BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|110624768 hypothetical protein LOC283777 [Homo sapiens] (192 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|110624768 hypothetical protein LOC283777 [Homo sapiens] 403 e-113 gi|153792633 hypothetical protein LOC26049 [Homo sapiens] 102 2e-22 gi|215490134 hypothetical protein LOC286223 isoform 2 [Homo sapi... 35 0.051 gi|50080156 hypothetical protein LOC286223 isoform 1 [Homo sapiens] 34 0.087 gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 32 0.33 gi|102467235 inner centromere protein antigens 135/155kDa isofor... 30 0.97 gi|102467242 inner centromere protein antigens 135/155kDa isofor... 30 0.97 gi|56788364 tubulin, gamma complex associated protein 6 [Homo sa... 30 1.3 gi|29789008 Huntingtin interacting protein C isoform 2 [Homo sap... 30 1.3 gi|72534686 Huntingtin interacting protein C isoform 1 [Homo sap... 30 1.3 gi|46409304 glutamate-rich 1 [Homo sapiens] 30 1.6 gi|197276594 RNA binding motif protein 20 [Homo sapiens] 29 2.8 gi|7019371 TCF3 (E2A) fusion partner [Homo sapiens] 29 2.8 gi|55770902 opioid growth factor receptor-like 1 [Homo sapiens] 29 2.8 gi|33598960 alpha-2B-adrenergic receptor [Homo sapiens] 28 3.7 gi|40255149 Rho guanine nucleotide exchange factor (GEF) 19 [Hom... 28 3.7 gi|170763508 general transcription factor IIIC, polypeptide 5 is... 28 3.7 gi|170763506 general transcription factor IIIC, polypeptide 5 is... 28 3.7 gi|126091152 cubilin [Homo sapiens] 28 4.8 gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 28 4.8 gi|197100900 iroquois homeobox 2 [Homo sapiens] 28 4.8 gi|39930475 iroquois homeobox 2 [Homo sapiens] 28 4.8 gi|239751227 PREDICTED: hypothetical protein XP_002347761 [Homo ... 28 6.3 gi|48255913 tripartite motif-containing 16 [Homo sapiens] 28 6.3 gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens] 28 6.3 gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens] 28 6.3 gi|54292117 ADAM metallopeptidase domain 28 isoform 3 preproprot... 27 8.2 gi|98985828 ADAM metallopeptidase domain 28 isoform 1 preproprot... 27 8.2 gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens] 27 8.2 >gi|110624768 hypothetical protein LOC283777 [Homo sapiens] Length = 192 Score = 403 bits (1035), Expect = e-113 Identities = 192/192 (100%), Positives = 192/192 (100%) Query: 1 MKVQSFGERVVLFILNAIIFGRLERNLDDDDMFFLPHSVKEQAKILWRRGAAVGFYTTKM 60 MKVQSFGERVVLFILNAIIFGRLERNLDDDDMFFLPHSVKEQAKILWRRGAAVGFYTTKM Sbjct: 1 MKVQSFGERVVLFILNAIIFGRLERNLDDDDMFFLPHSVKEQAKILWRRGAAVGFYTTKM 60 Query: 61 KGRLCGDGTGACYLLPVFDTVFIRRKHWHRGLGTAMLRDFCETFPEDEALGVSCSMSPAM 120 KGRLCGDGTGACYLLPVFDTVFIRRKHWHRGLGTAMLRDFCETFPEDEALGVSCSMSPAM Sbjct: 61 KGRLCGDGTGACYLLPVFDTVFIRRKHWHRGLGTAMLRDFCETFPEDEALGVSCSMSPAM 120 Query: 121 YQAHPGNSEDVSRHARTSQNDRPRQPAPGDGSKERMCGEELEDTKDDPECGVEEEDAGLA 180 YQAHPGNSEDVSRHARTSQNDRPRQPAPGDGSKERMCGEELEDTKDDPECGVEEEDAGLA Sbjct: 121 YQAHPGNSEDVSRHARTSQNDRPRQPAPGDGSKERMCGEELEDTKDDPECGVEEEDAGLA 180 Query: 181 GQPPGKLTRSSP 192 GQPPGKLTRSSP Sbjct: 181 GQPPGKLTRSSP 192 >gi|153792633 hypothetical protein LOC26049 [Homo sapiens] Length = 670 Score = 102 bits (255), Expect = 2e-22 Identities = 56/135 (41%), Positives = 84/135 (62%), Gaps = 10/135 (7%) Query: 2 KVQSFGERVVLFILNAIIFGRLERNLDDDDMFFLPHSVKEQAKILWRRGAAVGFYTTKMK 61 +V + GERVVL++LN II+ + E ++ +++ FL HS + AKILW++G A+GFY+ K Sbjct: 106 QVSTLGERVVLYVLNRIIYRKQE--MERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPT 163 Query: 62 GRLCGDGTGACYLLPVFDTVFIRRKHWHRGLGTAMLRDFCETFPEDEALGVSCSMSPAMY 121 G +C Y LPV DT+F+R+K+ + G ML DF ++F ED ALG+ +S MY Sbjct: 164 GSICASFLTQSYQLPVLDTMFLRKKYRGKDFGLHMLEDFVDSFTED-ALGLRYPLSSLMY 222 Query: 122 QA-------HPGNSE 129 A +PG+ E Sbjct: 223 TACKQYFEKYPGDHE 237 >gi|215490134 hypothetical protein LOC286223 isoform 2 [Homo sapiens] Length = 183 Score = 34.7 bits (78), Expect = 0.051 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 139 QNDRPRQPAPGDGSKERMCGEELED-TKDDPECGVEEEDAGLAGQP 183 ++ RPR+P PG G+++ L+D T+ DP G + A AG P Sbjct: 61 EDKRPRKPVPGTGNRDSGTRRRLQDATEQDPRPGNDVASAETAGPP 106 >gi|50080156 hypothetical protein LOC286223 isoform 1 [Homo sapiens] Length = 202 Score = 33.9 bits (76), Expect = 0.087 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 142 RPRQPAPGDGSKERMCGEELED-TKDDPECGVEEEDAGLAGQP 183 RPR+P PG G+++ L+D T+ DP G + A AG P Sbjct: 83 RPRKPVPGTGNRDSGTRRRLQDATEQDPRPGNDVASAETAGPP 125 >gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] Length = 480 Score = 32.0 bits (71), Expect = 0.33 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 5/81 (6%) Query: 117 SPAMYQAHPGNSEDVSRHARTSQNDRPRQPAPGDG-----SKERMCGEELEDTKDDPECG 171 +P PG +E SR R PAPG G S+ R G + Sbjct: 215 APPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAA 274 Query: 172 VEEEDAGLAGQPPGKLTRSSP 192 G G+ PG L R++P Sbjct: 275 APRAPGGGGGRNPGALGRAAP 295 >gi|102467235 inner centromere protein antigens 135/155kDa isoform 1 [Homo sapiens] Length = 918 Score = 30.4 bits (67), Expect = 0.97 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 7/90 (7%) Query: 103 TFPEDEALGVSCSMSPAMYQAHPGNSEDVSRHARTSQNDRPRQPAPGDGSKERMCGEELE 162 ++P ++ + + +P + P + A+T Q D PR+P P ++R + + Sbjct: 400 SWPHNDTEIANSTPNPKPAASSPETPSAGQQEAKTDQADGPREP-PQSARRKRSYKQAVS 458 Query: 163 DTKDDPECGVEEEDAGLAGQPPGKLTRSSP 192 + D E +E+E+ QPP T SSP Sbjct: 459 EL--DEEQHLEDEEL----QPPRSKTPSSP 482 >gi|102467242 inner centromere protein antigens 135/155kDa isoform 2 [Homo sapiens] Length = 914 Score = 30.4 bits (67), Expect = 0.97 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 7/90 (7%) Query: 103 TFPEDEALGVSCSMSPAMYQAHPGNSEDVSRHARTSQNDRPRQPAPGDGSKERMCGEELE 162 ++P ++ + + +P + P + A+T Q D PR+P P ++R + + Sbjct: 400 SWPHNDTEIANSTPNPKPAASSPETPSAGQQEAKTDQADGPREP-PQSARRKRSYKQAVS 458 Query: 163 DTKDDPECGVEEEDAGLAGQPPGKLTRSSP 192 + D E +E+E+ QPP T SSP Sbjct: 459 EL--DEEQHLEDEEL----QPPRSKTPSSP 482 >gi|56788364 tubulin, gamma complex associated protein 6 [Homo sapiens] Length = 1819 Score = 30.0 bits (66), Expect = 1.3 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 115 SMSPAMYQAHPGNSEDVSRH-ARTSQNDRPRQPAPGDGSKERMCGEELEDTKDDPECGVE 173 S+S + G++ED+S + SQ D Q +PG G EE E + + + G + Sbjct: 1364 SVSEELGPGRSGDTEDLSPNWPLNSQEDTAAQSSPGRG-------EEAEASAAEAQGGEQ 1416 Query: 174 EEDAGLAGQ 182 AGLAGQ Sbjct: 1417 AYLAGLAGQ 1425 >gi|29789008 Huntingtin interacting protein C isoform 2 [Homo sapiens] Length = 858 Score = 30.0 bits (66), Expect = 1.3 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%) Query: 4 QSFGERVVLFILNAIIFGRLERNLDDDDMFFLPHSVKEQAKILWRR 49 Q+FGE V A++ R + + DD +FFL KEQAK L RR Sbjct: 365 QTFGELEVW----AVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRR 406 >gi|72534686 Huntingtin interacting protein C isoform 1 [Homo sapiens] Length = 871 Score = 30.0 bits (66), Expect = 1.3 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%) Query: 4 QSFGERVVLFILNAIIFGRLERNLDDDDMFFLPHSVKEQAKILWRR 49 Q+FGE V A++ R + + DD +FFL KEQAK L RR Sbjct: 371 QTFGELEVW----AVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRR 412 >gi|46409304 glutamate-rich 1 [Homo sapiens] Length = 443 Score = 29.6 bits (65), Expect = 1.6 Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 11/102 (10%) Query: 91 GLGTAMLRDFCETFPEDEALGVSCSMSPAMYQAHPGNSEDVSRHARTSQNDRPRQPAPGD 150 G+G A D +T ED L A + E+ A R RQ D Sbjct: 201 GVGEACEEDGVDTSEEDPTL--------AGEEDVKDTREEDGADASEEDLTRARQEEGAD 252 Query: 151 GSKERMCGEELEDTKDD-PECGVE--EEDAGLAGQPPGKLTR 189 S+E ED KD E GV+ EED AG+ GK TR Sbjct: 253 ASEEDPTPAGEEDVKDAREEDGVDTIEEDLTRAGEEDGKDTR 294 >gi|197276594 RNA binding motif protein 20 [Homo sapiens] Length = 1227 Score = 28.9 bits (63), Expect = 2.8 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 7/51 (13%) Query: 113 SCSMS---PAMYQAHPGNSEDVSRHARTSQNDRPRQPAP----GDGSKERM 156 SCS S P +A GN D H+ ++ + R PAP GD ++RM Sbjct: 654 SCSSSHSPPGPSRADWGNGRDSWEHSPYARREEERDPAPWRDNGDDKRDRM 704 >gi|7019371 TCF3 (E2A) fusion partner [Homo sapiens] Length = 253 Score = 28.9 bits (63), Expect = 2.8 Identities = 16/50 (32%), Positives = 22/50 (44%) Query: 106 EDEALGVSCSMSPAMYQAHPGNSEDVSRHARTSQNDRPRQPAPGDGSKER 155 EDE + + +P + P E +S RT P PAPG+G R Sbjct: 141 EDEGSQGTDAPTPGNAENEPPEKETLSPPRRTPAPPEPGSPAPGEGPSGR 190 >gi|55770902 opioid growth factor receptor-like 1 [Homo sapiens] Length = 451 Score = 28.9 bits (63), Expect = 2.8 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 10/69 (14%) Query: 125 PGNSEDVSRHARTSQNDRPRQPAPGDGSKERMCGEELEDTKDDPE--------CGVEEED 176 P ED +T P +P PG GS+ G+E E PE +ED Sbjct: 13 PTTVEDCDSTWQTDSEPEPEEPGPGGGSEGP--GQESEQPAQPPEQAGGRPGASPAPDED 70 Query: 177 AGLAGQPPG 185 A AG G Sbjct: 71 AEAAGAEQG 79 >gi|33598960 alpha-2B-adrenergic receptor [Homo sapiens] Length = 450 Score = 28.5 bits (62), Expect = 3.7 Identities = 13/31 (41%), Positives = 17/31 (54%) Query: 146 PAPGDGSKERMCGEELEDTKDDPECGVEEED 176 P G G KE +CG ED ++ E EEE+ Sbjct: 278 PNSGQGQKEGVCGASPEDEAEEEEEEEEEEE 308 >gi|40255149 Rho guanine nucleotide exchange factor (GEF) 19 [Homo sapiens] Length = 802 Score = 28.5 bits (62), Expect = 3.7 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 123 AHPGNSEDVSRHARTSQNDRPRQPAPGDGSKERMCGEELEDTKDDPECG 171 A G + + + DR +PAPGD S+E E DT+++P G Sbjct: 229 AREGKASGMEARSVEMSGDRVSRPAPGD-SREGDWSEPRLDTQEEPPLG 276 >gi|170763508 general transcription factor IIIC, polypeptide 5 isoform 1 [Homo sapiens] Length = 526 Score = 28.5 bits (62), Expect = 3.7 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Query: 136 RTSQNDRPR---QPAPGDGSKERMCGEELEDTKDDPECGVEEED 176 +T ++ RP A DG KE++ E ED +D+ E EEED Sbjct: 464 QTIRSKRPALFSSSAKADGGKEQLTYESGEDEEDEEEEEEEEED 507 >gi|170763506 general transcription factor IIIC, polypeptide 5 isoform 2 [Homo sapiens] Length = 519 Score = 28.5 bits (62), Expect = 3.7 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Query: 136 RTSQNDRPR---QPAPGDGSKERMCGEELEDTKDDPECGVEEED 176 +T ++ RP A DG KE++ E ED +D+ E EEED Sbjct: 457 QTIRSKRPALFSSSAKADGGKEQLTYESGEDEEDEEEEEEEEED 500 >gi|126091152 cubilin [Homo sapiens] Length = 3623 Score = 28.1 bits (61), Expect = 4.8 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 54 GFYTTKMKGRLCGDGTGACYLLPVFDTVFIRRKHWHRGLGTAMLRDFCETFPEDEALGVS 113 G T + GR CG+ Y V T+++R G GT F + F D +G Sbjct: 1801 GNATGHLVGRYCGNSFPLNYSSIVGHTLWVRFISDGSGSGTGFQATFMKIFGNDNIVGTH 1860 Query: 114 CSM-SPAMYQAHPGNS 128 + SP + +P NS Sbjct: 1861 GKVASPFWPENYPHNS 1876 >gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein [Homo sapiens] Length = 593 Score = 28.1 bits (61), Expect = 4.8 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 6/80 (7%) Query: 106 EDEALGVSCSMSPAMYQAHPGNSEDVSRHARTSQNDRPRQPAPGDGSKERMCGEELEDTK 165 E++A SP + PG H +D +P + E GE+ E+ + Sbjct: 90 EEDAAREGTPGSPGRGREGPGEE-----HFEDMASDEDMKPKWEEEEMEEDLGEDEEEEE 144 Query: 166 DDPECGVEEEDAGLAGQPPG 185 +D E EEED G PPG Sbjct: 145 EDYEDEEEEEDEEGLG-PPG 163 >gi|197100900 iroquois homeobox 2 [Homo sapiens] Length = 471 Score = 28.1 bits (61), Expect = 4.8 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 129 EDVSRHARTSQNDRPRQPA-PGDGSKERMCGEELEDTKDDPECGVEEEDAGLAGQPPGKL 187 + ++ H+ ++++D + P GD E G E +D DD E ++++ G G P K Sbjct: 225 DSLTDHSCSAESDGEKLPCRAGDPLCES--GSECKDKYDDLEDDEDDDEEGERGLAPPKP 282 Query: 188 TRSSP 192 SSP Sbjct: 283 VTSSP 287 >gi|39930475 iroquois homeobox 2 [Homo sapiens] Length = 471 Score = 28.1 bits (61), Expect = 4.8 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 129 EDVSRHARTSQNDRPRQPA-PGDGSKERMCGEELEDTKDDPECGVEEEDAGLAGQPPGKL 187 + ++ H+ ++++D + P GD E G E +D DD E ++++ G G P K Sbjct: 225 DSLTDHSCSAESDGEKLPCRAGDPLCES--GSECKDKYDDLEDDEDDDEEGERGLAPPKP 282 Query: 188 TRSSP 192 SSP Sbjct: 283 VTSSP 287 >gi|239751227 PREDICTED: hypothetical protein XP_002347761 [Homo sapiens] Length = 282 Score = 27.7 bits (60), Expect = 6.3 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Query: 113 SCSMSPAMYQAHP------GNSEDVSRHARTSQNDRPRQPAPGDGSKERMCGEELEDTK 165 S S SP A P G+SE + R +D Q P KE +C L+DT+ Sbjct: 27 SGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDSDSAEQGDPAGEGKEVLCDFCLDDTR 85 >gi|48255913 tripartite motif-containing 16 [Homo sapiens] Length = 564 Score = 27.7 bits (60), Expect = 6.3 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Query: 113 SCSMSPAMYQAHP------GNSEDVSRHARTSQNDRPRQPAPGDGSKERMCGEELEDTK 165 S S SP A P G+SE + R +D Q P KE +C L+DT+ Sbjct: 27 SGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDSDSAEQGDPAGEGKEVLCDFCLDDTR 85 >gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens] Length = 1113 Score = 27.7 bits (60), Expect = 6.3 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Query: 107 DEALGVSCSMSPAMYQAHPGNSEDVSRHARTSQNDRPRQPAPGDGSKERM 156 ++ +GV+ S+S A PG E V R + R ++ AP G K R+ Sbjct: 827 EKPVGVAASLSDIPKAAEPGKLEQV----RPQELSRVQELAPASGEKARL 872 >gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens] Length = 1217 Score = 27.7 bits (60), Expect = 6.3 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Query: 107 DEALGVSCSMSPAMYQAHPGNSEDVSRHARTSQNDRPRQPAPGDGSKERM 156 ++ +GV+ S+S A PG E V R + R ++ AP G K R+ Sbjct: 931 EKPVGVAASLSDIPKAAEPGKLEQV----RPQELSRVQELAPASGEKARL 976 >gi|54292117 ADAM metallopeptidase domain 28 isoform 3 preproprotein [Homo sapiens] Length = 540 Score = 27.3 bits (59), Expect = 8.2 Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 146 PAPGDGSKERMCGEELEDTKDDPECGVEEE 175 P P D +CG +L + +D +CG EE Sbjct: 399 PLPTDIISTPICGNQLVEMGEDCDCGTSEE 428 >gi|98985828 ADAM metallopeptidase domain 28 isoform 1 preproprotein [Homo sapiens] Length = 775 Score = 27.3 bits (59), Expect = 8.2 Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 146 PAPGDGSKERMCGEELEDTKDDPECGVEEE 175 P P D +CG +L + +D +CG EE Sbjct: 399 PLPTDIISTPICGNQLVEMGEDCDCGTSEE 428 >gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens] Length = 5183 Score = 27.3 bits (59), Expect = 8.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 111 GVSCSMSPAMYQAHPGNSEDVSRHARTS 138 G+S +M + +Q+ P SE + RHA TS Sbjct: 1735 GMSSTMKESAFQSEPRISESLVRHASTS 1762 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.320 0.138 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,943,310 Number of Sequences: 37866 Number of extensions: 463686 Number of successful extensions: 1366 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 1344 Number of HSP's gapped (non-prelim): 36 length of query: 192 length of database: 18,247,518 effective HSP length: 97 effective length of query: 95 effective length of database: 14,574,516 effective search space: 1384579020 effective search space used: 1384579020 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.