Guide to the Human Genome
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Name: KCNU1 Sequence: fasta or formatted (1149aa) NCBI GI: 157074214
Description:

potassium channel, subfamily U, member 1

Referenced in:

Potassium Channels
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         54           2
 C cysteine            2.5         29           1
 D aspartate           4.4         51           2
 E glutamate           5.0         58           3
 F phenylalanine       6.5         75           2
 G glycine             5.0         58           2
 H histidine           1.9         22           1
 I isoleucine          7.8         90           3
 K lysine              5.6         64           2
 L leucine            11.1        128           3
 M methionine          1.8         21           1
 N asparagine          4.7         54           1
 P proline             4.4         51           3
 Q glutamine           3.5         40           1
 R arginine            4.4         50           2
 S serine             10.2        117           3
 T threonine           6.7         77           2
 V valine              5.4         62           2
 W tryptophan          1.3         15           1
 Y tyrosine            2.9         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium channel, subfamily U, member 1 
KCNMA1                0.379   large conductance calcium-activated potassium channe...
KCNMA1                0.379   large conductance calcium-activated potassium channe...
KCNMA1                0.374   large conductance calcium-activated potassium chann...
KCNMA1                0.371   large conductance calcium-activated potassium chann...
KCNT2                 0.051   potassium channel, subfamily T, member 2 
KCNT1                 0.038   potassium channel, subfamily T, member 1 
KCNB1                 0.015   potassium voltage-gated channel, Shab-related subfami...
KCNB2                 0.015   potassium voltage-gated channel, Shab-related subfam...
KCNG4                 0.013   potassium voltage-gated channel, subfamily G, member...
KCNG2                 0.013   potassium voltage-gated channel, subfamily G, member ...
KCND3                 0.012   potassium voltage-gated channel, Shal-related subfam...
KCND3                 0.012   potassium voltage-gated channel, Shal-related subfam...
KCNG1                 0.012   potassium voltage-gated channel, subfamily G, member...
KCND2                 0.011   potassium voltage-gated channel, Shal-related subfami...
KCNA2                 0.011   potassium voltage-gated channel, shaker-related subfa...
KCND1                 0.011   potassium voltage-gated channel, Shal-related subfam...
KCNQ1                 0.010   potassium voltage-gated channel, KQT-like subfamily,...
KCNS2                 0.010   potassium voltage-gated channel, delayed-rectifier, ...
KCNA10                0.010   potassium voltage-gated channel, shaker-related subfa...
KCNF1                 0.010   potassium voltage-gated channel, subfamily F, member...
KCNC3                 0.010   Shaw-related voltage-gated potassium channel protein...
KCNQ1                 0.009   potassium voltage-gated channel, KQT-like subfamily,...
KCNV1                 0.009   potassium channel, subfamily V, member 1 
KCNH4                 0.008   potassium voltage-gated channel, subfamily H, member ...
KCNH1                 0.008   potassium voltage-gated channel, subfamily H, member ...
KCNH1                 0.008   potassium voltage-gated channel, subfamily H, member...
KCNA3                 0.008   potassium voltage-gated channel, shaker-related subf...
KCNV2                 0.007   potassium channel, subfamily V, member 2 
KCNQ2                 0.007   potassium voltage-gated channel KQT-like protein 2 i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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