Guide to the Human Genome
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Name: ZFYVE20 Sequence: fasta or formatted (784aa) NCBI GI: 70980547
Description:

FYVE-finger-containing Rab5 effector protein rabenosyn-5

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         49           2
 C cysteine            1.8         14           2
 D aspartate           5.9         46           3
 E glutamate          11.4         89           4
 F phenylalanine       2.6         20           1
 G glycine             4.8         38           2
 H histidine           2.6         20           2
 I isoleucine          3.7         29           2
 K lysine              6.0         47           3
 L leucine            10.3         81           3
 M methionine          1.9         15           1
 N asparagine          2.7         21           1
 P proline             6.8         53           3
 Q glutamine           6.1         48           3
 R arginine            7.7         60           2
 S serine              9.1         71           2
 T threonine           4.0         31           2
 V valine              4.2         33           2
 W tryptophan          0.5          4           1
 Y tyrosine            1.9         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FYVE-finger-containing Rab5 effector protein rabenos... 
CNTROB                0.034   centrobin, centrosomal BRCA2 interacting protein is...
CNTROB                0.034   centrobin, centrosomal BRCA2 interacting protein iso...
CDC2L1                0.024   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.021   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.021   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.021   cell division cycle 2-like 1 (PITSLRE proteins) isof...
BZRAP1                0.021   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.021   peripheral benzodiazepine receptor-associated prote...
CDC2L2                0.020   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.020   cell division cycle 2-like 2 isoform 1 
TCHH                  0.019   trichohyalin 
SFRS17A               0.019   DNA segment on chromosome X and Y (unique) 155 expre...
EEA1                  0.019   early endosome antigen 1, 162kD 
PIKFYVE               0.018   phosphatidylinositol-3-phosphate 5-kinase type III ...
EIF5B                 0.018   eukaryotic translation initiation factor 5B 
GOLGA6C               0.018   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
INCENP                0.018   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.018   inner centromere protein antigens 135/155kDa isofor...
WDFY3                 0.017   WD repeat and FYVE domain containing 3 isoform 3 [Ho...
WDFY3                 0.017   WD repeat and FYVE domain containing 3 isoform 1 [Ho...
GOLGA6                0.017   golgi autoantigen, golgin subfamily a, 6 
GIGYF2                0.017   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.017   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.017   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.017   GRB10 interacting GYF protein 2 isoform b 
AKAP13                0.017   A-kinase anchor protein 13 isoform 1 
AKAP13                0.017   A-kinase anchor protein 13 isoform 3 
AKAP13                0.017   A-kinase anchor protein 13 isoform 2 
ZFYVE9                0.016   zinc finger, FYVE domain containing 9 isoform 1 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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