a [Homo sapiens]
Length = 1394
Score = 40.8 bits (94), Expect = 0.001
Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 23/140 (16%)
Query: 34 PPTF--SPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQ 91
PP F P +V +G TF C + V W + N FP QP
Sbjct: 329 PPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVF-WQKEGSQN-----LLFPNQPQQPNS 382
Query: 92 DCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTERRAEV 151
C P G +++ +R+D+G Y+C A+++A K A+L VT +V
Sbjct: 383 RCSVS----PTG---DLTITNIQRSDAGYYICQALTVAGSILAK----AQLEVT----DV 427
Query: 152 PTAHPSPSPRPAGQFQTLVV 171
T P P QTL V
Sbjct: 428 LTDRPPPIILQGPANQTLAV 447
>gi|61888896 roundabout, axon guidance receptor, homolog 2 isoform
ROBO2b [Homo sapiens]
Length = 1378
Score = 40.8 bits (94), Expect = 0.001
Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 23/140 (16%)
Query: 34 PPTF--SPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQ 91
PP F P +V +G TF C + V W + N FP QP
Sbjct: 313 PPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVF-WQKEGSQN-----LLFPNQPQQPNS 366
Query: 92 DCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTERRAEV 151
C P G +++ +R+D+G Y+C A+++A K A+L VT +V
Sbjct: 367 RCSVS----PTG---DLTITNIQRSDAGYYICQALTVAGSILAK----AQLEVT----DV 411
Query: 152 PTAHPSPSPRPAGQFQTLVV 171
T P P QTL V
Sbjct: 412 LTDRPPPIILQGPANQTLAV 431
>gi|169217390 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 205
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFV--LNWYRMSPSNQTDKLAAFPEDRSQPGQDC 93
T SP+ L + GD T TC S+ + LNWY+ P +T KL + Q G
Sbjct: 107 TQSPSSLSASVGDRVTITC---RASQGIINNLNWYQKKP-GKTPKLLIYAASSLQSGIPT 162
Query: 94 RFRVTQLPNGRDFHMSVVRARRNDSGTYLC 123
RF + +G D+ ++ + D TY C
Sbjct: 163 RF--SDSGSGTDYTPTISSLQPEDFATYYC 190
>gi|169217347 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 205
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFV--LNWYRMSPSNQTDKLAAFPEDRSQPGQDC 93
T SP+ L + GD T TC S+ + LNWY+ P +T KL + Q G
Sbjct: 107 TQSPSSLSASVGDRVTITC---RASQGIINNLNWYQKKP-GKTPKLLIYAASSLQSGIPT 162
Query: 94 RFRVTQLPNGRDFHMSVVRARRNDSGTYLC 123
RF + +G D+ ++ + D TY C
Sbjct: 163 RF--SDSGSGTDYTPTISSLQPEDFATYYC 190
>gi|169167318 PREDICTED: similar to hCG2042707 [Homo sapiens]
Length = 142
Score = 40.0 bits (92), Expect = 0.002
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 15 LQLGWRPGWFLDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSN 74
L L W PG D T SP+ L + GD T TC S S L WY+ P
Sbjct: 21 LLLLWLPGTRCDIQ------MTQSPSSLSASVGDRVTITCRASQ-GISNSLAWYQQKP-G 72
Query: 75 QTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGTYLC 123
+ KL + R + G RF + +G D+ +++ + D TY C
Sbjct: 73 KAPKLLLYAASRLESGVPSRF--SGSGSGTDYTLTISSLQPEDFATYYC 119
>gi|169163724 PREDICTED: similar to hCG26659 [Homo sapiens]
Length = 191
Score = 39.3 bits (90), Expect = 0.004
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRF 95
T SP+ L + GD T TC S S L+WY+ P Q L + Q G RF
Sbjct: 27 TQSPSSLSASVGDRVTITCRASQ-GISNGLSWYQQKP-GQAPTLLIYAASSLQSGVPSRF 84
Query: 96 RVTQLPNGRDFHMSVVRARRNDSGTYLC 123
+ +G DF +++ + D TY C
Sbjct: 85 --SGSGSGTDFTLTISSLQPEDVATYYC 110
>gi|239747852 PREDICTED: hypothetical protein XP_002346449 [Homo
sapiens]
Length = 155
Score = 39.3 bits (90), Expect = 0.004
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRF 95
T SP+ L + GD T TC S S L+WY+ P Q L + Q G RF
Sbjct: 27 TQSPSSLSASVGDRVTITCRASQ-GISNGLSWYQQKP-GQAPTLLIYAASSLQSGVPSRF 84
Query: 96 RVTQLPNGRDFHMSVVRARRNDSGTYLC 123
+ +G DF +++ + D TY C
Sbjct: 85 --SGSGSGTDFTLTISSLQPEDVATYYC 110
>gi|169163023 PREDICTED: similar to hCG26659 [Homo sapiens]
Length = 191
Score = 39.3 bits (90), Expect = 0.004
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRF 95
T SP+ L + GD T TC S S L+WY+ P Q L + Q G RF
Sbjct: 27 TQSPSSLSASVGDRVTITCRASQ-GISNGLSWYQQKP-GQAPTLLIYAASSLQSGVPSRF 84
Query: 96 RVTQLPNGRDFHMSVVRARRNDSGTYLC 123
+ +G DF +++ + D TY C
Sbjct: 85 --SGSGSGTDFTLTISSLQPEDVATYYC 110
>gi|4506309 protein tyrosine phosphatase, receptor type, D isoform 1
precursor [Homo sapiens]
Length = 1912
Score = 37.7 bits (86), Expect = 0.012
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 152 PTAHPSPSPRPAGQFQTLVVGVVGGLLGSLVLLVWVLAVICSRAARGTIGARRTGQPL-K 210
P P+P + ++ VVG +L + ++ V+A++ + R +R++ P K
Sbjct: 1249 PVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIICIVIAILLYKRKRAESDSRKSSIPNNK 1308
Query: 211 EDPSAVPVFSVDYGELDFQWREKTPEPPVP 240
E PS P V+ L+FQ PP+P
Sbjct: 1309 EIPSHHPTDPVELRRLNFQTPGMASHPPIP 1338
>gi|18860890 protein tyrosine phosphatase, receptor type, D isoform 2
precursor [Homo sapiens]
Length = 1899
Score = 37.7 bits (86), Expect = 0.012
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 152 PTAHPSPSPRPAGQFQTLVVGVVGGLLGSLVLLVWVLAVICSRAARGTIGARRTGQPL-K 210
P P+P + ++ VVG +L + ++ V+A++ + R +R++ P K
Sbjct: 1236 PVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIICIVIAILLYKRKRAESDSRKSSIPNNK 1295
Query: 211 EDPSAVPVFSVDYGELDFQWREKTPEPPVP 240
E PS P V+ L+FQ PP+P
Sbjct: 1296 EIPSHHPTDPVELRRLNFQTPGMASHPPIP 1325
>gi|18860892 protein tyrosine phosphatase, receptor type, D isoform 3
precursor [Homo sapiens]
Length = 1903
Score = 37.7 bits (86), Expect = 0.012
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 152 PTAHPSPSPRPAGQFQTLVVGVVGGLLGSLVLLVWVLAVICSRAARGTIGARRTGQPL-K 210
P P+P + ++ VVG +L + ++ V+A++ + R +R++ P K
Sbjct: 1240 PVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIICIVIAILLYKRKRAESDSRKSSIPNNK 1299
Query: 211 EDPSAVPVFSVDYGELDFQWREKTPEPPVP 240
E PS P V+ L+FQ PP+P
Sbjct: 1300 EIPSHHPTDPVELRRLNFQTPGMASHPPIP 1329
>gi|18860894 protein tyrosine phosphatase, receptor type, D isoform
4 precursor [Homo sapiens]
Length = 1501
Score = 37.7 bits (86), Expect = 0.012
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 152 PTAHPSPSPRPAGQFQTLVVGVVGGLLGSLVLLVWVLAVICSRAARGTIGARRTGQPL-K 210
P P+P + ++ VVG +L + ++ V+A++ + R +R++ P K
Sbjct: 838 PVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIICIVIAILLYKRKRAESDSRKSSIPNNK 897
Query: 211 EDPSAVPVFSVDYGELDFQWREKTPEPPVP 240
E PS P V+ L+FQ PP+P
Sbjct: 898 EIPSHHPTDPVELRRLNFQTPGMASHPPIP 927
>gi|239747814 PREDICTED: hypothetical protein XP_002348323 [Homo
sapiens]
Length = 162
Score = 37.7 bits (86), Expect = 0.012
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNTSESFV--LNWYRMSPSNQTDKLAAFPEDRSQPGQDC 93
T P+ L + GD+ T TC S+SF L WY+ P + KL + Q G
Sbjct: 77 TQPPSSLSASVGDSVTITC---RASQSFTNQLAWYQQKP-GKAPKLLIYRVSSLQTGVPS 132
Query: 94 RFRVTQLPNGRDFHMSVVRARRNDSGTYLC 123
F ++ +G DF +++ + +D TY C
Sbjct: 133 LFSGSE--SGTDFTLTISSLQPDDVATYYC 160
>gi|18079321 V-set and transmembrane domain containing 2 like [Homo
sapiens]
Length = 204
Score = 37.7 bits (86), Expect = 0.012
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 17/147 (11%)
Query: 36 TFSPALLVVTEGDNATFTCSFSNT-SESFVLN---WYRMSPSNQTDKLA-AFPEDRSQPG 90
T +P + G++ CSF + S S+ L WY S + TDK A A + ++
Sbjct: 44 TETPHDMTARTGEDVEMACSFRGSGSPSYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQ 103
Query: 91 QDCRFRVTQLP------NGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRV 144
+D T++ + + + R + D GTY C I + ++A LRV
Sbjct: 104 EDAGKEATKISVVKVVGSNISHKLRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRV 163
Query: 145 TE------RRAEVPTAHPSPSPRPAGQ 165
E P A P+P P G+
Sbjct: 164 QPGENSVLHLPEAPPAAPAPPPPKPGK 190
>gi|198386341 signal-regulatory protein beta 2 isoform 2 [Homo
sapiens]
Length = 244
Score = 35.8 bits (81), Expect = 0.045
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 102 NGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKE----SLRAELRVTERRAEVPTAHPS 157
+ DF + + D+GTY C P Q SL+ + + T + T+ P+
Sbjct: 123 SNNDFSILLQNVSSEDAGTYYCVKFQRKPNRQYLSGQGTSLKVKAKSTSSKEAEFTSEPA 182
Query: 158 PSPRPAGQFQTLVVGVVGGLLGSLVLLVWVLAVICSRAARGTIGARRTG 206
P G V+G L ++ L +LA+ SR + G + TG
Sbjct: 183 TEMSPTGLLVVFAPVVLG--LKAITLAALLLALATSRRSPGQEDVKTTG 229
>gi|171906611 signal-regulatory protein beta 2 isoform 1 [Homo
sapiens]
Length = 342
Score = 35.8 bits (81), Expect = 0.045
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 102 NGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKE----SLRAELRVTERRAEVPTAHPS 157
+ DF + + D+GTY C P Q SL+ + + T + T+ P+
Sbjct: 221 SNNDFSILLQNVSSEDAGTYYCVKFQRKPNRQYLSGQGTSLKVKAKSTSSKEAEFTSEPA 280
Query: 158 PSPRPAGQFQTLVVGVVGGLLGSLVLLVWVLAVICSRAARGTIGARRTG 206
P G V+G L ++ L +LA+ SR + G + TG
Sbjct: 281 TEMSPTGLLVVFAPVVLG--LKAITLAALLLALATSRRSPGQEDVKTTG 327
Score = 28.9 bits (63), Expect = 5.5
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 42 LVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLP 101
++V EG+ C + ++ W ++S +Q ++ F S PG + T P
Sbjct: 48 MLVAEGETLLLRCMVVGSCTDGMIKWVKVSTQDQ-QEIYNFKRG-SFPGVMPMIQRTSEP 105
Query: 102 NGRDFHMSVVRARRNDSGTYLC 123
D+ + + R +GTY C
Sbjct: 106 LNCDYSIYIHNVTREHTGTYHC 127
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 35.0 bits (79), Expect = 0.076
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 24/117 (20%)
Query: 33 NPPTFSPALLVVTE--GDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPG 90
NPP F L V G++A F C + T + ++W + D +
Sbjct: 8151 NPPFFDIRLAPVDAVVGESADFECHVTGT-QPIKVSWAK---------------DSREIR 8194
Query: 91 QDCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTER 147
+++++ L N H++V++ + DSG Y C A++ K+S A+L + ER
Sbjct: 8195 SGGKYQISYLENSA--HLTVLKVDKGDSGQYTCYAVNEVG----KDSCTAQLNIKER 8245
Score = 32.0 bits (71), Expect = 0.65
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 21/114 (18%)
Query: 39 PALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVT 98
P L + EG+ A F CS S ESF + W R +D++ D +
Sbjct: 12558 PQNLEILEGEKAEFVCSIS--KESFPVQWKR--------------DDKTLESGD---KYD 12598
Query: 99 QLPNGRDFHMSVVRARRNDSGTY--LCGAISLAPKAQIKESLRAELRVTERRAE 150
+ +G+ + V A D GTY + GA A + E LR + + + R +
Sbjct: 12599 VIADGKKRVLVVKDATLQDMGTYVVMVGAARAAAHLTVIEKLRIVVPLKDTRVK 12652
Score = 29.3 bits (64), Expect = 4.2
Identities = 32/124 (25%), Positives = 46/124 (37%), Gaps = 19/124 (15%)
Query: 39 PALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVT 98
P + V EG++A F+C V W R T R +VT
Sbjct: 32567 PRSMTVYEGESARFSCDTDGEPVPTV-TWLRKGQVLST---------------SARHQVT 32610
Query: 99 QLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAE-LRVTERRAEVPTAHPS 157
F +S V+A +D G Y + K + + +L + RVTE+ P S
Sbjct: 32611 TTKYKSTFEISSVQA--SDEGNYSVVVENSEGKQEAEFTLTIQKARVTEKAVTSPPRVKS 32668
Query: 158 PSPR 161
P PR
Sbjct: 32669 PEPR 32672
Score = 28.1 bits (61), Expect = 9.3
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 24/126 (19%)
Query: 34 PPTFS--PALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQ 91
PP F P + + G++ TF C + T+ + W A +PG
Sbjct: 7211 PPFFDLKPVSVDLALGESGTFKCHVTGTAP-IKITW-------------AKDNREIRPGG 7256
Query: 92 DCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTERRAEV 151
+ +++T + N ++V++ + D+G Y C A ++A K+S A+L V E +
Sbjct: 7257 N--YKMTLVENTAT--LTVLKVGKGDAGQYTCYASNIAG----KDSCSAQLGVQEPPRFI 7308
Query: 152 PTAHPS 157
PS
Sbjct: 7309 KKLEPS 7314
>gi|4505243 myelin protein zero [Homo sapiens]
Length = 258
Score = 33.5 bits (75), Expect = 0.22
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 26/154 (16%)
Query: 47 GDNATFTCSFSNT---SESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDC------RFRV 97
G T CSF ++ S+ W R P D ++ F + QP D R +
Sbjct: 53 GSRVTLHCSFWSSEWVSDDISFTW-RYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQW 111
Query: 98 TQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPS 157
P +D + + +D+GT+ C + P + ++ + L V E+ VPT
Sbjct: 112 VGDPRWKDGSIVIHNLDYSDNGTFTCDVKN--PPDIVGKTSQVTLYVFEK---VPT---- 162
Query: 158 PSPRPAGQFQTLVVGVVGGLLGSLVLLVWVLAVI 191
++ ++ V+GG+LG ++LL+ + V+
Sbjct: 163 -------RYGVVLGAVIGGVLGVVLLLLLLFYVV 189
>gi|5901964 HERV-H LTR-associating 2 [Homo sapiens]
Length = 414
Score = 33.5 bits (75), Expect = 0.22
Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 46 EGDNATFTCS----FSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVT-QL 100
+ ++ + +C + + ++ F + W RM + ++ + RF +L
Sbjct: 235 QSEHVSLSCQPVNDYFSPNQDFKVTWSRMKSGTFSVLAYYLSSSQNTIINESRFSWNKEL 294
Query: 101 PNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSP 160
N DF M+++ +DSG YLC S + T H PS
Sbjct: 295 INQSDFSMNLMDLNLSDSGEYLCNISS----------------DEYTLLTIHTVHVEPSQ 338
Query: 161 RPAGQFQTLVVGVVGGLLGSLVLLVWVLAVICSRAARGTIGARRTGQP 208
A + L + V +L + LL+W +V C RA + ARR+ P
Sbjct: 339 ETASHNKGLWILVPSAILAAF-LLIW--SVKCCRA---QLEARRSRHP 380
>gi|104487002 protein tyrosine phosphatase, receptor type, D isoform
5 precursor [Homo sapiens]
Length = 1502
Score = 32.7 bits (73), Expect = 0.38
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 152 PTAHPSPSPRPAGQFQTLVVGVVGGLLGSLVLLVWVLAVICSRAA----RGTIGARRTGQ 207
P P+P + ++ VVG +L + ++ V+A++ ++ R +R++
Sbjct: 835 PVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIICIVIAILLYKSKPDRKRAESDSRKSSI 894
Query: 208 PL-KEDPSAVPVFSVDYGELDFQWREKTPEPPVP 240
P KE PS P V+ L+FQ PP+P
Sbjct: 895 PNNKEIPSHHPTDPVELRRLNFQTPGMASHPPIP 928
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,617,714
Number of Sequences: 37866
Number of extensions: 710950
Number of successful extensions: 3393
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 3195
Number of HSP's gapped (non-prelim): 289
length of query: 288
length of database: 18,247,518
effective HSP length: 101
effective length of query: 187
effective length of database: 14,423,052
effective search space: 2697110724
effective search space used: 2697110724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.