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Search of human proteins with 15055539
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15055539 ribosomal protein S2 [Homo sapiens]
(293 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15055539 ribosomal protein S2 [Homo sapiens] 595 e-170
gi|169169007 PREDICTED: similar to hCG1645245 [Homo sapiens] 105 4e-23
gi|239748850 PREDICTED: similar to hCG1645245 [Homo sapiens] 105 4e-23
gi|239742877 PREDICTED: similar to hCG1645245 [Homo sapiens] 105 4e-23
gi|28875797 small protein rich in arginine and glycine [Homo sap... 52 5e-07
gi|55956788 nucleolin [Homo sapiens] 51 1e-06
gi|12056465 fibrillarin [Homo sapiens] 50 3e-06
gi|109452587 family with sequence similarity 98, member B isofor... 50 3e-06
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 49 4e-06
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 49 4e-06
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo... 49 4e-06
gi|110681708 zinc finger protein 579 [Homo sapiens] 46 3e-05
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 45 6e-05
gi|55956899 keratin 9 [Homo sapiens] 45 1e-04
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 44 2e-04
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 44 2e-04
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 44 2e-04
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 44 2e-04
gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens] 44 2e-04
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 44 2e-04
gi|9966841 cell death regulator aven [Homo sapiens] 44 2e-04
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 44 2e-04
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 44 2e-04
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 44 2e-04
gi|119395750 keratin 1 [Homo sapiens] 44 2e-04
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 44 2e-04
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 43 3e-04
gi|194018511 keratin 77 [Homo sapiens] 43 4e-04
gi|4503119 cancer/testis antigen 1B [Homo sapiens] 42 5e-04
gi|4502565 calpain, small subunit 1 [Homo sapiens] 42 5e-04
>gi|15055539 ribosomal protein S2 [Homo sapiens]
Length = 293
Score = 595 bits (1535), Expect = e-170
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MADDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEW 60
MADDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEW
Sbjct: 1 MADDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEW 60
Query: 61 MPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQ 120
MPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQ
Sbjct: 61 MPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQ 120
Query: 121 RTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTV 180
RTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTV
Sbjct: 121 RTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTV 180
Query: 181 PCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKAT 240
PCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKAT
Sbjct: 181 PCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKAT 240
Query: 241 FDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT 293
FDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT
Sbjct: 241 FDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT 293
>gi|169169007 PREDICTED: similar to hCG1645245 [Homo sapiens]
Length = 169
Score = 105 bits (263), Expect = 4e-23
Identities = 64/136 (47%), Positives = 81/136 (59%), Gaps = 6/136 (4%)
Query: 23 GGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWMPVTKLGRLVKDMKIKSLEEIY 82
G G +G +G+G + A DKEW +TK VKDMKIKSL+ +Y
Sbjct: 36 GARSGEAAAGFQGQGLAPALSK-----AASESPPDKEWCSITKSPCQVKDMKIKSLK-VY 89
Query: 83 LFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVK 142
LFSL IKE E+ DF LG LKD+VLK+M VQKQ +AG+R RFK V I D N +V LGV+
Sbjct: 90 LFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQKQPKAGRRIRFKVIVTIRDCNDNVSLGVE 149
Query: 143 CSKEVATAIRGAIILA 158
KE+ A+ IL+
Sbjct: 150 WPKELLIAVCRTNILS 165
>gi|239748850 PREDICTED: similar to hCG1645245 [Homo sapiens]
Length = 169
Score = 105 bits (263), Expect = 4e-23
Identities = 64/136 (47%), Positives = 81/136 (59%), Gaps = 6/136 (4%)
Query: 23 GGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWMPVTKLGRLVKDMKIKSLEEIY 82
G G +G +G+G + A DKEW +TK VKDMKIKSL+ +Y
Sbjct: 36 GARSGEAAAGFQGQGLAPALSK-----AASESPPDKEWCSITKSPCQVKDMKIKSLK-VY 89
Query: 83 LFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVK 142
LFSL IKE E+ DF LG LKD+VLK+M VQKQ +AG+R RFK V I D N +V LGV+
Sbjct: 90 LFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQKQPKAGRRIRFKVIVTIRDCNDNVSLGVE 149
Query: 143 CSKEVATAIRGAIILA 158
KE+ A+ IL+
Sbjct: 150 WPKELLIAVCRTNILS 165
>gi|239742877 PREDICTED: similar to hCG1645245 [Homo sapiens]
Length = 169
Score = 105 bits (263), Expect = 4e-23
Identities = 64/136 (47%), Positives = 81/136 (59%), Gaps = 6/136 (4%)
Query: 23 GGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWMPVTKLGRLVKDMKIKSLEEIY 82
G G +G +G+G + A DKEW +TK VKDMKIKSL+ +Y
Sbjct: 36 GARSGEAAAGFQGQGLAPALSK-----AASESPPDKEWCSITKSPCQVKDMKIKSLK-VY 89
Query: 83 LFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVK 142
LFSL IKE E+ DF LG LKD+VLK+M VQKQ +AG+R RFK V I D N +V LGV+
Sbjct: 90 LFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQKQPKAGRRIRFKVIVTIRDCNDNVSLGVE 149
Query: 143 CSKEVATAIRGAIILA 158
KE+ A+ IL+
Sbjct: 150 WPKELLIAVCRTNILS 165
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 52.4 bits (124), Expect = 5e-07
Identities = 33/62 (53%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
Query: 6 GAAGGPGGPGGPGMGN----RGGFRGGFGSGIRGRGRG----RGRGRGRGRGARGGKAED 57
G G GGPG G+G RGG GG G G+ GRGRG RGRGRGRGRGA
Sbjct: 154 GGVRGRGGPGRGGLGRGAMGRGGI-GGRGRGMIGRGRGGFGGRGRGRGRGRGALARPVLT 212
Query: 58 KE 59
KE
Sbjct: 213 KE 214
Score = 37.4 bits (85), Expect = 0.016
Identities = 25/53 (47%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
Query: 17 PGMG-NRGGFRG-------GFGSGIRGRGRGRGRGR---GRGRGARGGKAEDK 58
P MG RGG RG G G G GRG GRGR GRGRG GG+ +
Sbjct: 147 PRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGR 199
Score = 29.6 bits (65), Expect = 3.3
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 15 GGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGR-GRGARGGK 54
GG + R G R G G G GRG G GRG GRG GG+
Sbjct: 141 GGRAVAPRMGLRRGGVRGRGGPGRG-GLGRGAMGRGGIGGR 180
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 50.8 bits (120), Expect = 1e-06
Identities = 32/60 (53%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWMPVTK 65
G GG GG G G G RGG RGG G G GRGRG GRG RG RGG + K TK
Sbjct: 651 GGFGGRGGGRG-GFGGRGGGRGGRG-GFGGRGRGGFGGRGGFRGGRGGGGDHKPQGKKTK 708
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 49.7 bits (117), Expect = 3e-06
Identities = 28/50 (56%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 9 GGPGGPGG----PGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGK 54
GG GG GG G G RGGF GG G G RGRGRG G G G G GG+
Sbjct: 10 GGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGR 59
Score = 48.9 bits (115), Expect = 5e-06
Identities = 33/69 (47%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 4 DAGAAGGPGGPGGPGMGNRGGFRG----GFGSGIRGRGRGRGRG-------RGRGRGARG 52
D G GG GG GG G G GGFRG G G G G G GRG G RGRGRG +
Sbjct: 20 DRGGRGGRGGFGG-GRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKR 78
Query: 53 GKAEDKEWM 61
G K M
Sbjct: 79 GNQSGKNVM 87
Score = 48.5 bits (114), Expect = 7e-06
Identities = 31/53 (58%), Positives = 31/53 (58%), Gaps = 11/53 (20%)
Query: 11 PG-GPGGPGMGNRGGF--------RGGFGSGIRGRGRG-RGRGRGRGRGARGG 53
PG P G G G RGGF RGGFG G RGRG G RGRGRG G G GG
Sbjct: 3 PGFSPRGGGFGGRGGFGDRGGRGGRGGFGGG-RGRGGGFRGRGRGGGGGGGGG 54
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 49.7 bits (117), Expect = 3e-06
Identities = 26/49 (53%), Positives = 28/49 (57%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGK 54
G GG GG GG G G GG RGG+G G G G G G G G G G GG+
Sbjct: 336 GGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGR 384
Score = 45.4 bits (106), Expect = 6e-05
Identities = 25/49 (51%), Positives = 27/49 (55%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGK 54
G GG GG GG G G G GG G G G G G GRG +GRG GG+
Sbjct: 348 GGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGR 396
Score = 45.4 bits (106), Expect = 6e-05
Identities = 28/58 (48%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 6 GAAGGPGGPGGPGMGNRGGF--------RGGFG--SGIRGRGRGRGRGRGRGRGARGG 53
G GG GG GG G G RGGF RGG+G G GRG G G G G G GG
Sbjct: 368 GGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGG 425
Score = 44.7 bits (104), Expect = 1e-04
Identities = 24/49 (48%), Positives = 26/49 (53%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGK 54
G GG G GG G G GG GG G +GRG GRG GRG GG+
Sbjct: 360 GGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGR 408
Score = 44.3 bits (103), Expect = 1e-04
Identities = 25/48 (52%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G GG G GG G G RGG+ GG G G G G G G G G G RGG
Sbjct: 340 GGGGGGGRGGGGGGGGRGGWGGG-GGGWGGGGGGGGGWGGGGGGGRGG 386
Score = 42.7 bits (99), Expect = 4e-04
Identities = 24/51 (47%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAE 56
G G GG GG G G GG GG+G G G G G G G G GRG G+ +
Sbjct: 343 GGGGRGGGGGGGGRGGWGGGGGGWGGG-GGGGGGWGGGGGGGRGGFQGRGD 392
Score = 42.4 bits (98), Expect = 5e-04
Identities = 24/49 (48%), Positives = 26/49 (53%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGK 54
G GG GG GG G GG G G G GRG +GRG GRG GG+
Sbjct: 354 GGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGR 402
Score = 39.7 bits (91), Expect = 0.003
Identities = 24/49 (48%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 6 GAAGGPGGPGGPG-MGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G GG GG G G G RGG+ G G G RG G G G G G G GG
Sbjct: 379 GGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGGG 427
Score = 35.8 bits (81), Expect = 0.046
Identities = 21/46 (45%), Positives = 21/46 (45%)
Query: 15 GGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEW 60
GG G G GG GG G G G G GRG G G G GG W
Sbjct: 331 GGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGW 376
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/41 (46%), Positives = 19/41 (46%)
Query: 4 DAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGR 44
D G GG GG GG G G GG G G G G G G R
Sbjct: 392 DYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGGGYRR 432
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 49.3 bits (116), Expect = 4e-06
Identities = 29/49 (59%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGI-RGRGRGRGRGRGRGRGARGG 53
GA GG G G RGG G G G RGRGRGRGRGRGRGR GG
Sbjct: 53 GARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGG 101
Score = 48.9 bits (115), Expect = 5e-06
Identities = 31/66 (46%), Positives = 33/66 (50%), Gaps = 14/66 (21%)
Query: 3 DDAGAAGGPGGPGGPGM-------GNRGGFRG-------GFGSGIRGRGRGRGRGRGRGR 48
D A GG G P G RGG RG G G G+ GRGRGRGRGRGRGR
Sbjct: 29 DSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGR 88
Query: 49 GARGGK 54
G G+
Sbjct: 89 GRGRGR 94
Score = 28.5 bits (62), Expect = 7.3
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 3 DDAGAAGGPGGPGGPGMGNRGGFRGGFG-SGIRGRGRGRGRGRGRGRG-----ARGG 53
++ +A G G GG +GG S + G R RG GRGRG RGG
Sbjct: 15 EEGESAAGGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAGRGG 71
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 49.3 bits (116), Expect = 4e-06
Identities = 29/49 (59%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGI-RGRGRGRGRGRGRGRGARGG 53
GA GG G G RGG G G G RGRGRGRGRGRGRGR GG
Sbjct: 53 GARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGG 101
Score = 48.9 bits (115), Expect = 5e-06
Identities = 31/66 (46%), Positives = 33/66 (50%), Gaps = 14/66 (21%)
Query: 3 DDAGAAGGPGGPGGPGM-------GNRGGFRG-------GFGSGIRGRGRGRGRGRGRGR 48
D A GG G P G RGG RG G G G+ GRGRGRGRGRGRGR
Sbjct: 29 DSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGR 88
Query: 49 GARGGK 54
G G+
Sbjct: 89 GRGRGR 94
Score = 28.5 bits (62), Expect = 7.3
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 3 DDAGAAGGPGGPGGPGMGNRGGFRGGFG-SGIRGRGRGRGRGRGRGRG-----ARGG 53
++ +A G G GG +GG S + G R RG GRGRG RGG
Sbjct: 15 EEGESAAGGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAGRGG 71
>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
sapiens]
Length = 1802
Score = 49.3 bits (116), Expect = 4e-06
Identities = 28/45 (62%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 9 GGPGGPGGPGMGNRGGF-RGGFGSGIRGRGRGRGRGRGRGRGARG 52
GG G G G +RGG RGG G G RGRG G RGRGRGRG RG
Sbjct: 1671 GGRGRWGRWGRWSRGGRGRGGRGRGSRGRGGGGTRGRGRGRGGRG 1715
Score = 42.0 bits (97), Expect = 6e-04
Identities = 26/50 (52%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 10 GPGGPGGPGMGNRGGFRGGFGSGIRGRGR-GRGRGRGRGRGARGGKAEDK 58
G G GG G G+RG RGG G+ RGRGR GRG RG R R A+D+
Sbjct: 1685 GGRGRGGRGRGSRG--RGGGGTRGRGRGRGGRGASRGATRAKRARIADDE 1732
Score = 41.2 bits (95), Expect = 0.001
Identities = 27/50 (54%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 13 GPGGPGMGNRGG--FRGGFGSGIRGRG-RGRGRGRGRGRG-ARGGKAEDK 58
G GG G R G RGG G G RGRG RGRG G RGRG RGG+ +
Sbjct: 1669 GTGGRGRWGRWGRWSRGGRGRGGRGRGSRGRGGGGTRGRGRGRGGRGASR 1718
>gi|110681708 zinc finger protein 579 [Homo sapiens]
Length = 562
Score = 46.2 bits (108), Expect = 3e-05
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 34 RGRGRGRGRGRGRGRG-ARGGKAEDKEWMPVTKLGRLVK 71
RGRGRGRGRGRGRGRG RGG + +P GRL +
Sbjct: 16 RGRGRGRGRGRGRGRGRGRGGAGAPRAPLPCPTCGRLFR 54
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 45.4 bits (106), Expect = 6e-05
Identities = 24/47 (51%), Positives = 24/47 (51%)
Query: 7 AAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
A GPG GG G G G G G G G GRG RGRG G RGG
Sbjct: 153 ALDGPGAGGGAERGGSGRSSAGGGGGGGGGGGGRGSRRGRGGGERGG 199
Score = 36.2 bits (82), Expect = 0.035
Identities = 24/51 (47%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 3 DDAGAAGGP--GGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGAR 51
D GA GG GG G G GG GG G G RG RGRG G G A+
Sbjct: 155 DGPGAGGGAERGGSGRSSAGGGGG--GGGGGGGRGSRRGRGGGERGGPRAQ 203
Score = 35.4 bits (80), Expect = 0.060
Identities = 20/47 (42%), Positives = 23/47 (48%)
Query: 5 AGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGAR 51
+ GG GG GG G G+R G GG G R + R RGRG R
Sbjct: 172 SAGGGGGGGGGGGGRGSRRGRGGGERGGPRAQAVRRRLSALRGRGRR 218
Score = 32.7 bits (73), Expect = 0.39
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 7 AAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRG--------RGRGRGR 48
++ G GG GG G G RG R G G G RG R + RGRGR R
Sbjct: 171 SSAGGGGGGGGGGGGRGS-RRGRGGGERGGPRAQAVRRRLSALRGRGRRR 219
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G G G GG G G+ GG G +G G G G G G G G G G+RGG
Sbjct: 535 GGGSGGGHSGGSGGGHSGGSGGNYGGG-SGSGGGSGGGYGGGSGSRGG 581
Score = 41.6 bits (96), Expect = 8e-04
Identities = 23/48 (47%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G + G GG G G + GGF GGFG G G G G G G G G GG
Sbjct: 92 GGSRGFGGASGGGYSSSGGFGGGFGG---GSGGGFGGGYGSGFGGFGG 136
Score = 41.6 bits (96), Expect = 8e-04
Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 9 GGPGGPGGP-GMGNRGGFRGGFGSGIRGRGRGRGRG-RGRGRGARGG 53
GG GG GG G G+RGG G +G G G G G G G RG G+ GG
Sbjct: 476 GGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGG 522
Score = 40.8 bits (94), Expect = 0.001
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 5 AGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARG 52
+G+ GG GG G G G+ GG GG+G G G G G G G G+ G
Sbjct: 510 SGSRGGSGGSYGGGSGSGGGSGGGYGGG-SGGGHSGGSGGGHSGGSGG 556
Score = 40.8 bits (94), Expect = 0.001
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGR-GRGRGRGRGRGRGARGG 53
G +GG GG G G G+ GG GG+G G R G G G G G G G
Sbjct: 549 GHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESG 597
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 13 GPGGPGMGNRGGFRGGFGSGIRG------RGRGRGRGRGRGRGARGG 53
G G G+G RGG G +G G RG G G G G G G G+RGG
Sbjct: 469 GAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGG 515
Score = 40.0 bits (92), Expect = 0.002
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 5 AGAAGGPGGPG---GPGMGNRGGFRGGFGSGI-RGRGRGRGRGRGRGRGARGG 53
+G + G GG G G G G+RGG G +G G G G G G G G G G GG
Sbjct: 493 SGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGG 545
Score = 39.7 bits (91), Expect = 0.003
Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 2 ADDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRG 49
A G + G GG G G+ GGF GG+GSG G G G G G G G G
Sbjct: 100 ASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFG-GFGGGAGGGDG 146
Score = 38.5 bits (88), Expect = 0.007
Identities = 24/53 (45%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGS-----GIRGRGRGRGRGRGRGRGARGG 53
G+ GG GG G G G+ GG+ GG GS G G G G G G G G G G
Sbjct: 488 GSRGGSGGSYGGG-GSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSG 539
Score = 38.1 bits (87), Expect = 0.009
Identities = 23/49 (46%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 9 GGPGGPGGPGMGNRGGFRGGFGSGIR---GRGRGRGRGRGRGR-GARGG 53
GG GG G G G+RGG G +G G G G G G G G G G GG
Sbjct: 500 GGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGG 548
Score = 38.1 bits (87), Expect = 0.009
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 5 AGAAGGPGGPGGPGMGNRGGFRG--GFGSGIRGRGRGRGRGRGRGRGARGG 53
+G+ GG GG G G G+RGG G G GSG G G G G+ GG
Sbjct: 562 SGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGG 612
Score = 37.4 bits (85), Expect = 0.016
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 5 AGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGA 50
+G+ GG GG G G G G G +G G G G G G G G+ +
Sbjct: 576 SGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGKSS 621
Score = 35.0 bits (79), Expect = 0.078
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 7 AAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG-----KAEDKEWM 61
+ GG GG G G GG GGFG G G G G G G GA GG A +K M
Sbjct: 101 SGGGYSSSGGFGGGFGGGSGGGFGGGY---GSGFGGFGGFGGGAGGGDGGILTANEKSTM 157
Query: 62 PVTKLGRLVKDM-KIKSLEE 80
RL + K+++LEE
Sbjct: 158 QELN-SRLASYLDKVQALEE 176
Score = 34.7 bits (78), Expect = 0.10
Identities = 22/51 (43%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAE 56
G G GG G G G G RGG G G G G G G G G+ GG E
Sbjct: 559 GGGSGSGGGSGGGYGGGSGSRGGSG-GSHGGGSGFG---GESGGSYGGGEE 605
Score = 33.9 bits (76), Expect = 0.17
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 5 AGAAGGPGGPGGPGMG-NRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
+G + G G GG G GG GG+G G RG G G G G G+ GG
Sbjct: 481 SGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRG-GSGGSYGGGSGSGGG 529
Score = 33.5 bits (75), Expect = 0.23
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRG 35
G+ GG GG G G G GGF GG G G G
Sbjct: 118 GSGGGFGGGYGSGFGGFGGFGGGAGGGDGG 147
Score = 32.0 bits (71), Expect = 0.66
Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 6 GAAGGPGGPGGPGMGNRGGFR-----GGFGSGIRGRGRGRGRGRGRGRGARGG 53
G GG G G+ GGF GGFG G RG G G G G GG
Sbjct: 62 GRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGG 114
Score = 32.0 bits (71), Expect = 0.66
Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 8 AGGPGGPGGPGMGNRG-----GFRGGFGSGIRGRGRGRGRGRGRG-RGARGG 53
+ G G G G G G G RGG G G G G G G G G RG GG
Sbjct: 467 SSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGG 518
Score = 30.4 bits (67), Expect = 1.9
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 12 GGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
GG GG G + GG S + GRG G G G G+ GG
Sbjct: 39 GGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGG 80
Score = 30.4 bits (67), Expect = 1.9
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRG 39
G GG GG G G G+ G GGFG G G G
Sbjct: 114 GFGGGSGGGFGGGYGSGFGGFGGFGGGAGGGDGG 147
Score = 29.6 bits (65), Expect = 3.3
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 12 GGPGGPGMGNRGGFR---------GGFGSGIR-----GRGRGRGRGRGRGRGARGG 53
GG GG G+G+ G R GG G G R G G G R GRG G G
Sbjct: 15 GGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFG 70
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 43.9 bits (102), Expect = 2e-04
Identities = 25/44 (56%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 9 GGPGGPGGPG-----MGNRGGFRGGFGSGIRGRGRGRGRGRGRG 47
GGPGGPGGPG MG RGG RGGF RG RG G G
Sbjct: 416 GGPGGPGGPGGPMGRMGGRGGDRGGFPP--RGPRGSRGNPSGGG 457
Score = 41.6 bits (96), Expect = 8e-04
Identities = 29/51 (56%), Positives = 29/51 (56%), Gaps = 9/51 (17%)
Query: 6 GAAGG---PGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G GG GGPGG G RGG RGGF RG GRG RG G G G RGG
Sbjct: 517 GGRGGLMDRGGPGGMFRGGRGGDRGGF----RG-GRGMDRG-GFGGGRRGG 561
Score = 39.3 bits (90), Expect = 0.004
Identities = 28/58 (48%), Positives = 29/58 (50%), Gaps = 14/58 (24%)
Query: 9 GGPGGP--GGPGMGNRGGFRGGFGSGIRGRGRGRGRG-----------RGRGRGARGG 53
GGPGG GG G G+RGGFRGG G G G GR G G RG RGG
Sbjct: 526 GGPGGMFRGGRG-GDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 582
Score = 38.1 bits (87), Expect = 0.009
Identities = 28/53 (52%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 9 GGPGGPGGPG--MGNRGGF--RGGFGSGIRG-RGRGRG---RGRGRGRGARGG 53
GG G GGPG G RGG RGG G RG RG RG GRG RG GG
Sbjct: 504 GGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGG 556
Score = 38.1 bits (87), Expect = 0.009
Identities = 26/49 (53%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 6 GAAGGPGGPGGPGMGNRGGF--RGGFGSGIRGRGRGRGRGRGRGRGARG 52
G G GGPGG G RGG RGG G RG GRG RG RG RG
Sbjct: 504 GGDRGRGGPGGM-RGGRGGLMDRGGPGGMFRG---GRGGDRGGFRGGRG 548
Score = 37.7 bits (86), Expect = 0.012
Identities = 25/51 (49%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 8 AGGPGGPGG----PGMGNRGGFRGGFGSGIRGR-GRGRGRGRGRGRGARGG 53
+GG GPG G NRG RGGF G R GRG GRG G RGG
Sbjct: 226 SGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGG 276
Score = 37.4 bits (85), Expect = 0.016
Identities = 21/42 (50%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGS-GIRGRGRGRGRGRGR 46
G GGPGGP GP M GG RGG G G +G R R R
Sbjct: 557 GRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDR 598
Score = 36.6 bits (83), Expect = 0.027
Identities = 35/103 (33%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 4 DAGAAGGPG------GPGGPGMGNRGGF-RGGFGSGIRGRGRGRGRGRGRGRGARGGKAE 56
++G GPG GP G G RGGF RGG G RG GRG G G RG
Sbjct: 225 ESGGFSGPGENRSMSGPDNRGRG-RGGFDRGGMSRGGRGGGRG-GMGSAGERGGFNKPGG 282
Query: 57 DKEWMPVTKLGRLVKDMKIKSLEEIYLFSL--PIKESEIIDFF 97
+ P LG V + IY+ L + ++ DFF
Sbjct: 283 PMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDSVTLDDLADFF 325
Score = 29.6 bits (65), Expect = 3.3
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 3 DDAGAAGGPGGPGGPGMGNRGGFRGGFGS-GIRG 35
D+ G G GG G RGG RGG GS G RG
Sbjct: 242 DNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERG 275
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 43.9 bits (102), Expect = 2e-04
Identities = 25/44 (56%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 9 GGPGGPGGPG-----MGNRGGFRGGFGSGIRGRGRGRGRGRGRG 47
GGPGGPGGPG MG RGG RGGF RG RG G G
Sbjct: 471 GGPGGPGGPGGPMGRMGGRGGDRGGFPP--RGPRGSRGNPSGGG 512
Score = 41.6 bits (96), Expect = 8e-04
Identities = 29/51 (56%), Positives = 29/51 (56%), Gaps = 9/51 (17%)
Query: 6 GAAGG---PGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G GG GGPGG G RGG RGGF RG GRG RG G G G RGG
Sbjct: 572 GGRGGLMDRGGPGGMFRGGRGGDRGGF----RG-GRGMDRG-GFGGGRRGG 616
Score = 40.0 bits (92), Expect = 0.002
Identities = 27/51 (52%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 8 AGGPGGPGG----PGMGNRGGFRGGFGSGIRGR-GRGRGRGRGRGRGARGG 53
+GG GPG G NRG RGGF G R GRG GRG G G G RGG
Sbjct: 282 SGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRG-GMGAGERGG 331
Score = 39.3 bits (90), Expect = 0.004
Identities = 28/58 (48%), Positives = 29/58 (50%), Gaps = 14/58 (24%)
Query: 9 GGPGGP--GGPGMGNRGGFRGGFGSGIRGRGRGRGRG-----------RGRGRGARGG 53
GGPGG GG G G+RGGFRGG G G G GR G G RG RGG
Sbjct: 581 GGPGGMFRGGRG-GDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 637
Score = 38.1 bits (87), Expect = 0.009
Identities = 28/53 (52%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 9 GGPGGPGGPG--MGNRGGF--RGGFGSGIRG-RGRGRG---RGRGRGRGARGG 53
GG G GGPG G RGG RGG G RG RG RG GRG RG GG
Sbjct: 559 GGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGG 611
Score = 38.1 bits (87), Expect = 0.009
Identities = 26/49 (53%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 6 GAAGGPGGPGGPGMGNRGGF--RGGFGSGIRGRGRGRGRGRGRGRGARG 52
G G GGPGG G RGG RGG G RG GRG RG RG RG
Sbjct: 559 GGDRGRGGPGGM-RGGRGGLMDRGGPGGMFRG---GRGGDRGGFRGGRG 603
Score = 37.4 bits (85), Expect = 0.016
Identities = 21/42 (50%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGS-GIRGRGRGRGRGRGR 46
G GGPGGP GP M GG RGG G G +G R R R
Sbjct: 612 GRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDR 653
Score = 33.1 bits (74), Expect = 0.30
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 3 DDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRG 35
D+ G G GG G RGG RGG G+G RG
Sbjct: 298 DNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERG 330
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 43.9 bits (102), Expect = 2e-04
Identities = 25/44 (56%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 9 GGPGGPGGPG-----MGNRGGFRGGFGSGIRGRGRGRGRGRGRG 47
GGPGGPGGPG MG RGG RGGF RG RG G G
Sbjct: 477 GGPGGPGGPGGPMGRMGGRGGDRGGFPP--RGPRGSRGNPSGGG 518
Score = 41.6 bits (96), Expect = 8e-04
Identities = 29/51 (56%), Positives = 29/51 (56%), Gaps = 9/51 (17%)
Query: 6 GAAGG---PGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G GG GGPGG G RGG RGGF RG GRG RG G G G RGG
Sbjct: 578 GGRGGLMDRGGPGGMFRGGRGGDRGGF----RG-GRGMDRG-GFGGGRRGG 622
Score = 40.0 bits (92), Expect = 0.002
Identities = 27/51 (52%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 8 AGGPGGPGG----PGMGNRGGFRGGFGSGIRGR-GRGRGRGRGRGRGARGG 53
+GG GPG G NRG RGGF G R GRG GRG G G G RGG
Sbjct: 288 SGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRG-GMGAGERGG 337
Score = 39.3 bits (90), Expect = 0.004
Identities = 28/58 (48%), Positives = 29/58 (50%), Gaps = 14/58 (24%)
Query: 9 GGPGGP--GGPGMGNRGGFRGGFGSGIRGRGRGRGRG-----------RGRGRGARGG 53
GGPGG GG G G+RGGFRGG G G G GR G G RG RGG
Sbjct: 587 GGPGGMFRGGRG-GDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 643
Score = 38.1 bits (87), Expect = 0.009
Identities = 28/53 (52%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 9 GGPGGPGGPG--MGNRGGF--RGGFGSGIRG-RGRGRG---RGRGRGRGARGG 53
GG G GGPG G RGG RGG G RG RG RG GRG RG GG
Sbjct: 565 GGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGG 617
Score = 38.1 bits (87), Expect = 0.009
Identities = 26/49 (53%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 6 GAAGGPGGPGGPGMGNRGGF--RGGFGSGIRGRGRGRGRGRGRGRGARG 52
G G GGPGG G RGG RGG G RG GRG RG RG RG
Sbjct: 565 GGDRGRGGPGGM-RGGRGGLMDRGGPGGMFRG---GRGGDRGGFRGGRG 609
Score = 37.4 bits (85), Expect = 0.016
Identities = 21/42 (50%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGS-GIRGRGRGRGRGRGR 46
G GGPGGP GP M GG RGG G G +G R R R
Sbjct: 618 GRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDR 659
Score = 33.1 bits (74), Expect = 0.30
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 3 DDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRG 35
D+ G G GG G RGG RGG G+G RG
Sbjct: 304 DNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERG 336
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 43.9 bits (102), Expect = 2e-04
Identities = 25/44 (56%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 9 GGPGGPGGPG-----MGNRGGFRGGFGSGIRGRGRGRGRGRGRG 47
GGPGGPGGPG MG RGG RGGF RG RG G G
Sbjct: 472 GGPGGPGGPGGPMGRMGGRGGDRGGFPP--RGPRGSRGNPSGGG 513
Score = 41.6 bits (96), Expect = 8e-04
Identities = 29/51 (56%), Positives = 29/51 (56%), Gaps = 9/51 (17%)
Query: 6 GAAGG---PGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G GG GGPGG G RGG RGGF RG GRG RG G G G RGG
Sbjct: 573 GGRGGLMDRGGPGGMFRGGRGGDRGGF----RG-GRGMDRG-GFGGGRRGG 617
Score = 39.3 bits (90), Expect = 0.004
Identities = 28/58 (48%), Positives = 29/58 (50%), Gaps = 14/58 (24%)
Query: 9 GGPGGP--GGPGMGNRGGFRGGFGSGIRGRGRGRGRG-----------RGRGRGARGG 53
GGPGG GG G G+RGGFRGG G G G GR G G RG RGG
Sbjct: 582 GGPGGMFRGGRG-GDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 638
Score = 38.1 bits (87), Expect = 0.009
Identities = 28/53 (52%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 9 GGPGGPGGPG--MGNRGGF--RGGFGSGIRG-RGRGRG---RGRGRGRGARGG 53
GG G GGPG G RGG RGG G RG RG RG GRG RG GG
Sbjct: 560 GGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGG 612
Score = 38.1 bits (87), Expect = 0.009
Identities = 26/49 (53%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 6 GAAGGPGGPGGPGMGNRGGF--RGGFGSGIRGRGRGRGRGRGRGRGARG 52
G G GGPGG G RGG RGG G RG GRG RG RG RG
Sbjct: 560 GGDRGRGGPGGM-RGGRGGLMDRGGPGGMFRG---GRGGDRGGFRGGRG 604
Score = 37.7 bits (86), Expect = 0.012
Identities = 25/51 (49%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 8 AGGPGGPGG----PGMGNRGGFRGGFGSGIRGR-GRGRGRGRGRGRGARGG 53
+GG GPG G NRG RGGF G R GRG GRG G RGG
Sbjct: 282 SGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGG 332
Score = 37.4 bits (85), Expect = 0.016
Identities = 21/42 (50%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGS-GIRGRGRGRGRGRGR 46
G GGPGGP GP M GG RGG G G +G R R R
Sbjct: 613 GRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDR 654
Score = 36.6 bits (83), Expect = 0.027
Identities = 35/103 (33%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 4 DAGAAGGPG------GPGGPGMGNRGGF-RGGFGSGIRGRGRGRGRGRGRGRGARGGKAE 56
++G GPG GP G G RGGF RGG G RG GRG G G RG
Sbjct: 281 ESGGFSGPGENRSMSGPDNRGRG-RGGFDRGGMSRGGRGGGRG-GMGSAGERGGFNKPGG 338
Query: 57 DKEWMPVTKLGRLVKDMKIKSLEEIYLFSL--PIKESEIIDFF 97
+ P LG V + IY+ L + ++ DFF
Sbjct: 339 PMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDSVTLDDLADFF 381
Score = 29.6 bits (65), Expect = 3.3
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 3 DDAGAAGGPGGPGGPGMGNRGGFRGGFGS-GIRG 35
D+ G G GG G RGG RGG GS G RG
Sbjct: 298 DNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERG 331
>gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens]
Length = 210
Score = 43.9 bits (102), Expect = 2e-04
Identities = 49/135 (36%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 4 DAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRG-RGRGRGRGRG-RG---RGARGGKAEDK 58
DA GGPG P GPG GN GG +G RG RG G R G RG RG GG A +
Sbjct: 14 DADGPGGPGIPDGPG-GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHGGAASAQ 72
Query: 59 EWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFL----------GASLKDEV-- 106
+ G D ++ L FS P+ E+E++ L GA LKD
Sbjct: 73 DGR--CPCGARRPDSRLLQLHITMPFSSPM-EAELVRRILSRDAAPLPRPGAVLKDFTVS 129
Query: 107 --LKIMPVQKQTRAG 119
L M V+ Q R G
Sbjct: 130 GNLLFMSVRDQDREG 144
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 43.9 bits (102), Expect = 2e-04
Identities = 27/56 (48%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 4 DAGAAGGPGG-----PGGPGMGNRGGFRGGFGSGI-RGRGRGRGRGRGRGRGARGG 53
D GG GG GG G G GG GG G G R G RGRG GRG RGG
Sbjct: 198 DQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGG 253
Score = 43.5 bits (101), Expect = 2e-04
Identities = 26/47 (55%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 9 GGPGGPGGPGMGNRGGF--RGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G GGPGG MG G RGG G RG RGRG RG RG RGG
Sbjct: 454 GPGGGPGGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGG 500
Score = 40.0 bits (92), Expect = 0.002
Identities = 28/56 (50%), Positives = 30/56 (53%), Gaps = 12/56 (21%)
Query: 6 GAAGGPGGP------GGPGMGNRGGF-RGGFGSGIRGRGRGRGRGR-GRGRGARGG 53
G GGPGG G G RGG+ RGG+ RGRG RG R GRG G RGG
Sbjct: 454 GPGGGPGGSHMGGNYGDDRRGGRGGYDRGGY----RGRGGDRGGFRGGRGGGDRGG 505
Score = 37.4 bits (85), Expect = 0.016
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G +GG GG GG G G G RGRG GRG G G RGG
Sbjct: 219 GGSGGGGGGGGGGYNRSSG-----GYEPRGRGGGRGGRGGMGGSDRGG 261
Score = 37.0 bits (84), Expect = 0.021
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 5 AGAAGGPGGPGGPG-----MGNRGGFRGGFGSGIRGRGRGRG------RGRGRGRGARGG 53
+G GG GG G G M + GG GG+G+ + G G G RG GRGRG GG
Sbjct: 165 SGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRG-GRGRGGSGG 223
Score = 35.8 bits (81), Expect = 0.046
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEW 60
G G GG G G RGG+ GG GSG GRG G G G GG+ +W
Sbjct: 378 GGGNGRGGRGRGGPMGRGGYGGG-GSGGGGRG-----GFPSGGGGGGGQQRAGDW 426
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 22 RGGFRGGFGSGIRGRGRGRGRGR------GRGRGARGG 53
R F G G+G GRGRG GR G G G RGG
Sbjct: 372 RADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGG 409
Score = 29.6 bits (65), Expect = 3.3
Identities = 21/45 (46%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 4 DAGAAGGPGGPGGPGMGNRGGF-RGGFGSG-IRGRGRGRGRGRGR 46
D G G GG G G RGG RGGFG G + RG R R R
Sbjct: 480 DRGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRER 524
Score = 28.9 bits (63), Expect = 5.6
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 6 GAAGGPGG----PGGPGMGNRGGFRGGFGSGIRGRGRG--RGRGRGRGRGARGGKAEDKE 59
G GG GG GG RGG RGG G G+ G RG G R +G+R +D
Sbjct: 224 GGGGGGGGYNRSSGGYEPRGRGGGRGGRG-GMGGSDRGGFNKFGGPRDQGSRHDSEQDNS 282
Query: 60 WMPVTKLGRLVKDMKIKSLEEIY 82
+ L +++ I+S+ + +
Sbjct: 283 DNNTIFVQGLGENVTIESVADYF 305
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 43.9 bits (102), Expect = 2e-04
Identities = 26/51 (50%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 9 GGPGG------PGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G PGG PG RGG GG G G RGRGRGRG RG RGG
Sbjct: 18 GRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGG 68
Score = 43.1 bits (100), Expect = 3e-04
Identities = 28/55 (50%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 6 GAAGGPGGPGGPGMGNRGG-----FRGGFGSGIRGRGRGRGRGRGRG-RGARGGK 54
G G G PGG R G RGG G G G RGRGRGRG RGARGG+
Sbjct: 12 GRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGR 66
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/57 (49%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 5 AGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRG-RGRGRGRGRGRGARGGKAEDKEW 60
A A GG GG GG G G RG RG RGRG RG GRG G RG + E W
Sbjct: 34 AVARGGGGGGGGDGGGRRG--RG------RGRGFRGARGGRGGGGAPRGSRREPGGW 82
Score = 32.0 bits (71), Expect = 0.66
Identities = 25/60 (41%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 6 GAAGGPGGPGGP------GMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKE 59
G GG GG GG G G RG RGG G G RG R G G G GA +D +
Sbjct: 38 GGGGGGGGDGGGRRGRGRGRGFRGA-RGGRGGGGAPRGSRREPG-GWGAGASAPVEDDSD 95
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 43.9 bits (102), Expect = 2e-04
Identities = 26/49 (53%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 11 PGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRG------RGARGG 53
PG G P G RGG GG G G RG GRG G GRG RG RGG
Sbjct: 162 PGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGG 210
Score = 43.9 bits (102), Expect = 2e-04
Identities = 25/43 (58%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRG-RGRG 47
G GG G GG G G GGFRGG G G G GRG G RGRG
Sbjct: 174 GGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
Score = 42.4 bits (98), Expect = 5e-04
Identities = 32/65 (49%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 1 MADDAGAAGGPGGPGGPGMGNRGG----FRGGFGSGIRGRGRGRGRGR-GRGRGARGG-- 53
M+ G GG GG G NRGG FRGG G G G RG GRG GRG G RGG
Sbjct: 1 MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRG-GGRGGFN 59
Query: 54 KAEDK 58
K +D+
Sbjct: 60 KGQDQ 64
Score = 41.6 bits (96), Expect = 8e-04
Identities = 27/45 (60%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 9 GGPGGP-GGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARG 52
GG GG GG G G RGG RGG G RG G G RG GRG G RG
Sbjct: 171 GGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRG-GRGGGFRG 214
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/43 (58%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 11 PGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
P G GP RGG RGG G G G GRG GRG G RG RGG
Sbjct: 161 PPGEKGP---PRGGGRGGRGGGRGGGGRGGGRG-GGFRGGRGG 199
Score = 37.0 bits (84), Expect = 0.021
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 12 GGPGGPGMGN-RGGFRGGFGSGIRGRGRGRGRGRGRGRG 49
GG GG G GN RGG RGGFG RG GRG G +G+ +G
Sbjct: 31 GGGGGGGGGNFRGGGRGGFG---RGGGRG-GFNKGQDQG 65
Score = 29.3 bits (64), Expect = 4.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 9 GGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRG 41
GG GG G G RGGF G G G +G+ +G
Sbjct: 33 GGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQG 65
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 43.9 bits (102), Expect = 2e-04
Identities = 26/49 (53%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 11 PGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRG------RGARGG 53
PG G P G RGG GG G G RG GRG G GRG RG RGG
Sbjct: 162 PGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGG 210
Score = 43.9 bits (102), Expect = 2e-04
Identities = 25/43 (58%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRG-RGRG 47
G GG G GG G G GGFRGG G G G GRG G RGRG
Sbjct: 174 GGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
Score = 42.4 bits (98), Expect = 5e-04
Identities = 32/65 (49%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 1 MADDAGAAGGPGGPGGPGMGNRGG----FRGGFGSGIRGRGRGRGRGR-GRGRGARGG-- 53
M+ G GG GG G NRGG FRGG G G G RG GRG GRG G RGG
Sbjct: 1 MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRG-GGRGGFN 59
Query: 54 KAEDK 58
K +D+
Sbjct: 60 KGQDQ 64
Score = 41.6 bits (96), Expect = 8e-04
Identities = 27/45 (60%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 9 GGPGGP-GGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARG 52
GG GG GG G G RGG RGG G RG G G RG GRG G RG
Sbjct: 171 GGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRG-GRGGGFRG 214
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/43 (58%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 11 PGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
P G GP RGG RGG G G G GRG GRG G RG RGG
Sbjct: 161 PPGEKGP---PRGGGRGGRGGGRGGGGRGGGRG-GGFRGGRGG 199
Score = 37.0 bits (84), Expect = 0.021
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 12 GGPGGPGMGN-RGGFRGGFGSGIRGRGRGRGRGRGRGRG 49
GG GG G GN RGG RGGFG RG GRG G +G+ +G
Sbjct: 31 GGGGGGGGGNFRGGGRGGFG---RGGGRG-GFNKGQDQG 65
Score = 29.3 bits (64), Expect = 4.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 9 GGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRG 41
GG GG G G RGGF G G G +G+ +G
Sbjct: 33 GGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQG 65
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 43.9 bits (102), Expect = 2e-04
Identities = 26/46 (56%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 18 GMGNRGGFRGGFGSGIRGRGRGRGRG---RGRGRGARGG-KAEDKE 59
G G+RG RG G G RG RGRG G RGRGRG+ GG ED+E
Sbjct: 237 GRGSRGRGRGYRGRGSRGGSRGRGMGRGSRGRGRGSMGGDHPEDEE 282
Score = 41.2 bits (95), Expect = 0.001
Identities = 20/30 (66%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 24 GFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G G G G RGRG+G GRGRGRG G+RGG
Sbjct: 323 GLSRGRGRGSRGRGKGMGRGRGRG-GSRGG 351
Score = 37.4 bits (85), Expect = 0.016
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 21 NRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEW 60
+RG RG G G +G GRGRGRG RG +GG +D+++
Sbjct: 325 SRGRGRGSRGRG-KGMGRGRGRGGSRGGMNKGGMNDDEDF 363
Score = 34.7 bits (78), Expect = 0.10
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 6 GAAGGPG----GPGGPGMGNRGGFRGGFGSGIRGRGRG-RGRGRGRGRGARGGKAED 57
G++ G G G G G G+RGG RG RG GRG RGRGRG G ED
Sbjct: 233 GSSRGRGSRGRGRGYRGRGSRGGSRG------RGMGRGSRGRGRGSMGGDHPEDEED 283
Score = 30.0 bits (66), Expect = 2.5
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 34 RGRGRGRGRGRG-RGRGARGGKAEDK 58
RGRG RGRGRG RGRG G+ +
Sbjct: 320 RGRGLSRGRGRGSRGRGKGMGRGRGR 345
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 43.5 bits (101), Expect = 2e-04
Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 6 GAAGGPGGPGGPGMGNR-GGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G+ GG GG G G G+ GG+RGG G G G G GRG G G+ GG
Sbjct: 567 GSGGGGGGHGSYGSGSSSGGYRGGSGGG----GGGSSGGRGSGGGSSGG 611
Score = 43.1 bits (100), Expect = 3e-04
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 6 GAAGGPGGPGGPGMG--------NRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGK 54
G+ GG G GG G G + GG+RGG G G G GRG G G G+ GG+
Sbjct: 560 GSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSGGGSSGGSIGGR 616
Score = 37.7 bits (86), Expect = 0.012
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGS-----GIRGRGRGRGRGRGRGRGARGGKA 55
G++ G GG G G G GG G +GS G RG G G G GRG+ GG +
Sbjct: 556 GSSYGSGG-GSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSGGGSS 609
Score = 37.0 bits (84), Expect = 0.021
Identities = 24/44 (54%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRG 49
G G GG GG G+G GGF GGFGSG G G G G G G G
Sbjct: 101 GGGFGGGGFGGGGIGG-GGF-GGFGSGGGGFGGGGFGGGGYGGG 142
Score = 35.8 bits (81), Expect = 0.046
Identities = 18/46 (39%), Positives = 20/46 (43%)
Query: 2 ADDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRG 47
+ G GG GG GG G RG G G I GRG G + G
Sbjct: 582 SSSGGYRGGSGGGGGGSSGGRGSGGGSSGGSIGGRGSSSGGVKSSG 627
Score = 35.4 bits (80), Expect = 0.060
Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGR-GRGRGRGARG 52
G+ GG G GG G GG RG +GSG G G G G G G G G
Sbjct: 533 GSGGGSYGSGGGG----GGGRGSYGSGGSSYGSGGGSYGSGGGGGGHG 576
Score = 35.0 bits (79), Expect = 0.078
Identities = 22/46 (47%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 8 AGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
+G GG GG G G G GGFG G G G G G G G G GG
Sbjct: 88 SGFGGGYGGGGFGGGGFGGGGFGGG--GIGGGGFGGFGSGGGGFGG 131
Score = 35.0 bits (79), Expect = 0.078
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 7 AAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKA 55
+ GG G GG G G+ G +GSG G G G G GRG GG +
Sbjct: 513 SGGGSRGGGGGGYGSGGS---SYGSGGGSYGSGGGGGGGRGSYGSGGSS 558
Score = 34.3 bits (77), Expect = 0.13
Identities = 25/52 (48%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGG--FGSGIRGRGRGRG--RGRGRGRGARGG 53
G G GG GG G G GGF GG G G G G G G G G G G GG
Sbjct: 91 GGGYGGGGFGGGGFGG-GGFGGGGIGGGGFGGFGSGGGGFGGGGFGGGGYGG 141
Score = 33.9 bits (76), Expect = 0.17
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGR----GRGRGRGRGRGARGG 53
G GG G GG G+ GG G G G GRG G G G G GG
Sbjct: 519 GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGG 570
Score = 33.5 bits (75), Expect = 0.23
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKA 55
G+ G G G G G+ G GG G G G G G RG G GG +
Sbjct: 550 GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSS 599
Score = 32.7 bits (73), Expect = 0.39
Identities = 22/44 (50%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRG 49
G GG G GG G G GGF G G G G G G G G G G G
Sbjct: 103 GFGGGGFGGGGIGGGGFGGFGSG-GGGFGGGGFG-GGGYGGGYG 144
Score = 32.0 bits (71), Expect = 0.66
Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G G G GG G G GG GGFG G G G G G G G G+ GG
Sbjct: 83 GGGRGSGFGGGYGGGGFGG--GGFGGGGFG-GGGIGGGGFGGFGSGGG 127
Score = 32.0 bits (71), Expect = 0.66
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGS-GIRGRGRGRGRGRGRGRGARGG 53
G+ GG GG G G + G G +GS G G GRG G G+ GG
Sbjct: 516 GSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGG 564
Score = 32.0 bits (71), Expect = 0.66
Identities = 18/44 (40%), Positives = 19/44 (43%)
Query: 10 GPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G GG GG G GG G G G G G G G G G+ G
Sbjct: 542 GGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSG 585
Score = 30.0 bits (66), Expect = 2.5
Identities = 24/63 (38%), Positives = 25/63 (39%), Gaps = 17/63 (26%)
Query: 8 AGGPGGPGGPGMGNRGGF--RGGFGSG---------------IRGRGRGRGRGRGRGRGA 50
+GG GG G G F GGFGS RG GRG G G G G G
Sbjct: 39 SGGGGGRFSSCGGGGGSFGAGGGFGSRSLVNLGGSKSISISVARGGGRGSGFGGGYGGGG 98
Query: 51 RGG 53
GG
Sbjct: 99 FGG 101
Score = 28.5 bits (62), Expect = 7.3
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 7 AAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDK 58
++GG G G G G G RG G G GRG G G + GG + K
Sbjct: 583 SSGGYRGGSGGGGGGSSGGRGSGGGSSGGSIGGRGSSSG-GVKSSGGSSSVK 633
Score = 28.1 bits (61), Expect = 9.6
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 6 GAAGGPGG-PGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G+ GG GG G G GG SG RG G G G GRG+ G
Sbjct: 579 GSGSSSGGYRGGSGGG------GGGSSGGRGSGGGSSGGSIGGRGSSSG 621
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 43.5 bits (101), Expect = 2e-04
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 3 DDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAED 57
D G AGG G GG G G GG G G G G G G+ G G+G+ GK D
Sbjct: 548 DGQGTAGGHGSGGGQRPGGGHGSGGGQGPG-DGHGSGGGKNSGGGKGSGSGKGSD 601
Score = 35.8 bits (81), Expect = 0.046
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 6 GAAGGPGGPGGPGMGNR-----GGFRGGFGSG-----IRGRGRGRGRGRGRGRGARGGK 54
G+ GG G G GN+ G GG GSG G G G G+G G G G+ GGK
Sbjct: 528 GSRGGQGSNGQGSGGNQCSRDGQGTAGGHGSGGGQRPGGGHGSGGGQGPGDGHGSGGGK 586
Score = 30.8 bits (68), Expect = 1.5
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 3 DDAGAAGGPGGP-----GGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAED 57
+D +GG P G G G+ GG +G G G G + G G+G+RGG+ +
Sbjct: 478 EDQEGSGGDYMPMNNWGSGNGRGSGGG-QGSNGQGSSSHSSGGNQCSGEGQGSRGGQGSN 536
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 43.1 bits (100), Expect = 3e-04
Identities = 25/53 (47%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 3 DDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKA 55
D G GGPGG GGPG G GG GG G G G G G G GG A
Sbjct: 145 DGPGGGGGPGGGGGPGGGPGGGGGGGPGGG----------GGGPGGGLLGGSA 187
Score = 37.4 bits (85), Expect = 0.016
Identities = 25/51 (49%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 5 AGAAGGPGGPGG--PGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
AG AG G GG G G GG GG G G G G G G G G G G GG
Sbjct: 131 AGGAGAAAGGGGAHDGPGGGGGPGGGGGPG-GGPGGGGGGGPGGGGGGPGG 180
Score = 34.7 bits (78), Expect = 0.10
Identities = 22/49 (44%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 5 AGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
AGA G GG G + G GG G G G G G G G G G G GG
Sbjct: 129 AGAGGAGAAAGGGGAHDGPGGGGGPGGG-GGPGGGPGGGGGGGPGGGGG 176
>gi|194018511 keratin 77 [Homo sapiens]
Length = 578
Score = 42.7 bits (99), Expect = 4e-04
Identities = 28/54 (51%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 6 GAAGGPG--GPGGPGMGNRGGFRGGF---GSGIRGR-GRGRGRGRGRGRGARGG 53
G AGG G G GG G G+ GG+ GG G G RGR G G G G G G G+ GG
Sbjct: 498 GGAGGGGSYGSGGYGGGSGGGYGGGRSYRGGGARGRSGGGYGSGCGGGGGSYGG 551
Score = 35.0 bits (79), Expect = 0.078
Identities = 23/52 (44%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 6 GAAGGPGGPGGPGMGNRGG-----FRGGFGSGIRGRGRGRGRGRGRGRGARG 52
G GG GG G G RGG GG+GSG G G G G GR RG
Sbjct: 510 GYGGGSGGGYGGGRSYRGGGARGRSGGGYGSGCGGGGGSYG---GSGRSGRG 558
Score = 32.0 bits (71), Expect = 0.66
Identities = 17/36 (47%), Positives = 18/36 (50%)
Query: 23 GGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDK 58
GG GG G G G G G G G GR RGG A +
Sbjct: 498 GGAGGGGSYGSGGYGGGSGGGYGGGRSYRGGGARGR 533
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGR 40
GA G GG G G G GG GG SG GRG R
Sbjct: 529 GARGRSGGGYGSGCGGGGGSYGG--SGRSGRGSSR 561
Score = 28.9 bits (63), Expect = 5.6
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
G GG GG G G+G+ G GGFG G G G G G GG
Sbjct: 86 GGVGGFGGGRGFGVGSTGA--GGFGGGGFG-----GAGFGTSNFGLGG 126
>gi|4503119 cancer/testis antigen 1B [Homo sapiens]
Length = 180
Score = 42.4 bits (98), Expect = 5e-04
Identities = 27/57 (47%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 4 DAGAAGGPGGPGGPGMGNRG-----GFRGGFGSGIRGRGRGRGRGRGRGRGARGGKA 55
DA GGPG P GPG GN G G GG G G R G G G RG GG A
Sbjct: 14 DADGPGGPGIPDGPG-GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAA 69
Score = 30.4 bits (67), Expect = 1.9
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 4 DAGAAGGPGGPG-------GPGMGNRGGFRGGFGSGIRGRGRGRGRG 43
+AGA GG G G GPG G G GG SG+ G R RG
Sbjct: 36 EAGATGGRGPRGAGAARASGPGGGAPRGPHGGAASGLNGCCRCGARG 82
>gi|4502565 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 42.4 bits (98), Expect = 5e-04
Identities = 25/50 (50%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 6 GAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKA 55
G GG GG GG G G G GG SG G G G G G G G G GG A
Sbjct: 10 GGGGGGGGGGGLG-GGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTA 58
Score = 28.5 bits (62), Expect = 7.3
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 5 AGAAGGPGGPGGPGMGNRGGFRGGFGSGIR 34
+GA GG GG GG G GG GG G+ +R
Sbjct: 34 SGAGGGGGGGGG---GGGGGGGGGGGTAMR 60
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.139 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,232,130
Number of Sequences: 37866
Number of extensions: 670734
Number of successful extensions: 14690
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 246
Number of HSP's that attempted gapping in prelim test: 5767
Number of HSP's gapped (non-prelim): 6426
length of query: 293
length of database: 18,247,518
effective HSP length: 101
effective length of query: 192
effective length of database: 14,423,052
effective search space: 2769225984
effective search space used: 2769225984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.