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Search of human proteins with 166795285
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|166795285 coenzyme Q4 homolog [Homo sapiens]
(265 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|166795285 coenzyme Q4 homolog [Homo sapiens] 532 e-151
gi|157388908 hypothetical protein LOC54954 [Homo sapiens] 30 2.2
gi|117606355 furry homolog [Homo sapiens] 30 2.2
gi|27597090 suppressor of Ty 6 homolog [Homo sapiens] 29 3.7
gi|7662386 NLR family, pyrin domain containing 1 isoform 2 [Homo... 28 6.3
gi|14719835 NLR family, pyrin domain containing 1 isoform 4 [Hom... 28 6.3
gi|74271814 NLR family, pyrin domain containing 1 isoform 5 [Hom... 28 6.3
gi|14719833 NLR family, pyrin domain containing 1 isoform 3 [Hom... 28 6.3
gi|14719829 NLR family, pyrin domain containing 1 isoform 1 [Hom... 28 6.3
gi|150417978 platelet glycoprotein Ib alpha polypeptide precurso... 28 8.3
gi|239755656 PREDICTED: hypothetical protein [Homo sapiens] 28 8.3
gi|239750182 PREDICTED: hypothetical protein [Homo sapiens] 28 8.3
gi|239744491 PREDICTED: hypothetical protein XP_002343164 [Homo ... 28 8.3
gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate... 28 8.3
>gi|166795285 coenzyme Q4 homolog [Homo sapiens]
Length = 265
Score = 532 bits (1370), Expect = e-151
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MATLLRPVLRRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKALLAAGSAAMA 60
MATLLRPVLRRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKALLAAGSAAMA
Sbjct: 1 MATLLRPVLRRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKALLAAGSAAMA 60
Query: 61 LYNPYRHDMVAVLGETTGHRTLKVLRDQMRRDPEGAQILQERPRISTSTLDLGKLQSLPE 120
LYNPYRHDMVAVLGETTGHRTLKVLRDQMRRDPEGAQILQERPRISTSTLDLGKLQSLPE
Sbjct: 61 LYNPYRHDMVAVLGETTGHRTLKVLRDQMRRDPEGAQILQERPRISTSTLDLGKLQSLPE 120
Query: 121 GSLGREYLRFLDVNRVSPDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNILGEI 180
GSLGREYLRFLDVNRVSPDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNILGEI
Sbjct: 121 GSLGREYLRFLDVNRVSPDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNILGEI 180
Query: 181 VVKWFEAVQTGLPMCILGAFFGPIRLGAQSLQVLVSELIPWAVQNGRRAPCVLNLYYERR 240
VVKWFEAVQTGLPMCILGAFFGPIRLGAQSLQVLVSELIPWAVQNGRRAPCVLNLYYERR
Sbjct: 181 VVKWFEAVQTGLPMCILGAFFGPIRLGAQSLQVLVSELIPWAVQNGRRAPCVLNLYYERR 240
Query: 241 WEQSLRALREELGITAPPMHVQGLA 265
WEQSLRALREELGITAPPMHVQGLA
Sbjct: 241 WEQSLRALREELGITAPPMHVQGLA 265
>gi|157388908 hypothetical protein LOC54954 [Homo sapiens]
Length = 1096
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 23/76 (30%)
Query: 18 LQRPAAEMPLRARSDGAGPLYSHH-----------------------LPTSPLQKALLAA 54
LQ P L A S GAGP+ HH P P + L+ A
Sbjct: 63 LQPPLPPAALGAYSGGAGPIRHHHPAHHFHHHGQAQPGLHPPLPPPPPPQLPGARVLVDA 122
Query: 55 GSAAMALYNPYRHDMV 70
GSA LY Y+ D V
Sbjct: 123 GSALPRLYGGYQTDWV 138
>gi|117606355 furry homolog [Homo sapiens]
Length = 3013
Score = 30.0 bits (66), Expect = 2.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 160 REVHDMLHTLLGMPTNILGEIVVKWFEAVQT 190
REV+DM HTLL +L +++ +W +QT
Sbjct: 672 REVNDMHHTLLDSSLKLLLQLLTQWKLVIQT 702
>gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]
Length = 1726
Score = 29.3 bits (64), Expect = 3.7
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 60 ALYNPYRHDMVAV---LGETTGHRTLKVLRDQMRRDPEGAQIL---QERPRISTSTLDLG 113
A+ +PY ++ LG G LK+L+ R Q++ P++ +
Sbjct: 976 AIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFL 1035
Query: 114 KLQSLPEGSLGREYLRFLDVNRVSPDTRAPTRFVDDEELAY 154
K+ + G Y+ LD +RV P+T R + + L Y
Sbjct: 1036 KIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEY 1076
>gi|7662386 NLR family, pyrin domain containing 1 isoform 2 [Homo
sapiens]
Length = 1429
Score = 28.5 bits (62), Expect = 6.3
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 32 DGAGPLYSHHLPTSPLQKALLAAGS-AAMALYNPYRHDMVAVLGETTGHRTLKVLRDQMR 90
+GAG +S P SP + L + + A+ P+ H++ A + + R L+ L D
Sbjct: 88 EGAG--HSPSFPYSPSEPHLGSPSQPTSTAVLMPWIHELPAGCTQGSERRVLRQLPDTSG 145
Query: 91 R----------------DPEGAQILQERPRISTSTLDLGKLQSLPEGSL 123
R P+ QE P TST LG S P+ SL
Sbjct: 146 RRWREISASLLYQALPSSPDHESPSQESPNAPTSTAVLGSWGSPPQPSL 194
>gi|14719835 NLR family, pyrin domain containing 1 isoform 4 [Homo
sapiens]
Length = 1399
Score = 28.5 bits (62), Expect = 6.3
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 32 DGAGPLYSHHLPTSPLQKALLAAGS-AAMALYNPYRHDMVAVLGETTGHRTLKVLRDQMR 90
+GAG +S P SP + L + + A+ P+ H++ A + + R L+ L D
Sbjct: 88 EGAG--HSPSFPYSPSEPHLGSPSQPTSTAVLMPWIHELPAGCTQGSERRVLRQLPDTSG 145
Query: 91 R----------------DPEGAQILQERPRISTSTLDLGKLQSLPEGSL 123
R P+ QE P TST LG S P+ SL
Sbjct: 146 RRWREISASLLYQALPSSPDHESPSQESPNAPTSTAVLGSWGSPPQPSL 194
>gi|74271814 NLR family, pyrin domain containing 1 isoform 5 [Homo
sapiens]
Length = 1375
Score = 28.5 bits (62), Expect = 6.3
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 32 DGAGPLYSHHLPTSPLQKALLAAGS-AAMALYNPYRHDMVAVLGETTGHRTLKVLRDQMR 90
+GAG +S P SP + L + + A+ P+ H++ A + + R L+ L D
Sbjct: 88 EGAG--HSPSFPYSPSEPHLGSPSQPTSTAVLMPWIHELPAGCTQGSERRVLRQLPDTSG 145
Query: 91 R----------------DPEGAQILQERPRISTSTLDLGKLQSLPEGSL 123
R P+ QE P TST LG S P+ SL
Sbjct: 146 RRWREISASLLYQALPSSPDHESPSQESPNAPTSTAVLGSWGSPPQPSL 194
>gi|14719833 NLR family, pyrin domain containing 1 isoform 3 [Homo
sapiens]
Length = 1443
Score = 28.5 bits (62), Expect = 6.3
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 32 DGAGPLYSHHLPTSPLQKALLAAGS-AAMALYNPYRHDMVAVLGETTGHRTLKVLRDQMR 90
+GAG +S P SP + L + + A+ P+ H++ A + + R L+ L D
Sbjct: 88 EGAG--HSPSFPYSPSEPHLGSPSQPTSTAVLMPWIHELPAGCTQGSERRVLRQLPDTSG 145
Query: 91 R----------------DPEGAQILQERPRISTSTLDLGKLQSLPEGSL 123
R P+ QE P TST LG S P+ SL
Sbjct: 146 RRWREISASLLYQALPSSPDHESPSQESPNAPTSTAVLGSWGSPPQPSL 194
>gi|14719829 NLR family, pyrin domain containing 1 isoform 1 [Homo
sapiens]
Length = 1473
Score = 28.5 bits (62), Expect = 6.3
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 32 DGAGPLYSHHLPTSPLQKALLAAGS-AAMALYNPYRHDMVAVLGETTGHRTLKVLRDQMR 90
+GAG +S P SP + L + + A+ P+ H++ A + + R L+ L D
Sbjct: 88 EGAG--HSPSFPYSPSEPHLGSPSQPTSTAVLMPWIHELPAGCTQGSERRVLRQLPDTSG 145
Query: 91 R----------------DPEGAQILQERPRISTSTLDLGKLQSLPEGSL 123
R P+ QE P TST LG S P+ SL
Sbjct: 146 RRWREISASLLYQALPSSPDHESPSQESPNAPTSTAVLGSWGSPPQPSL 194
>gi|150417978 platelet glycoprotein Ib alpha polypeptide precursor
[Homo sapiens]
Length = 639
Score = 28.1 bits (61), Expect = 8.3
Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 34/169 (20%)
Query: 81 TLKVLRDQMRRDPEGAQILQERPRISTSTLDLGKLQSLPEGSLG------REYLRFLDVN 134
TL + +Q++ P Q L P ++ + +L SLP G+L YL+ ++
Sbjct: 97 TLDLSHNQLQSLPLLGQTL---PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 153
Query: 135 RVSPDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNILGEIVVKWFEAVQTGLPM 194
+ P PT ++ LA + L +P +L + +Q
Sbjct: 154 TLPPGLLTPTPKLEKLSLAN------------NNLTELPAGLLNGLENLDTLLLQENSLY 201
Query: 195 CILGAFFGPIRLGAQSLQVLVSELIPWAVQNGRRAPCVLNLYYERRWEQ 243
I FFG S L+P+A +G C + Y RRW Q
Sbjct: 202 TIPKGFFG-------------SHLLPFAFLHGNPWLCNCEILYFRRWLQ 237
>gi|239755656 PREDICTED: hypothetical protein [Homo sapiens]
Length = 522
Score = 28.1 bits (61), Expect = 8.3
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 10 RRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKALLAAGSAAMALYNPYRHDM 69
RR PG E P R R +G P ++ SP+ + A+G + LY+ +R M
Sbjct: 390 RRWVATPGSSLLRPEAPARPR-EGLRPASANAAVASPMLGSSPASGPPSARLYSAHRFRM 448
Query: 70 VA 71
V+
Sbjct: 449 VS 450
>gi|239750182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 522
Score = 28.1 bits (61), Expect = 8.3
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 10 RRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKALLAAGSAAMALYNPYRHDM 69
RR PG E P R R +G P ++ SP+ + A+G + LY+ +R M
Sbjct: 390 RRWVATPGSSLLRPEAPARPR-EGLRPASANAAVASPMLGSSPASGPPSARLYSAHRFRM 448
Query: 70 VA 71
V+
Sbjct: 449 VS 450
>gi|239744491 PREDICTED: hypothetical protein XP_002343164 [Homo
sapiens]
Length = 471
Score = 28.1 bits (61), Expect = 8.3
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 10 RRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKALLAAGSAAMALYNPYRHDM 69
RR PG E P R R +G P ++ SP+ + A+G + LY+ +R M
Sbjct: 339 RRWVATPGSSLLRPEAPARPR-EGLRPASANAAVASPMLGSSPASGPPSARLYSAHRFRM 397
Query: 70 VA 71
V+
Sbjct: 398 VS 399
>gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate 3B
[Homo sapiens]
Length = 1043
Score = 28.1 bits (61), Expect = 8.3
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 36 PLYSHHLPTSPLQKALLAAGSAAMALYNPYRHDMVAVLGETTGHRTLKVLRDQMRRDPEG 95
PL LPT+ L LLA G A HD+V ++ G
Sbjct: 263 PLPPKALPTAGLPPGLLALGEVARPPLEAAIHDIVQLVARALG----------------S 306
Query: 96 AQILQERPRISTSTLDLGKLQSLPEGSLGREYLRFL 131
A +Q + + + ++ G LQ S GR RFL
Sbjct: 307 AAQVQPKRALLPAPVNCGDLQPAGPESPGRFLARFL 342
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,327,604
Number of Sequences: 37866
Number of extensions: 457952
Number of successful extensions: 1089
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1086
Number of HSP's gapped (non-prelim): 14
length of query: 265
length of database: 18,247,518
effective HSP length: 100
effective length of query: 165
effective length of database: 14,460,918
effective search space: 2386051470
effective search space used: 2386051470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.