Guide to the Human Genome
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Name: TAX1BP1 Sequence: fasta or formatted (747aa) NCBI GI: 119943086
Description:

Tax1 (human T-cell leukemia virus type I) binding protein 1 isoform b

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt prot [789aa] Tax1 (human T-cell leukemia virus type I) binding protein 1 isofo...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         46           2
 C cysteine            2.3         17           1
 D aspartate           6.6         49           2
 E glutamate          11.8         88           2
 F phenylalanine       4.0         30           1
 G glycine             2.9         22           1
 H histidine           3.1         23           1
 I isoleucine          2.1         16           1
 K lysine             10.2         76           2
 L leucine             9.2         69           2
 M methionine          2.1         16           1
 N asparagine          4.7         35           4
 P proline             4.0         30           2
 Q glutamine           6.2         46           2
 R arginine            3.7         28           2
 S serine              5.2         39           2
 T threonine           5.9         44           2
 V valine              6.6         49           2
 W tryptophan          0.8          6           1
 Y tyrosine            2.4         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Tax1 (human T-cell leukemia virus type I) binding p... 
TAX1BP1               0.987   Tax1 (human T-cell leukemia virus type I) binding pr...
CALCOCO1              0.171   coiled-coil transcriptional coactivator isoform 1 [H...
CALCOCO1              0.115   coiled-coil transcriptional coactivator isoform 2 [...
CALCOCO2              0.091   calcium binding and coiled-coil domain 2 
CENPF                 0.044   centromere protein F 
SYCP1                 0.043   synaptonemal complex protein 1 
UACA                  0.043   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.043   uveal autoantigen with coiled-coil domains and ankyr...
GOLGB1                0.041   golgi autoantigen, golgin subfamily b, macrogolgin ...
AKAP9                 0.040   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.040   A-kinase anchor protein 9 isoform 3 
CENPE                 0.040   centromere protein E 
MYH9                  0.038   myosin, heavy polypeptide 9, non-muscle 
CCDC147               0.038   coiled-coil domain containing 147 
MYH3                  0.038   myosin, heavy chain 3, skeletal muscle, embryonic [H...
GOLGA4                0.038   golgi autoantigen, golgin subfamily a, 4 
C14orf145             0.038   hypothetical protein LOC145508 
ERC1                  0.037   RAB6-interacting protein 2 isoform epsilon 
MYH13                 0.037   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH8                  0.037   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH4                  0.037   myosin, heavy polypeptide 4, skeletal muscle 
DSP                   0.037   desmoplakin isoform I 
ROCK2                 0.036   Rho-associated, coiled-coil containing protein kinas...
MYH6                  0.036   myosin heavy chain 6 
CEP110                0.036   centrosomal protein 110kDa 
ERC1                  0.036   RAB6-interacting protein 2 isoform delta 
MYH2                  0.036   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.036   myosin, heavy chain 2, skeletal muscle, adult [Homo...
HOOK3                 0.036   golgi-associated microtubule-binding protein HOOK3 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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