Search of human proteins with 153285408

Search of human proteins with 153285408

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|153285408 microsomal triglyceride transfer protein large
subunit precursor [Homo sapiens]
         (894 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|153285408 microsomal triglyceride transfer protein large subu...  1735   0.0  
gi|17865632 mitochondrial tumor suppressor 1 isoform 5 [Homo sap...    32   3.4  
gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo sap...    32   3.4  
gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo sap...    32   3.4  
gi|50348626 mitochondrial tumor suppressor 1 isoform 4 [Homo sap...    32   3.4  
gi|82880656 coiled-coil domain containing 46 isoform a [Homo sap...    32   3.4  
gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]                  31   4.5  
gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]                  31   4.5  
gi|119943086 Tax1 (human T-cell leukemia virus type I) binding p...    30   7.7  
gi|21361682 Tax1 (human T-cell leukemia virus type I) binding pr...    30   7.7  

>gi|153285408 microsomal triglyceride transfer protein large subunit
           precursor [Homo sapiens]
          Length = 894

 Score = 1735 bits (4493), Expect = 0.0
 Identities = 894/894 (100%), Positives = 894/894 (100%)

Query: 1   MILLAVLFLCFISSYSASVKGHTTGLSLNNDRLYKLTYSTEVLLDRGKGKLQDSVGYRIS 60
           MILLAVLFLCFISSYSASVKGHTTGLSLNNDRLYKLTYSTEVLLDRGKGKLQDSVGYRIS
Sbjct: 1   MILLAVLFLCFISSYSASVKGHTTGLSLNNDRLYKLTYSTEVLLDRGKGKLQDSVGYRIS 60

Query: 61  SNVDVALLWRNPDGDDDQLIQITMKDVNVENVNQQRGEKSIFKGKSPSKIMGKENLEALQ 120
           SNVDVALLWRNPDGDDDQLIQITMKDVNVENVNQQRGEKSIFKGKSPSKIMGKENLEALQ
Sbjct: 61  SNVDVALLWRNPDGDDDQLIQITMKDVNVENVNQQRGEKSIFKGKSPSKIMGKENLEALQ 120

Query: 121 RPTLLHLIHGKVKEFYSYQNEAVAIENIKRGLASLFQTQLSSGTTNEVDISGNCKVTYQA 180
           RPTLLHLIHGKVKEFYSYQNEAVAIENIKRGLASLFQTQLSSGTTNEVDISGNCKVTYQA
Sbjct: 121 RPTLLHLIHGKVKEFYSYQNEAVAIENIKRGLASLFQTQLSSGTTNEVDISGNCKVTYQA 180

Query: 181 HQDKVIKIKALDSCKIARSGFTTPNQVLGVSSKATSVTTYKIEDSFVIAVLAEETHNFGL 240
           HQDKVIKIKALDSCKIARSGFTTPNQVLGVSSKATSVTTYKIEDSFVIAVLAEETHNFGL
Sbjct: 181 HQDKVIKIKALDSCKIARSGFTTPNQVLGVSSKATSVTTYKIEDSFVIAVLAEETHNFGL 240

Query: 241 NFLQTIKGKIVSKQKLELKTTEAGPRLMSGKQAAAIIKAVDSKYTAIPIVGQVFQSHCKG 300
           NFLQTIKGKIVSKQKLELKTTEAGPRLMSGKQAAAIIKAVDSKYTAIPIVGQVFQSHCKG
Sbjct: 241 NFLQTIKGKIVSKQKLELKTTEAGPRLMSGKQAAAIIKAVDSKYTAIPIVGQVFQSHCKG 300

Query: 301 CPSLSELWRSTRKYLQPDNLSKAEAVRNFLAFIQHLRTAKKEEILQILKMENKEVLPQLV 360
           CPSLSELWRSTRKYLQPDNLSKAEAVRNFLAFIQHLRTAKKEEILQILKMENKEVLPQLV
Sbjct: 301 CPSLSELWRSTRKYLQPDNLSKAEAVRNFLAFIQHLRTAKKEEILQILKMENKEVLPQLV 360

Query: 361 DAVTSAQTSDSLEAILDFLDFKSDSSIILQERFLYACGFASHPNEELLRALISKFKGSIG 420
           DAVTSAQTSDSLEAILDFLDFKSDSSIILQERFLYACGFASHPNEELLRALISKFKGSIG
Sbjct: 361 DAVTSAQTSDSLEAILDFLDFKSDSSIILQERFLYACGFASHPNEELLRALISKFKGSIG 420

Query: 421 SSDIRETVMIITGTLVRKLCQNEGCKLKAVVEAKKLILGGLEKAEKKEDTRMYLLALKNA 480
           SSDIRETVMIITGTLVRKLCQNEGCKLKAVVEAKKLILGGLEKAEKKEDTRMYLLALKNA
Sbjct: 421 SSDIRETVMIITGTLVRKLCQNEGCKLKAVVEAKKLILGGLEKAEKKEDTRMYLLALKNA 480

Query: 481 LLPEGIPSLLKYAEAGEGPISHLATTALQRYDLPFITDEVKKTLNRIYHQNRKVHEKTVR 540
           LLPEGIPSLLKYAEAGEGPISHLATTALQRYDLPFITDEVKKTLNRIYHQNRKVHEKTVR
Sbjct: 481 LLPEGIPSLLKYAEAGEGPISHLATTALQRYDLPFITDEVKKTLNRIYHQNRKVHEKTVR 540

Query: 541 TAAAAIILNNNPSYMDVKNILLSIGELPQEMNKYMLAIVQDILRFEMPASKIVRRVLKEM 600
           TAAAAIILNNNPSYMDVKNILLSIGELPQEMNKYMLAIVQDILRFEMPASKIVRRVLKEM
Sbjct: 541 TAAAAIILNNNPSYMDVKNILLSIGELPQEMNKYMLAIVQDILRFEMPASKIVRRVLKEM 600

Query: 601 VAHNYDRFSRSGSSSAYTGYIERSPRSASTYSLDILYSGSGILRRSNLNIFQYIGKAGLH 660
           VAHNYDRFSRSGSSSAYTGYIERSPRSASTYSLDILYSGSGILRRSNLNIFQYIGKAGLH
Sbjct: 601 VAHNYDRFSRSGSSSAYTGYIERSPRSASTYSLDILYSGSGILRRSNLNIFQYIGKAGLH 660

Query: 661 GSQVVIEAQGLEALIAATPDEGEENLDSYAGMSAILFDVQLRPVTFFNGYSDLMSKMLSA 720
           GSQVVIEAQGLEALIAATPDEGEENLDSYAGMSAILFDVQLRPVTFFNGYSDLMSKMLSA
Sbjct: 661 GSQVVIEAQGLEALIAATPDEGEENLDSYAGMSAILFDVQLRPVTFFNGYSDLMSKMLSA 720

Query: 721 SGDPISVVKGLILLIDHSQELQLQSGLKANIEVQGGLAIDISGAMEFSLWYRESKTRVKN 780
           SGDPISVVKGLILLIDHSQELQLQSGLKANIEVQGGLAIDISGAMEFSLWYRESKTRVKN
Sbjct: 721 SGDPISVVKGLILLIDHSQELQLQSGLKANIEVQGGLAIDISGAMEFSLWYRESKTRVKN 780

Query: 781 RVTVVITTDITVDSSFVKAGLETSTETEAGLEFISTVQFSQYPFLVCMQMDKDEAPFRQF 840
           RVTVVITTDITVDSSFVKAGLETSTETEAGLEFISTVQFSQYPFLVCMQMDKDEAPFRQF
Sbjct: 781 RVTVVITTDITVDSSFVKAGLETSTETEAGLEFISTVQFSQYPFLVCMQMDKDEAPFRQF 840

Query: 841 EKKYERLSTGRGYVSQKRKESVLAGCEFPLHQENSEMCKVVFAPQPDSTSSGWF 894
           EKKYERLSTGRGYVSQKRKESVLAGCEFPLHQENSEMCKVVFAPQPDSTSSGWF
Sbjct: 841 EKKYERLSTGRGYVSQKRKESVLAGCEFPLHQENSEMCKVVFAPQPDSTSSGWF 894


>gi|17865632 mitochondrial tumor suppressor 1 isoform 5 [Homo
           sapiens]
          Length = 436

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 32/138 (23%), Positives = 67/138 (48%), Gaps = 17/138 (12%)

Query: 508 LQRYDLPFITDEVKKTLNRIYHQNRKVHEKTVRTAAAAIILNNNPSYMD-VKNILLSIGE 566
           L+   + ++  E++     +  +N K+H++ ++      +++NN + +D +K       E
Sbjct: 294 LKNPQIMYLEQELESLKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQQENEE 353

Query: 567 LPQEMNKYML---------AIVQDILRFEMPASKIVRRVLKEMV--AHNYDRFS--RSGS 613
           L   M+K+M          A++Q+ L  E   +K +    +E++   HN D  S  RS +
Sbjct: 354 LKARMDKHMAISRQLSTEQAVLQESLEKESKVNKRLSMENEELLWKLHNGDLCSPKRSPT 413

Query: 614 SSAYTGYIERSPRSASTY 631
           SSA      +SPR++ ++
Sbjct: 414 SSAIP---LQSPRNSGSF 428


>gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo sapiens]
          Length = 1270

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 32/138 (23%), Positives = 67/138 (48%), Gaps = 17/138 (12%)

Query: 508  LQRYDLPFITDEVKKTLNRIYHQNRKVHEKTVRTAAAAIILNNNPSYMD-VKNILLSIGE 566
            L+   + ++  E++     +  +N K+H++ ++      +++NN + +D +K       E
Sbjct: 1128 LKNPQIMYLEQELESLKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQQENEE 1187

Query: 567  LPQEMNKYML---------AIVQDILRFEMPASKIVRRVLKEMV--AHNYDRFS--RSGS 613
            L   M+K+M          A++Q+ L  E   +K +    +E++   HN D  S  RS +
Sbjct: 1188 LKARMDKHMAISRQLSTEQAVLQESLEKESKVNKRLSMENEELLWKLHNGDLCSPKRSPT 1247

Query: 614  SSAYTGYIERSPRSASTY 631
            SSA      +SPR++ ++
Sbjct: 1248 SSAIP---LQSPRNSGSF 1262


>gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo sapiens]
          Length = 1216

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 32/138 (23%), Positives = 67/138 (48%), Gaps = 17/138 (12%)

Query: 508  LQRYDLPFITDEVKKTLNRIYHQNRKVHEKTVRTAAAAIILNNNPSYMD-VKNILLSIGE 566
            L+   + ++  E++     +  +N K+H++ ++      +++NN + +D +K       E
Sbjct: 1074 LKNPQIMYLEQELESLKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQQENEE 1133

Query: 567  LPQEMNKYML---------AIVQDILRFEMPASKIVRRVLKEMV--AHNYDRFS--RSGS 613
            L   M+K+M          A++Q+ L  E   +K +    +E++   HN D  S  RS +
Sbjct: 1134 LKARMDKHMAISRQLSTEQAVLQESLEKESKVNKRLSMENEELLWKLHNGDLCSPKRSPT 1193

Query: 614  SSAYTGYIERSPRSASTY 631
            SSA      +SPR++ ++
Sbjct: 1194 SSAIP---LQSPRNSGSF 1208


>gi|50348626 mitochondrial tumor suppressor 1 isoform 4 [Homo
           sapiens]
          Length = 517

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 32/138 (23%), Positives = 67/138 (48%), Gaps = 17/138 (12%)

Query: 508 LQRYDLPFITDEVKKTLNRIYHQNRKVHEKTVRTAAAAIILNNNPSYMD-VKNILLSIGE 566
           L+   + ++  E++     +  +N K+H++ ++      +++NN + +D +K       E
Sbjct: 375 LKNPQIMYLEQELESLKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQQENEE 434

Query: 567 LPQEMNKYML---------AIVQDILRFEMPASKIVRRVLKEMV--AHNYDRFS--RSGS 613
           L   M+K+M          A++Q+ L  E   +K +    +E++   HN D  S  RS +
Sbjct: 435 LKARMDKHMAISRQLSTEQAVLQESLEKESKVNKRLSMENEELLWKLHNGDLCSPKRSPT 494

Query: 614 SSAYTGYIERSPRSASTY 631
           SSA      +SPR++ ++
Sbjct: 495 SSAIP---LQSPRNSGSF 509


>gi|82880656 coiled-coil domain containing 46 isoform a [Homo
           sapiens]
          Length = 955

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 21/184 (11%)

Query: 181 HQDKVIKIKALDSCKIARSGFTTPNQVLGVSSKATSVTTYKIEDSFVIAVLAEETHNFGL 240
           H++++ + K  D+  IA        QV  +  +  +V + + +    + +L EE      
Sbjct: 708 HENQIQEFKKRDAQVIA----DMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRAT 763

Query: 241 NFLQTIKGKIVS---KQKLELKTTEAGPRLMSGKQAAAIIKAVDSKYTAIPIVGQVFQSH 297
              + +  K+ +   K K+ELK T A    M+ ++A + +K ++ +YT         Q  
Sbjct: 764 REHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYT---------QKL 814

Query: 298 CKGCPSLSELWRSTRKYLQPDNLSKAEAVRNFLAFIQHLRTAKKEEILQILKMENKEVLP 357
            K    ++EL ++T   L+ +N  +  A    L   Q +R   ++E  Q+++ +N + + 
Sbjct: 815 AKSSQIIAEL-QTTISSLKEENSQQQLAAERRL---QDVRQKFEDEKKQLIR-DNDQAIK 869

Query: 358 QLVD 361
            L D
Sbjct: 870 VLQD 873


>gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]
          Length = 1726

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)

Query: 357  PQLVDAVTSAQTSDSLEAILDFLDFKSDSSIILQERFLYACGFASHPNEELLRALISKFK 416
            PQ+ + V+  Q +  +EA+  +L  K         R   AC  A    +  L  L+S+F 
Sbjct: 1299 PQIEEEVSLTQKNSPVEAVFSYLTGK---------RISEACSLAQQSGDHRLALLLSQF- 1348

Query: 417  GSIGSSDIRE 426
              +GS  +RE
Sbjct: 1349 --VGSQSVRE 1356


>gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]
          Length = 1800

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)

Query: 357  PQLVDAVTSAQTSDSLEAILDFLDFKSDSSIILQERFLYACGFASHPNEELLRALISKFK 416
            PQ+ + V+  Q +  +EA+  +L  K         R   AC  A    +  L  L+S+F 
Sbjct: 1299 PQIEEEVSLTQKNSPVEAVFSYLTGK---------RISEACSLAQQSGDHRLALLLSQF- 1348

Query: 417  GSIGSSDIRE 426
              +GS  +RE
Sbjct: 1349 --VGSQSVRE 1356


>gi|119943086 Tax1 (human T-cell leukemia virus type I) binding
           protein 1 isoform b [Homo sapiens]
          Length = 747

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 29/222 (13%)

Query: 343 EILQILKMENKEVLPQLVDAVTSAQ---------TSDSLEAILDFLDFKSDSSIILQERF 393
           E+ Q LKMEN+E   +  DA + A          T  ++E   +    K        ER 
Sbjct: 208 EVTQSLKMENEEFKKRFSDATSKAHQLEEDIVSVTHKAIEKETELDSLKDKLKKAQHERE 267

Query: 394 LYACGFASHPNEELLRALISKFKGSIGSSDIRETVMIITGTLVRKLCQNEGCKLKAVVEA 453
              C   +  +E+ L      +K  + +++I  T ++     ++ L  N+    ++V+  
Sbjct: 268 QLECQLKTEKDEKEL------YKVHLKNTEIENTKLMSEVQTLKNLDGNK----ESVITH 317

Query: 454 KKLILGGLE--KAEKKEDTRMYLLALKN----ALLPEGIPSLLKYAEAGEGPISHLATTA 507
            K  +G L+   AEK+   R +LL   +      L E    L K  E  +     +   A
Sbjct: 318 FKEEIGRLQLCLAEKENLQRTFLLTTSSKEDTCFLKE---QLRKAEEQVQATRQEVVFLA 374

Query: 508 LQRYDLPFITDEVKKTLNRIYHQNRKVHEKTVRTAAAAIILN 549
            +  D   + D     L+    +N KV +K +  A A + LN
Sbjct: 375 KELSDAVNVRDRTMADLHTARLENEKV-KKQLADAVAELKLN 415


>gi|21361682 Tax1 (human T-cell leukemia virus type I) binding
           protein 1 isoform a [Homo sapiens]
          Length = 789

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 29/222 (13%)

Query: 343 EILQILKMENKEVLPQLVDAVTSAQ---------TSDSLEAILDFLDFKSDSSIILQERF 393
           E+ Q LKMEN+E   +  DA + A          T  ++E   +    K        ER 
Sbjct: 208 EVTQSLKMENEEFKKRFSDATSKAHQLEEDIVSVTHKAIEKETELDSLKDKLKKAQHERE 267

Query: 394 LYACGFASHPNEELLRALISKFKGSIGSSDIRETVMIITGTLVRKLCQNEGCKLKAVVEA 453
              C   +  +E+ L      +K  + +++I  T ++     ++ L  N+    ++V+  
Sbjct: 268 QLECQLKTEKDEKEL------YKVHLKNTEIENTKLMSEVQTLKNLDGNK----ESVITH 317

Query: 454 KKLILGGLE--KAEKKEDTRMYLLALKN----ALLPEGIPSLLKYAEAGEGPISHLATTA 507
            K  +G L+   AEK+   R +LL   +      L E    L K  E  +     +   A
Sbjct: 318 FKEEIGRLQLCLAEKENLQRTFLLTTSSKEDTCFLKE---QLRKAEEQVQATRQEVVFLA 374

Query: 508 LQRYDLPFITDEVKKTLNRIYHQNRKVHEKTVRTAAAAIILN 549
            +  D   + D     L+    +N KV +K +  A A + LN
Sbjct: 375 KELSDAVNVRDRTMADLHTARLENEKV-KKQLADAVAELKLN 415


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,921,982
Number of Sequences: 37866
Number of extensions: 1168392
Number of successful extensions: 3064
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3059
Number of HSP's gapped (non-prelim): 10
length of query: 894
length of database: 18,247,518
effective HSP length: 111
effective length of query: 783
effective length of database: 14,044,392
effective search space: 10996758936
effective search space used: 10996758936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.