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Search of human proteins with 110349765
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110349765 hypothetical protein LOC122616 [Homo sapiens]
(325 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110349765 hypothetical protein LOC122616 [Homo sapiens] 669 0.0
gi|50409856 aftiphilin protein isoform c [Homo sapiens] 44 1e-04
gi|50409939 aftiphilin protein isoform a [Homo sapiens] 44 1e-04
gi|50409903 aftiphilin protein isoform b [Homo sapiens] 44 1e-04
gi|115647981 glutamine and serine rich 1 [Homo sapiens] 32 0.59
gi|7706435 headcase [Homo sapiens] 32 0.77
gi|41406089 SRY-box 13 [Homo sapiens] 32 0.77
gi|148727251 zinc finger protein 81 [Homo sapiens] 32 1.0
gi|7657214 hormonally upregulated Neu-associated kinase [Homo sa... 31 1.3
gi|110624785 NACHT, leucine rich repeat and PYD containing 13 [H... 30 2.2
gi|19923597 Sin3A-associated protein, 130kDa isoform b [Homo sap... 30 2.9
gi|225579127 Sin3A-associated protein, 130kDa isoform a [Homo sa... 30 2.9
gi|7657138 golgi integral membrane protein 4 [Homo sapiens] 30 2.9
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 30 3.8
gi|239751049 PREDICTED: similar to ATPase, Ca++ transporting, fa... 30 3.8
gi|87196343 PDZ domain containing 2 [Homo sapiens] 30 3.8
gi|38524620 prickle-like 2 [Homo sapiens] 30 3.8
gi|197382841 zinc finger protein 485 [Homo sapiens] 30 3.8
gi|110431348 deleted in colorectal carcinoma [Homo sapiens] 29 5.0
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom... 29 5.0
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom... 29 5.0
gi|16933561 sarcospan isoform 1 [Homo sapiens] 29 5.0
gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens] 29 5.0
gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens] 29 5.0
gi|16445438 bromodomain and WD repeat domain containing 1 isofor... 29 5.0
gi|16445436 bromodomain and WD repeat domain containing 1 isofor... 29 5.0
gi|109150431 ring finger protein 31 [Homo sapiens] 29 6.5
gi|116174738 pappalysin 2 isoform 1 [Homo sapiens] 29 6.5
gi|28827813 NLR family, pyrin domain containing 14 [Homo sapiens] 29 6.5
gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo ... 28 8.5
>gi|110349765 hypothetical protein LOC122616 [Homo sapiens]
Length = 325
Score = 669 bits (1727), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Query: 1 MQGRRELGGEPLSDLQEEAASASLRVAPERLSDDSLEWRRTCPDLLLSDGKASISMPREG 60
MQGRRELGGEPLSDLQEEAASASLRVAPERLSDDSLEWRRTCPDLLLSDGKASISMPREG
Sbjct: 1 MQGRRELGGEPLSDLQEEAASASLRVAPERLSDDSLEWRRTCPDLLLSDGKASISMPREG 60
Query: 61 GSTCTARCPDPGEHSSTWGEFEGFRESSAKSGQFSQSLELLEGPTEPQPPRTTSAPKECS 120
GSTCTARCPDPGEHSSTWGEFEGFRESSAKSGQFSQSLELLEGPTEPQPPRTTSAPKECS
Sbjct: 61 GSTCTARCPDPGEHSSTWGEFEGFRESSAKSGQFSQSLELLEGPTEPQPPRTTSAPKECS 120
Query: 121 SHQPCQGGPWVTGTSAVPPSEPILSYENILKCAFQEITVQQAAEDVSTIDHFLEISSEEK 180
SHQPCQGGPWVTGTSAVPPSEPILSYENILKCAFQEITVQQAAEDVSTIDHFLEISSEEK
Sbjct: 121 SHQPCQGGPWVTGTSAVPPSEPILSYENILKCAFQEITVQQAAEDVSTIDHFLEISSEEK 180
Query: 181 PGVERVHKLCNESRKLWRALQSIHTTSTSQRLWSESRCQENFFLVLGIDAAQKNLSGGQG 240
PGVERVHKLCNESRKLWRALQSIHTTSTSQRLWSESRCQENFFLVLGIDAAQKNLSGGQG
Sbjct: 181 PGVERVHKLCNESRKLWRALQSIHTTSTSQRLWSESRCQENFFLVLGIDAAQKNLSGGQG 240
Query: 241 HIMEDCDLKEPEGLLTVSSFCLQHCKALIQTKLSGPPGSKQGRLMTCSRFLKTPSCGGGQ 300
HIMEDCDLKEPEGLLTVSSFCLQHCKALIQTKLSGPPGSKQGRLMTCSRFLKTPSCGGGQ
Sbjct: 241 HIMEDCDLKEPEGLLTVSSFCLQHCKALIQTKLSGPPGSKQGRLMTCSRFLKTPSCGGGQ 300
Query: 301 HITIPRKRMFTPRKLKLTLFNSDVC 325
HITIPRKRMFTPRKLKLTLFNSDVC
Sbjct: 301 HITIPRKRMFTPRKLKLTLFNSDVC 325
>gi|50409856 aftiphilin protein isoform c [Homo sapiens]
Length = 908
Score = 44.3 bits (103), Expect = 1e-04
Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 4/171 (2%)
Query: 70 DPGEHSSTWGEFEGFRESSAKSGQFS-QSLELLEGPTEPQPPRTTSAPKECSSHQPCQGG 128
D + S +W F + + + + + QS E P P+T S P S G
Sbjct: 577 DEQKDSCSWAAFGDQQATESHHRKEAWQSHRTDENIDTPGTPKTHSVPSATSKGAVASGH 636
Query: 129 PWVTGTSAVPPSEPILSYENILKCAFQEITVQQAAEDVSTIDHFLEISSEEKPGVERVHK 188
+ TS + + E I + F I V A E+V+++ H LE S+ E + +
Sbjct: 637 LQESATSV--QTALLNRLERIFEACFPSILVPDAEEEVTSLKHLLETSTLPIKTREALPE 694
Query: 189 LCNESRKLWRALQSIHTTSTSQRLWSESRCQENFFLVLGIDAAQKNLSGGQ 239
E +W LQ IH + W S + LGID +G +
Sbjct: 695 -SGELLDVWTELQDIHDAHGLRYQWGGSHSNKKLLSSLGIDTRNILFTGNK 744
>gi|50409939 aftiphilin protein isoform a [Homo sapiens]
Length = 936
Score = 44.3 bits (103), Expect = 1e-04
Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 4/171 (2%)
Query: 70 DPGEHSSTWGEFEGFRESSAKSGQFS-QSLELLEGPTEPQPPRTTSAPKECSSHQPCQGG 128
D + S +W F + + + + + QS E P P+T S P S G
Sbjct: 577 DEQKDSCSWAAFGDQQATESHHRKEAWQSHRTDENIDTPGTPKTHSVPSATSKGAVASGH 636
Query: 129 PWVTGTSAVPPSEPILSYENILKCAFQEITVQQAAEDVSTIDHFLEISSEEKPGVERVHK 188
+ TS + + E I + F I V A E+V+++ H LE S+ E + +
Sbjct: 637 LQESATSV--QTALLNRLERIFEACFPSILVPDAEEEVTSLKHLLETSTLPIKTREALPE 694
Query: 189 LCNESRKLWRALQSIHTTSTSQRLWSESRCQENFFLVLGIDAAQKNLSGGQ 239
E +W LQ IH + W S + LGID +G +
Sbjct: 695 -SGELLDVWTELQDIHDAHGLRYQWGGSHSNKKLLSSLGIDTRNILFTGNK 744
>gi|50409903 aftiphilin protein isoform b [Homo sapiens]
Length = 909
Score = 44.3 bits (103), Expect = 1e-04
Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 4/171 (2%)
Query: 70 DPGEHSSTWGEFEGFRESSAKSGQFS-QSLELLEGPTEPQPPRTTSAPKECSSHQPCQGG 128
D + S +W F + + + + + QS E P P+T S P S G
Sbjct: 577 DEQKDSCSWAAFGDQQATESHHRKEAWQSHRTDENIDTPGTPKTHSVPSATSKGAVASGH 636
Query: 129 PWVTGTSAVPPSEPILSYENILKCAFQEITVQQAAEDVSTIDHFLEISSEEKPGVERVHK 188
+ TS + + E I + F I V A E+V+++ H LE S+ E + +
Sbjct: 637 LQESATSV--QTALLNRLERIFEACFPSILVPDAEEEVTSLKHLLETSTLPIKTREALPE 694
Query: 189 LCNESRKLWRALQSIHTTSTSQRLWSESRCQENFFLVLGIDAAQKNLSGGQ 239
E +W LQ IH + W S + LGID +G +
Sbjct: 695 -SGELLDVWTELQDIHDAHGLRYQWGGSHSNKKLLSSLGIDTRNILFTGNK 744
>gi|115647981 glutamine and serine rich 1 [Homo sapiens]
Length = 1735
Score = 32.3 bits (72), Expect = 0.59
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 104 PTEPQPPRTTSAPKECSSHQPCQGGPWVTGTSAVPPSEPILSYENILKCAFQEITVQQAA 163
P+ PP TT K CS+ QP S +PP + LSY L I+ Q
Sbjct: 269 PSSGYPPSTTKI-KSCSTEQPLTSTKTPKPQSIIPPVQ-TLSYSKPLHNQSSVISGQAQI 326
Query: 164 EDVSTIDHFLEISSEEKPGVERVHKL 189
+ + L +S + G+ + H +
Sbjct: 327 YSTAQLPSLLSVSQSQNYGLVQPHNV 352
>gi|7706435 headcase [Homo sapiens]
Length = 543
Score = 32.0 bits (71), Expect = 0.77
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 179 EKPGVERVHKLCNESR---KLWRALQSIHTTSTS----------QRLWSESRCQENFFLV 225
EK ++V +CN W LQ + +S R W+E +C++N +
Sbjct: 109 EKDDYQKV--VCNNEHCPCSTWMHLQCFYEWESSILVQFNCIGRARSWNEKQCRQNMWTK 166
Query: 226 LGIDAAQKNLS--GGQGHIMEDCD 247
G D A + S GQGH+ +D D
Sbjct: 167 KGYDLAFRFCSCRCGQGHLKKDTD 190
>gi|41406089 SRY-box 13 [Homo sapiens]
Length = 622
Score = 32.0 bits (71), Expect = 0.77
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 95 SQSLELLEGPTEPQPPRTTSAP----KECSSHQPCQGGPWVTGTSAVPPSEPI 143
SQ L L P P+ P T+S+P C P GGP + PPS P+
Sbjct: 290 SQPLNLTAKPKAPELPNTSSSPSLKMSSCVPRPPSHGGP-TRDLQSSPPSLPL 341
>gi|148727251 zinc finger protein 81 [Homo sapiens]
Length = 661
Score = 31.6 bits (70), Expect = 1.0
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 174 EISSEEKPGVERVHKLCNESRKLWRALQSI---HTTSTSQRLWSESRCQENFFLVLGIDA 230
E+ EK CNE K + + S+ TT T ++L+ S C + F L ++
Sbjct: 344 ELIMHEKTHTREKPYKCNECGKSFFQVSSLLRHQTTHTGEKLFECSECGKGFSLNSALNI 403
Query: 231 AQKNLSGGQGHIMEDC 246
QK +G + H +C
Sbjct: 404 HQKIHTGERHHKCSEC 419
>gi|7657214 hormonally upregulated Neu-associated kinase [Homo
sapiens]
Length = 714
Score = 31.2 bits (69), Expect = 1.3
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 84 FRESSAKSGQFSQSLELLEGPTEPQPPRTTSAPKECSSHQPCQGGPWVTGTSAVPPSEPI 143
FR++S + S S+E + P PPRT K+ HQP GP G++ +P E
Sbjct: 504 FRKTSDSNCVASSSMEFIPVP----PPRTPRIVKKPEPHQP---GP---GSTGIPHKEDP 553
Query: 144 LSYENILKCAFQEITVQQAAEDVSTIDHFLEISS 177
L + + +F+ + E +S H+ ++S
Sbjct: 554 LMLDMVR--SFESVDRDDHVEVLSPSHHYRILNS 585
>gi|110624785 NACHT, leucine rich repeat and PYD containing 13 [Homo
sapiens]
Length = 1043
Score = 30.4 bits (67), Expect = 2.2
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 240 GHIME-DCDLKEPEGLLTVSSFCLQHCKALIQTKLS 274
G I E D ++ E E L SSFCL+HCK L + +LS
Sbjct: 656 GRIFEVDLNILEDEEL-QASSFCLKHCKRLNKLRLS 690
>gi|19923597 Sin3A-associated protein, 130kDa isoform b [Homo
sapiens]
Length = 1048
Score = 30.0 bits (66), Expect = 2.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 85 RESSAKSGQFSQSLELLEGPTEPQPPRTTSAPK-ECSSHQPCQGGPWVTGTSAVPPS 140
R ++A + S + + PT P T+ P + HQP Q P VT ++A+PP+
Sbjct: 232 RGAAAAAVMSSSKVTTVLRPTSQLPNAATAQPAVQHIIHQPIQSRPPVTTSNAIPPA 288
>gi|225579127 Sin3A-associated protein, 130kDa isoform a [Homo
sapiens]
Length = 1083
Score = 30.0 bits (66), Expect = 2.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 85 RESSAKSGQFSQSLELLEGPTEPQPPRTTSAPK-ECSSHQPCQGGPWVTGTSAVPPS 140
R ++A + S + + PT P T+ P + HQP Q P VT ++A+PP+
Sbjct: 232 RGAAAAAVMSSSKVTTVLRPTSQLPNAATAQPAVQHIIHQPIQSRPPVTTSNAIPPA 288
>gi|7657138 golgi integral membrane protein 4 [Homo sapiens]
Length = 696
Score = 30.0 bits (66), Expect = 2.9
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 172 FLEISSEEKPGV----ERVHKLCNESRKLWRALQSIHTTSTSQRLWSESRCQENFFLVLG 227
+L++ E++ + E V+ L E+R+L +A Q IHT + ++ E+ LV+
Sbjct: 157 YLQLQQEKEQELSKLKETVYNLREENRQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVT 216
Query: 228 IDAAQKNLSGGQGHIMEDCDLKE 250
++ + L+ Q + E LK+
Sbjct: 217 LEDHKSALAAAQTQVAEYKQLKD 239
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
sapiens]
Length = 1341
Score = 29.6 bits (65), Expect = 3.8
Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 17/154 (11%)
Query: 2 QGRRELGGEPLSDLQEEAASASLRVAPERLSDDSLEWRRTCPDLLLSDGKASISMPREGG 61
+G++ L + +EE RV PE + D+ + R ++L G+ + S E
Sbjct: 291 EGQKSREAPILKEFKEEGEEIP-RVKPEEMMDERPKTRSQEQEVLERGGRFTRSQ-EEAR 348
Query: 62 STCTARCPDPGEHSSTWGEFEGFRESSAKSGQFSQSLELLEGPTEPQPPRTTSAPKECS- 120
+ AR E +T E RE + G L E P PPR T K+ S
Sbjct: 349 KSHLARQQQEKEMKTTSPLEEEEREIKSSQG-------LKEKSKSPSPPRLTEDRKKASL 401
Query: 121 -------SHQPCQGGPWVTGTSAVPPSEPILSYE 147
+ + P +T ++ PP P L E
Sbjct: 402 VALPEQTASEEETPPPLLTKEASSPPPHPQLHSE 435
>gi|239751049 PREDICTED: similar to ATPase, Ca++ transporting, fast
twitch 1 [Homo sapiens]
Length = 879
Score = 29.6 bits (65), Expect = 3.8
Identities = 40/135 (29%), Positives = 53/135 (39%), Gaps = 22/135 (16%)
Query: 8 GGEPLSD-LQEEAASASLRVAPERLSDDSLEWRRTCPDLLL----------SDGKASISM 56
G P+SD L A + +L V+ E LS DS R+CP L L A ++
Sbjct: 43 GAIPVSDSLVRGALNDALGVSCEFLSWDSSRLPRSCPSLRLPLSMFGHSHCCKTVAPVTP 102
Query: 57 PREGGSTCTARCPDPGEHSSTWGE----FEGFRESSAKSGQFSQS--LELLEGPTEPQPP 110
P GG T + G + G+ F ++ + S LE L GP P P
Sbjct: 103 PGAGGETPASAKSLGGCEPESSGDGLDICPYFPQTCPQKSTLPHSFGLEPLLGPASPGPD 162
Query: 111 RTTS-----APKECS 120
S APK CS
Sbjct: 163 TFLSHSLPLAPKRCS 177
>gi|87196343 PDZ domain containing 2 [Homo sapiens]
Length = 2839
Score = 29.6 bits (65), Expect = 3.8
Identities = 31/128 (24%), Positives = 44/128 (34%), Gaps = 29/128 (22%)
Query: 12 LSDLQEEAASASLRVAPERLSDDSLEWRRTCPDLLLSDGKASISMPREGGSTCTARCPDP 71
LS L + +L A L + + DL+ S GK A PDP
Sbjct: 1202 LSHLDASHLTENLPKAASELGQQPMTELDSSSDLISSPGKKG------------AAHPDP 1249
Query: 72 GEHSSTWGEFEGFRESSAKSGQFSQSLELLEGPTEPQPPRTTSAPKECSSHQPCQGGPWV 131
+ +S +GQ S+ E P++P PR T P +G P
Sbjct: 1250 SK-------------TSVDTGQVSRP----ENPSQPASPRVTKCKARSPVRLPHEGSPSP 1292
Query: 132 TGTSAVPP 139
+A PP
Sbjct: 1293 GEKAAAPP 1300
>gi|38524620 prickle-like 2 [Homo sapiens]
Length = 844
Score = 29.6 bits (65), Expect = 3.8
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 22/75 (29%)
Query: 226 LGIDAAQKNLSGGQGHIMEDCDLKEPEGLLTVSSFCLQHCKALIQTKLSGPPGSKQGRLM 285
+GID Q G H E C FC HCK ++ L P KQG++
Sbjct: 262 IGIDQGQMTYDGQHWHATETC-------------FCCAHCK---KSLLGRPFLPKQGQIF 305
Query: 286 TCSRFLKTPSCGGGQ 300
CSR +C G+
Sbjct: 306 -CSR-----ACSAGE 314
>gi|197382841 zinc finger protein 485 [Homo sapiens]
Length = 441
Score = 29.6 bits (65), Expect = 3.8
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Query: 135 SAVPPSEPILSYENILKCAFQEITVQQAAEDVSTIDHFLEISSEEKPGVERVHKLCNESR 194
+A+ E I S E KC +A D ST+ +I + EKP CNE
Sbjct: 255 AALTRHERIHSGEKPFKCN----KCGRAFRDNSTVLEHQKIHTGEKP------YQCNECG 304
Query: 195 KLWR---ALQSIHTTSTSQRLWSESRCQENFFLVLGIDAAQKNLSGGQGHIMEDC 246
K +R L S T ++ + S+C ++F QK SG + + DC
Sbjct: 305 KAFRKSSTLISHQRMHTGEKPYHCSKCGKSFRYSSSFAGHQKTHSGNKPYQCRDC 359
>gi|110431348 deleted in colorectal carcinoma [Homo sapiens]
Length = 1447
Score = 29.3 bits (64), Expect = 5.0
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 96 QSLELLEGPTEPQPPRTTSAPKECSSHQPCQGGPWVTGTSAVPPSEPILSYENIL 150
+S + EGPT QPP + E SS + + T+ V P+ P+ S+ N L
Sbjct: 1297 RSQSVSEGPTTQQPPMLPPSQPEHSSSE--EAPSRTIPTACVRPTHPLRSFANPL 1349
>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
sapiens]
Length = 1108
Score = 29.3 bits (64), Expect = 5.0
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 101 LEGPTEPQPPRTTSAPKECSSHQPCQGGPWVTGTSAVPPSEPILSYENILKCAFQEITVQ 160
L+ PT+P P A K SS TG + PS+P L L A+ + Q
Sbjct: 536 LKQPTQPPPLPAAEAEKPESSVSSA------TGDGNLSPSQPPLKNLLSLLKAYYALNAQ 589
Query: 161 QAAEDVSTI 169
+AE++S I
Sbjct: 590 PSAEELSKI 598
>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
sapiens]
Length = 1124
Score = 29.3 bits (64), Expect = 5.0
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 101 LEGPTEPQPPRTTSAPKECSSHQPCQGGPWVTGTSAVPPSEPILSYENILKCAFQEITVQ 160
L+ PT+P P A K SS TG + PS+P L L A+ + Q
Sbjct: 552 LKQPTQPPPLPAAEAEKPESSVSSA------TGDGNLSPSQPPLKNLLSLLKAYYALNAQ 605
Query: 161 QAAEDVSTI 169
+AE++S I
Sbjct: 606 PSAEELSKI 614
>gi|16933561 sarcospan isoform 1 [Homo sapiens]
Length = 243
Score = 29.3 bits (64), Expect = 5.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 103 GPTEPQPPRTTSAPKECSSHQP 124
GP + +P + T APKEC +P
Sbjct: 23 GPDDMEPKKGTGAPKECGEEEP 44
>gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens]
Length = 1251
Score = 29.3 bits (64), Expect = 5.0
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 23/136 (16%)
Query: 13 SDLQEEAASASLRVAPERLSDDSLEWRRTCPDLLLSDGKASISMPREGGSTCTARCPDPG 72
SD +E A+ R A LSD ++ + C S+P GS+
Sbjct: 399 SDEEENEQQAAQRTALRALSDSAVVQQPNC----------RTSVPSSKGSSS-------- 440
Query: 73 EHSSTWGEFEGFRESSAKSGQFSQSLELLEGPTEPQPPRTTSAPKECSSHQPCQGGPWVT 132
SS+ G +S + SG S++ +PP +S E +S Q W+
Sbjct: 441 --SSSSGSSSSSSDSESSSGSDSETESSSSESEGSKPPHFSSPEAEPASSNKWQLDKWL- 497
Query: 133 GTSAVPPSEPILSYEN 148
+ V P +P + +N
Sbjct: 498 --NKVNPHKPPILIQN 511
>gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens]
Length = 1226
Score = 29.3 bits (64), Expect = 5.0
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 23/136 (16%)
Query: 13 SDLQEEAASASLRVAPERLSDDSLEWRRTCPDLLLSDGKASISMPREGGSTCTARCPDPG 72
SD +E A+ R A LSD ++ + C S+P GS+
Sbjct: 374 SDEEENEQQAAQRTALRALSDSAVVQQPNC----------RTSVPSSKGSSS-------- 415
Query: 73 EHSSTWGEFEGFRESSAKSGQFSQSLELLEGPTEPQPPRTTSAPKECSSHQPCQGGPWVT 132
SS+ G +S + SG S++ +PP +S E +S Q W+
Sbjct: 416 --SSSSGSSSSSSDSESSSGSDSETESSSSESEGSKPPHFSSPEAEPASSNKWQLDKWL- 472
Query: 133 GTSAVPPSEPILSYEN 148
+ V P +P + +N
Sbjct: 473 --NKVNPHKPPILIQN 486
>gi|16445438 bromodomain and WD repeat domain containing 1 isoform B
[Homo sapiens]
Length = 2269
Score = 29.3 bits (64), Expect = 5.0
Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 12/149 (8%)
Query: 48 SDGKASISMPREGGSTCTARCPDPGEHSSTWGEFEGFRESSAKSGQFSQSLELLEG---- 103
SD +S R+ TC + P+ G + +W E ESS+ S + S + EG
Sbjct: 784 SDSVVLVSQSRQ--RTCRRKYPNYGRRNRSWRELSSGNESSS-SVRHETSCDQSEGSGSS 840
Query: 104 -PTEPQPPRTTSAPKECSSHQPCQGGPWV--TGTSAVPPSEPILSYENILKCAFQEITVQ 160
E + R + + E SS + W G + PP C+ E +
Sbjct: 841 EEDEWRSDRKSESYSESSSDSSSRYSDWTADAGINLQPPLRTSCRRRITRFCSSSEDEI- 899
Query: 161 QAAEDVSTIDHFLEISSEEKPGVERVHKL 189
+ E++S + E KP E + ++
Sbjct: 900 -STENLSPPKRRRKRKKENKPKKENLRRM 927
>gi|16445436 bromodomain and WD repeat domain containing 1 isoform A
[Homo sapiens]
Length = 2320
Score = 29.3 bits (64), Expect = 5.0
Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 12/149 (8%)
Query: 48 SDGKASISMPREGGSTCTARCPDPGEHSSTWGEFEGFRESSAKSGQFSQSLELLEG---- 103
SD +S R+ TC + P+ G + +W E ESS+ S + S + EG
Sbjct: 784 SDSVVLVSQSRQ--RTCRRKYPNYGRRNRSWRELSSGNESSS-SVRHETSCDQSEGSGSS 840
Query: 104 -PTEPQPPRTTSAPKECSSHQPCQGGPWV--TGTSAVPPSEPILSYENILKCAFQEITVQ 160
E + R + + E SS + W G + PP C+ E +
Sbjct: 841 EEDEWRSDRKSESYSESSSDSSSRYSDWTADAGINLQPPLRTSCRRRITRFCSSSEDEI- 899
Query: 161 QAAEDVSTIDHFLEISSEEKPGVERVHKL 189
+ E++S + E KP E + ++
Sbjct: 900 -STENLSPPKRRRKRKKENKPKKENLRRM 927
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 28.9 bits (63), Expect = 6.5
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 94 FSQSLELLEGPTEPQPPRTTSAPKECSSHQP---------CQGGPWVT----GTSAVPPS 140
++ SLE +GP +P PPR SAP S P +G V+ G +A
Sbjct: 448 YASSLE--KGPPKPGPPRRLSAPLPSSCGDPEKQRQDKMREEGLQLVSMIREGEAAGACP 505
Query: 141 EPILSYENILKCAFQEITVQQAAEDVS-TIDHFLEISSEEKPGVERVHKLCNESRKLW 197
E I S L+ + E+ +Q ++ ++ E++ ++ PG+ C E+R+ W
Sbjct: 506 EEIFS---ALQYSGTEVPLQWLRSELPYVLEMVAELAGQQDPGLGAFS--CQEARRAW 558
>gi|116174738 pappalysin 2 isoform 1 [Homo sapiens]
Length = 1791
Score = 28.9 bits (63), Expect = 6.5
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 90 KSGQFSQSLEL---LEGPTEPQPPRTTSAPKECSSHQPCQGGPWVTGTSAVPPSEPILSY 146
K G ++Q +L L+G P P S +C Q G + +PPS+P++
Sbjct: 1635 KEGLWTQEFKLCENLQGECPPPPSELNSVEYKCE--QGYGIGAVCSPLCVIPPSDPVMLP 1692
Query: 147 ENI 149
ENI
Sbjct: 1693 ENI 1695
>gi|28827813 NLR family, pyrin domain containing 14 [Homo sapiens]
Length = 1093
Score = 28.9 bits (63), Expect = 6.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 255 LTVSSFCLQHCKALIQTKLS 274
L VSSFCL+HC+ L +LS
Sbjct: 615 LLVSSFCLKHCRCLRTIRLS 634
>gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 28.5 bits (62), Expect = 8.5
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 72 GEHSSTWGEFEGFRESSAKSGQFSQSLELLEGPTEPQPPRTTSAPKECSSHQPCQG 127
G H G G +SS ++ L + PT P+P A +S +PC G
Sbjct: 204 GPHKRAVGAAAGAAQSSGLFSKWVPCQPLSQHPTGPEPSSRPHALSTAASPRPCWG 259
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,168,494
Number of Sequences: 37866
Number of extensions: 770348
Number of successful extensions: 3054
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 3042
Number of HSP's gapped (non-prelim): 38
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.