Guide to the Human Genome
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Name: TSPAN19 Sequence: fasta or formatted (248aa) NCBI GI: 155369269
Description:

tetraspanin 19

Referenced in:

Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         10           1
 C cysteine            3.2          8           2
 D aspartate           3.2          8           1
 E glutamate           4.8         12           2
 F phenylalanine       6.5         16           2
 G glycine             5.6         14           1
 H histidine           2.0          5           1
 I isoleucine         10.5         26           3
 K lysine              6.9         17           2
 L leucine            12.5         31           3
 M methionine          1.6          4           1
 N asparagine          8.5         21           2
 P proline             1.6          4           1
 Q glutamine           3.6          9           2
 R arginine            1.6          4           1
 S serine              4.8         12           2
 T threonine           6.5         16           1
 V valine              6.5         16           2
 W tryptophan          3.2          8           1
 Y tyrosine            2.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetraspanin 19 
CD82                  0.197   CD82 antigen isoform 1 
CD82                  0.164   CD82 antigen isoform 2 
CD37                  0.162   CD37 antigen isoform A 
CD63                  0.105   CD63 antigen isoform A 
CD37                  0.100   CD37 antigen isoform B 
CD151                 0.100   CD151 antigen 
CD151                 0.100   CD151 antigen 
CD151                 0.100   CD151 antigen 
CD151                 0.100   CD151 antigen 
TSPAN7                0.098   tetraspanin 7 
CD63                  0.092   CD63 antigen isoform B 
TSPAN15               0.092   transmembrane 4 superfamily member 15 
TSPAN6                0.092   transmembrane 4 superfamily member 6 
TSPAN4                0.086   tetraspanin 4 isoform a 
TSPAN4                0.086   tetraspanin 4 isoform a 
TSPAN4                0.086   tetraspanin 4 isoform a 
TSPAN4                0.086   tetraspanin 4 isoform a 
TSPAN4                0.086   tetraspanin 4 isoform a 
TSPAN4                0.086   tetraspanin 4 isoform a 
CD53                  0.082   CD53 antigen 
CD53                  0.082   CD53 antigen 
TSPAN9                0.080   tetraspanin 9 
TSPAN1                0.078   tetraspan 1 
TSPAN16               0.078   transmembrane 4 superfamily member 16 
TSPAN11               0.076   tetraspanin 11 
TSPAN3                0.072   transmembrane 4 superfamily member 8 isoform 1 
TSPAN33               0.066   tetraspanin 33 
TSPAN5                0.064   transmembrane 4 superfamily member 9 
TSPAN12               0.059   transmembrane 4 superfamily member 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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