Guide to the Human Genome
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Name: FAM83F Sequence: fasta or formatted (500aa) NCBI GI: 156564372
Description:

hypothetical protein LOC113828

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         51           2
 C cysteine            1.2          6           1
 D aspartate           5.0         25           1
 E glutamate           8.0         40           2
 F phenylalanine       3.4         17           1
 G glycine             7.0         35           3
 H histidine           1.6          8           1
 I isoleucine          2.8         14           2
 K lysine              4.8         24           1
 L leucine             8.4         42           5
 M methionine          2.6         13           2
 N asparagine          2.6         13           1
 P proline             6.2         31           2
 Q glutamine           4.0         20           2
 R arginine            8.8         44           3
 S serine              8.6         43           3
 T threonine           4.0         20           1
 V valine              6.8         34           2
 W tryptophan          1.2          6           1
 Y tyrosine            2.8         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC113828 
FAM83G                0.268   hypothetical protein LOC644815 
FAM83E                0.191   hypothetical protein LOC54854 
FAM83D                0.160   hypothetical protein LOC81610 
FAM83H                0.146   FAM83H 
FAM83B                0.146   hypothetical protein LOC222584 
FAM83A                0.140   hypothetical protein LOC84985 isoform b 
FAM83A                0.140   hypothetical protein LOC84985 isoform a 
FAM83C                0.133   hypothetical protein LOC128876 
LRP3                  0.013   low density lipoprotein receptor-related protein 3 ...
LOC123855             0.012   PREDICTED: similar to hCG2042536 
LOC123855             0.012   PREDICTED: similar to hCG2042536 
SEL1L                 0.010   sel-1 suppressor of lin-12-like 
FLJ37078              0.010   hypothetical protein LOC222183 
SCARF1                0.009   scavenger receptor class F, member 1 isoform 1 precu...
SCARF1                0.009   scavenger receptor class F, member 1 isoform 5 prec...
GHR                   0.008   growth hormone receptor precursor 
FGR                   0.008   proto-oncogene tyrosine-protein kinase FGR 
FGR                   0.008   proto-oncogene tyrosine-protein kinase FGR 
FGR                   0.008   proto-oncogene tyrosine-protein kinase FGR 
SRRM2                 0.008   splicing coactivator subunit SRm300 
CLIC6                 0.008   chloride intracellular channel 6 
MYO18A                0.007   myosin 18A isoform b 
CLCN2                 0.007   chloride channel 2 
PLD4                  0.007   phospholipase D4 
SH2D3C                0.007   SH2 domain containing 3C isoform e 
SH2D3C                0.007   SH2 domain containing 3C isoform d 
SH2D3C                0.007   SH2 domain containing 3C isoform c 
SH2D3C                0.007   SH2 domain containing 3C isoform c 
SH2D3C                0.007   SH2 domain containing 3C isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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