Guide to the Human Genome
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Name: CCDC129 Sequence: fasta or formatted (1044aa) NCBI GI: 154937346
Description:

coiled-coil domain containing 129

Referenced in:

Coiled-Coil Proteins
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         67           2
 C cysteine            3.2         33           2
 D aspartate           4.4         46           2
 E glutamate           9.2         96           3
 F phenylalanine       3.1         32           2
 G glycine             5.7         59           2
 H histidine           3.5         37           3
 I isoleucine          3.1         32           1
 K lysine              4.0         42           1
 L leucine             9.1         95           2
 M methionine          3.0         31           2
 N asparagine          3.1         32           1
 P proline             7.3         76           2
 Q glutamine           6.7         70           2
 R arginine            4.8         50           3
 S serine             11.1        116           3
 T threonine           5.8         61           3
 V valine              4.5         47           1
 W tryptophan          1.0         10           1
 Y tyrosine            1.1         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 129 
SSFA2                 0.047   sperm specific antigen 2 isoform 1 
SSFA2                 0.047   sperm specific antigen 2 isoform 2 
KIAA0748              0.019   hypothetical protein LOC9840 
KIAA0748              0.019   hypothetical protein LOC9840 
MUC12                 0.009   PREDICTED: mucin 12 
SPAG9                 0.007   sperm associated antigen 9 isoform 1 
SPAG9                 0.007   sperm associated antigen 9 isoform 3 
PRUNE2                0.006   prune homolog 2 
DNAH9                 0.006   dynein, axonemal, heavy chain 9 isoform 2 
DMP1                  0.005   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.005   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
MUC12                 0.005   PREDICTED: mucin 12 
MYH11                 0.005   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.005   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.005   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.005   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
NIN                   0.005   ninein isoform 4 
NIN                   0.005   ninein isoform 5 
NIN                   0.005   ninein isoform 1 
NIN                   0.005   ninein isoform 2 
MYH9                  0.005   myosin, heavy polypeptide 9, non-muscle 
MAPK8IP3              0.005   mitogen-activated protein kinase 8 interacting prote...
MAPK8IP3              0.005   mitogen-activated protein kinase 8 interacting prote...
CEP110                0.005   centrosomal protein 110kDa 
ZFYVE20               0.005   FYVE-finger-containing Rab5 effector protein rabenos...
RUNX1T1               0.005   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.005   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.005   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.005   acute myelogenous leukemia 1 translocation 1 protein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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