Search of human proteins with 161377455

Search of human proteins with 161377455

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|161377455 acid phosphatase 5, tartrate resistant precursor
[Homo sapiens]
         (325 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|161377455 acid phosphatase 5, tartrate resistant precursor [H...   667   0.0  
gi|161377453 acid phosphatase 5, tartrate resistant precursor [H...   667   0.0  
gi|161377451 acid phosphatase 5, tartrate resistant precursor [H...   667   0.0  
gi|4501873 acid phosphatase 5, tartrate resistant precursor [Hom...   667   0.0  
gi|52851437 transmembrane protein 62 [Homo sapiens]                    33   0.45 
gi|192807300 calcium channel, voltage-dependent, L type, alpha 1...    30   2.2  
gi|192807298 calcium channel, voltage-dependent, L type, alpha 1...    30   2.2  
gi|126012573 low density lipoprotein-related protein 2 [Homo sap...    30   2.9  
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo...    30   3.8  
gi|224994189 prominin 1 isoform 2 [Homo sapiens]                       28   8.5  
gi|224994199 prominin 1 isoform 4 [Homo sapiens]                       28   8.5  
gi|224994197 prominin 1 isoform 5 [Homo sapiens]                       28   8.5  
gi|224994195 prominin 1 isoform 6 [Homo sapiens]                       28   8.5  
gi|224994193 prominin 1 isoform 7 [Homo sapiens]                       28   8.5  
gi|224994191 prominin 1 isoform 2 [Homo sapiens]                       28   8.5  
gi|5174387 prominin 1 isoform 1 [Homo sapiens]                         28   8.5  

>gi|161377455 acid phosphatase 5, tartrate resistant precursor [Homo
           sapiens]
          Length = 325

 Score =  667 bits (1722), Expect = 0.0
 Identities = 325/325 (100%), Positives = 325/325 (100%)

Query: 1   MDMWTALLILQALLLPSLADGATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI 60
           MDMWTALLILQALLLPSLADGATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI
Sbjct: 1   MDMWTALLILQALLLPSLADGATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI 60

Query: 61  LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 120
           LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ
Sbjct: 61  LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 120

Query: 121 IAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKL 180
           IAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKL
Sbjct: 121 IAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKL 180

Query: 181 ARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGH 240
           ARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGH
Sbjct: 181 ARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGH 240

Query: 241 DHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSK 300
           DHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSK
Sbjct: 241 DHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSK 300

Query: 301 EMTVTYIEASGKSLFKTRLPRRARP 325
           EMTVTYIEASGKSLFKTRLPRRARP
Sbjct: 301 EMTVTYIEASGKSLFKTRLPRRARP 325


>gi|161377453 acid phosphatase 5, tartrate resistant precursor [Homo
           sapiens]
          Length = 325

 Score =  667 bits (1722), Expect = 0.0
 Identities = 325/325 (100%), Positives = 325/325 (100%)

Query: 1   MDMWTALLILQALLLPSLADGATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI 60
           MDMWTALLILQALLLPSLADGATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI
Sbjct: 1   MDMWTALLILQALLLPSLADGATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI 60

Query: 61  LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 120
           LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ
Sbjct: 61  LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 120

Query: 121 IAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKL 180
           IAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKL
Sbjct: 121 IAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKL 180

Query: 181 ARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGH 240
           ARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGH
Sbjct: 181 ARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGH 240

Query: 241 DHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSK 300
           DHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSK
Sbjct: 241 DHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSK 300

Query: 301 EMTVTYIEASGKSLFKTRLPRRARP 325
           EMTVTYIEASGKSLFKTRLPRRARP
Sbjct: 301 EMTVTYIEASGKSLFKTRLPRRARP 325


>gi|161377451 acid phosphatase 5, tartrate resistant precursor [Homo
           sapiens]
          Length = 325

 Score =  667 bits (1722), Expect = 0.0
 Identities = 325/325 (100%), Positives = 325/325 (100%)

Query: 1   MDMWTALLILQALLLPSLADGATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI 60
           MDMWTALLILQALLLPSLADGATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI
Sbjct: 1   MDMWTALLILQALLLPSLADGATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI 60

Query: 61  LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 120
           LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ
Sbjct: 61  LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 120

Query: 121 IAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKL 180
           IAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKL
Sbjct: 121 IAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKL 180

Query: 181 ARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGH 240
           ARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGH
Sbjct: 181 ARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGH 240

Query: 241 DHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSK 300
           DHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSK
Sbjct: 241 DHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSK 300

Query: 301 EMTVTYIEASGKSLFKTRLPRRARP 325
           EMTVTYIEASGKSLFKTRLPRRARP
Sbjct: 301 EMTVTYIEASGKSLFKTRLPRRARP 325


>gi|4501873 acid phosphatase 5, tartrate resistant precursor [Homo
           sapiens]
          Length = 325

 Score =  667 bits (1722), Expect = 0.0
 Identities = 325/325 (100%), Positives = 325/325 (100%)

Query: 1   MDMWTALLILQALLLPSLADGATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI 60
           MDMWTALLILQALLLPSLADGATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI
Sbjct: 1   MDMWTALLILQALLLPSLADGATPALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQI 60

Query: 61  LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 120
           LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ
Sbjct: 61  LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 120

Query: 121 IAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKL 180
           IAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKL
Sbjct: 121 IAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKL 180

Query: 181 ARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGH 240
           ARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGH
Sbjct: 181 ARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGH 240

Query: 241 DHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSK 300
           DHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSK
Sbjct: 241 DHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSK 300

Query: 301 EMTVTYIEASGKSLFKTRLPRRARP 325
           EMTVTYIEASGKSLFKTRLPRRARP
Sbjct: 301 EMTVTYIEASGKSLFKTRLPRRARP 325


>gi|52851437 transmembrane protein 62 [Homo sapiens]
          Length = 643

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 35/205 (17%)

Query: 52  KEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQ---ETFEDVFSD-RSLRKVPWYVL 107
           K  + T+ I+    +L+ GD       + +  ++ +   +T++ +    R + K  W  +
Sbjct: 80  KFCSETIDIIQPALVLATGDLTDAKTKEQLGSRQHEVEWQTYQGILKKTRVMEKTKWLDI 139

Query: 108 AGNHDHLGNVSAQIAYSKISKRWNF---PSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNS 164
            GNHD   N+ +  +     ++++       F+ +H   P  N S          +C   
Sbjct: 140 KGNHDAF-NIPSLDSIKNYYRKYSAVRRDGSFHYVH-STPFGNYSF---------IC--V 186

Query: 165 DDFLSQQPERPRDV-----KLARTQLSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHC 219
           D  ++  P+RP +      K    +L  L K+  ++R ++ +  GH+   +I    P   
Sbjct: 187 DATVNPGPKRPYNFFGILDKKKMEELLLLAKE--SSRSNHTIWFGHFTTSTILSPSPG-- 242

Query: 220 LVKQLRPLLATYGVTAYLCGHDHNL 244
               +R ++++    AYLCGH H L
Sbjct: 243 ----IRSIMSS--AIAYLCGHLHTL 261


>gi|192807300 calcium channel, voltage-dependent, L type, alpha 1D
           subunit isoform b [Homo sapiens]
          Length = 2161

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 23/222 (10%)

Query: 36  GVPNAPFHTAREMANAK---EIARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFED 92
           GV +  F   RE A A+   +  R  Q L  D     G   + T  +DI+ +  +E  E+
Sbjct: 403 GVLSGEFSKEREKAKARGDFQKLREKQQLEEDL---KGYLDWITQAEDIDPENEEEGGEE 459

Query: 93  VFSDRSL-----RKVPWYVLAG---NHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIP 144
              + S+       V    ++G   N    G++   I+ SK+S+RW   + F R   +  
Sbjct: 460 GKRNTSMPTSETESVNTENVSGEGENRGCCGSLCQAISKSKLSRRWRRWNRFNRRRCRAA 519

Query: 145 QTNVS-----VAIFMLDTVTLCG---NSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAR 196
             +V+     + +  L+T+T+     N  D+L+Q  +    V LA      L K  +   
Sbjct: 520 VKSVTFYWLVIVLVFLNTLTISSEHYNQPDWLTQIQDIANKVLLALFTCEMLVKMYSLGL 579

Query: 197 EDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLC 238
           + Y +   +     +   G T  ++ +L  +++  G++ + C
Sbjct: 580 QAYFVSLFNRFDCFVVCGGITETILVELE-IMSPLGISVFRC 620


>gi|192807298 calcium channel, voltage-dependent, L type, alpha 1D
           subunit isoform c [Homo sapiens]
          Length = 2137

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 23/222 (10%)

Query: 36  GVPNAPFHTAREMANAK---EIARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFED 92
           GV +  F   RE A A+   +  R  Q L  D     G   + T  +DI+ +  +E  E+
Sbjct: 403 GVLSGEFSKEREKAKARGDFQKLREKQQLEEDL---KGYLDWITQAEDIDPENEEEGGEE 459

Query: 93  VFSDRSL-----RKVPWYVLAG---NHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIP 144
              + S+       V    ++G   N    G++   I+ SK+S+RW   + F R   +  
Sbjct: 460 GKRNTSMPTSETESVNTENVSGEGENRGCCGSLCQAISKSKLSRRWRRWNRFNRRRCRAA 519

Query: 145 QTNVS-----VAIFMLDTVTLCG---NSDDFLSQQPERPRDVKLARTQLSWLKKQLAAAR 196
             +V+     + +  L+T+T+     N  D+L+Q  +    V LA      L K  +   
Sbjct: 520 VKSVTFYWLVIVLVFLNTLTISSEHYNQPDWLTQIQDIANKVLLALFTCEMLVKMYSLGL 579

Query: 197 EDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLC 238
           + Y +   +     +   G T  ++ +L  +++  G++ + C
Sbjct: 580 QAYFVSLFNRFDCFVVCGGITETILVELE-IMSPLGISVFRC 620


>gi|126012573 low density lipoprotein-related protein 2 [Homo
           sapiens]
          Length = 4655

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 235 AYLCGHDHNLQYLQDENGVGYVLSGAGNFMDPSKR 269
           AY+C HD++ Q   DE+   Y   G   F  PS R
Sbjct: 199 AYVCDHDNDCQDGSDEHACNYPTCGGYQFTCPSGR 233


>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
            sapiens]
          Length = 1242

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 185  LSWLKKQLAAAREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNL 244
            L+WL+ + AAA +++ L A     W  A+H P    +  L+   A  G+   L   D NL
Sbjct: 1173 LAWLEHRCAAAFDEWELTAAKADCWLRAQHLPDGLDLAALK--AAARGLFLLLRHWDQNL 1230

Query: 245  Q 245
            Q
Sbjct: 1231 Q 1231


>gi|224994189 prominin 1 isoform 2 [Homo sapiens]
          Length = 856

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 27/146 (18%)

Query: 47  EMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYV 106
           E   +KE+ R   +L   ++L+    +Y +G +  N  + + TFE V+SD          
Sbjct: 508 EPYTSKELFR---VLDTPYLLNEDWEYYLSG-KLFNKSKMKLTFEQVYSD---------- 553

Query: 107 LAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTV-------- 158
              N    G +  Q +++ IS+  N       +  ++    V++ IF+L           
Sbjct: 554 CKKNRGTYGTLHLQNSFN-ISEHLNINEHTGSISSELESLKVNLNIFLLGAAGRKNLQDF 612

Query: 159 TLCG----NSDDFLSQQPERPRDVKL 180
             CG    N D +L+Q  + P  V L
Sbjct: 613 AACGIDRMNYDSYLAQTGKSPAGVNL 638


>gi|224994199 prominin 1 isoform 4 [Homo sapiens]
          Length = 825

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 27/146 (18%)

Query: 47  EMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYV 106
           E   +KE+ R   +L   ++L+    +Y +G +  N  + + TFE V+SD          
Sbjct: 508 EPYTSKELFR---VLDTPYLLNEDWEYYLSG-KLFNKSKMKLTFEQVYSD---------- 553

Query: 107 LAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTV-------- 158
              N    G +  Q +++ IS+  N       +  ++    V++ IF+L           
Sbjct: 554 CKKNRGTYGTLHLQNSFN-ISEHLNINEHTGSISSELESLKVNLNIFLLGAAGRKNLQDF 612

Query: 159 TLCG----NSDDFLSQQPERPRDVKL 180
             CG    N D +L+Q  + P  V L
Sbjct: 613 AACGIDRMNYDSYLAQTGKSPAGVNL 638


>gi|224994197 prominin 1 isoform 5 [Homo sapiens]
          Length = 833

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 27/146 (18%)

Query: 47  EMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYV 106
           E   +KE+ R   +L   ++L+    +Y +G +  N  + + TFE V+SD          
Sbjct: 508 EPYTSKELFR---VLDTPYLLNEDWEYYLSG-KLFNKSKMKLTFEQVYSD---------- 553

Query: 107 LAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTV-------- 158
              N    G +  Q +++ IS+  N       +  ++    V++ IF+L           
Sbjct: 554 CKKNRGTYGTLHLQNSFN-ISEHLNINEHTGSISSELESLKVNLNIFLLGAAGRKNLQDF 612

Query: 159 TLCG----NSDDFLSQQPERPRDVKL 180
             CG    N D +L+Q  + P  V L
Sbjct: 613 AACGIDRMNYDSYLAQTGKSPAGVNL 638


>gi|224994195 prominin 1 isoform 6 [Homo sapiens]
          Length = 834

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 27/146 (18%)

Query: 47  EMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYV 106
           E   +KE+ R   +L   ++L+    +Y +G +  N  + + TFE V+SD          
Sbjct: 517 EPYTSKELFR---VLDTPYLLNEDWEYYLSG-KLFNKSKMKLTFEQVYSD---------- 562

Query: 107 LAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTV-------- 158
              N    G +  Q +++ IS+  N       +  ++    V++ IF+L           
Sbjct: 563 CKKNRGTYGTLHLQNSFN-ISEHLNINEHTGSISSELESLKVNLNIFLLGAAGRKNLQDF 621

Query: 159 TLCG----NSDDFLSQQPERPRDVKL 180
             CG    N D +L+Q  + P  V L
Sbjct: 622 AACGIDRMNYDSYLAQTGKSPAGVNL 647


>gi|224994193 prominin 1 isoform 7 [Homo sapiens]
          Length = 842

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 27/146 (18%)

Query: 47  EMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYV 106
           E   +KE+ R   +L   ++L+    +Y +G +  N  + + TFE V+SD          
Sbjct: 517 EPYTSKELFR---VLDTPYLLNEDWEYYLSG-KLFNKSKMKLTFEQVYSD---------- 562

Query: 107 LAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTV-------- 158
              N    G +  Q +++ IS+  N       +  ++    V++ IF+L           
Sbjct: 563 CKKNRGTYGTLHLQNSFN-ISEHLNINEHTGSISSELESLKVNLNIFLLGAAGRKNLQDF 621

Query: 159 TLCG----NSDDFLSQQPERPRDVKL 180
             CG    N D +L+Q  + P  V L
Sbjct: 622 AACGIDRMNYDSYLAQTGKSPAGVNL 647


>gi|224994191 prominin 1 isoform 2 [Homo sapiens]
          Length = 856

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 27/146 (18%)

Query: 47  EMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYV 106
           E   +KE+ R   +L   ++L+    +Y +G +  N  + + TFE V+SD          
Sbjct: 508 EPYTSKELFR---VLDTPYLLNEDWEYYLSG-KLFNKSKMKLTFEQVYSD---------- 553

Query: 107 LAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTV-------- 158
              N    G +  Q +++ IS+  N       +  ++    V++ IF+L           
Sbjct: 554 CKKNRGTYGTLHLQNSFN-ISEHLNINEHTGSISSELESLKVNLNIFLLGAAGRKNLQDF 612

Query: 159 TLCG----NSDDFLSQQPERPRDVKL 180
             CG    N D +L+Q  + P  V L
Sbjct: 613 AACGIDRMNYDSYLAQTGKSPAGVNL 638


>gi|5174387 prominin 1 isoform 1 [Homo sapiens]
          Length = 865

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 27/146 (18%)

Query: 47  EMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYV 106
           E   +KE+ R   +L   ++L+    +Y +G +  N  + + TFE V+SD          
Sbjct: 517 EPYTSKELFR---VLDTPYLLNEDWEYYLSG-KLFNKSKMKLTFEQVYSD---------- 562

Query: 107 LAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTV-------- 158
              N    G +  Q +++ IS+  N       +  ++    V++ IF+L           
Sbjct: 563 CKKNRGTYGTLHLQNSFN-ISEHLNINEHTGSISSELESLKVNLNIFLLGAAGRKNLQDF 621

Query: 159 TLCG----NSDDFLSQQPERPRDVKL 180
             CG    N D +L+Q  + P  V L
Sbjct: 622 AACGIDRMNYDSYLAQTGKSPAGVNL 647


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,311,371
Number of Sequences: 37866
Number of extensions: 522132
Number of successful extensions: 914
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 16
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.