Guide to the Human Genome
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Name: TSPAN15 Sequence: fasta or formatted (294aa) NCBI GI: 6912530
Description:

transmembrane 4 superfamily member 15

Referenced in:

Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         16           2
 C cysteine            4.4         13           2
 D aspartate           5.4         16           2
 E glutamate           4.1         12           1
 F phenylalanine       5.1         15           1
 G glycine             7.8         23           2
 H histidine           0.7          2           1
 I isoleucine          9.2         27           2
 K lysine              3.7         11           2
 L leucine            11.9         35           2
 M methionine          3.4         10           1
 N asparagine          4.1         12           1
 P proline             3.1          9           1
 Q glutamine           2.7          8           1
 R arginine            4.4         13           2
 S serine              4.4         13           1
 T threonine           5.1         15           2
 V valine              7.8         23           2
 W tryptophan          1.4          4           1
 Y tyrosine            5.8         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane 4 superfamily member 15 
TSPAN33               0.296   tetraspanin 33 
TSPAN5                0.247   transmembrane 4 superfamily member 9 
TSPAN17               0.246   transmembrane 4 superfamily member 17 isoform b [Hom...
TSPAN17               0.240   transmembrane 4 superfamily member 17 isoform a [Hom...
TSPAN17               0.239   transmembrane 4 superfamily member 17 isoform c [Hom...
TSPAN14               0.228   tetraspanin 14 isoform 1 
TSPAN10               0.170   tetraspanin 10 
TSPAN7                0.135   tetraspanin 7 
TSPAN9                0.133   tetraspanin 9 
CD63                  0.131   CD63 antigen isoform A 
TSPAN11               0.130   tetraspanin 11 
TSPAN6                0.130   transmembrane 4 superfamily member 6 
CD151                 0.125   CD151 antigen 
CD151                 0.125   CD151 antigen 
CD151                 0.125   CD151 antigen 
CD151                 0.125   CD151 antigen 
CD63                  0.125   CD63 antigen isoform B 
TSPAN4                0.104   tetraspanin 4 isoform a 
TSPAN4                0.104   tetraspanin 4 isoform a 
TSPAN4                0.104   tetraspanin 4 isoform a 
TSPAN4                0.104   tetraspanin 4 isoform a 
TSPAN4                0.104   tetraspanin 4 isoform a 
TSPAN4                0.104   tetraspanin 4 isoform a 
TSPAN1                0.099   tetraspan 1 
TSPAN14               0.092   tetraspanin 14 isoform 2 
CD53                  0.087   CD53 antigen 
CD53                  0.087   CD53 antigen 
TSPAN3                0.085   transmembrane 4 superfamily member 8 isoform 1 
CD82                  0.083   CD82 antigen isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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