Guide to the Human Genome
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Name: LYPD4 Sequence: fasta or formatted (246aa) NCBI GI: 167466266
Description:

LY6/PLAUR domain containing 4

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         21           2
 C cysteine            5.7         14           1
 D aspartate           1.6          4           1
 E glutamate           4.1         10           2
 F phenylalanine       5.3         13           1
 G glycine             6.5         16           1
 H histidine           2.4          6           2
 I isoleucine          3.7          9           1
 K lysine              4.1         10           1
 L leucine            12.2         30           2
 M methionine          2.0          5           1
 N asparagine          4.1         10           2
 P proline             4.5         11           2
 Q glutamine           3.3          8           1
 R arginine            4.5         11           1
 S serine             10.6         26           5
 T threonine           6.5         16           2
 V valine              6.9         17           2
 W tryptophan          1.2          3           1
 Y tyrosine            2.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LY6/PLAUR domain containing 4 
CD177                 0.134   CD177 molecule 
TEX101                0.121   testis expressed 101 isoform 1 
TEX101                0.121   testis expressed 101 isoform 2 
LYPD5                 0.040   LY6/PLAUR domain containing 5 isoform A 
LOC390940             0.027   PREDICTED: similar to R28379_1 
LOC390940             0.027   PREDICTED: similar to R28379_1 
LOC390940             0.027   PREDICTED: similar to R28379_1 
LYPD5                 0.021   LY6/PLAUR domain containing 5 isoform B 
HERC1                 0.013   guanine nucleotide exchange factor p532 
NR1D1                 0.006   nuclear receptor subfamily 1, group D, member 1 [Hom...
ATAD5                 0.006   ATPase family, AAA domain containing 5 
LYPD3                 0.006   GPI-anchored metastasis-associated protein homolog [...
FAT2                  0.006   FAT tumor suppressor 2 precursor 
OR10G7                0.006   olfactory receptor, family 10, subfamily G, member 7...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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