Guide to the Human Genome
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Name: SLAIN2 Sequence: fasta or formatted (581aa) NCBI GI: 149588928
Description:

SLAIN motif family, member 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         36           2
 C cysteine            0.7          4           1
 D aspartate           4.5         26           2
 E glutamate           5.2         30           5
 F phenylalanine       1.4          8           1
 G glycine             6.7         39           3
 H histidine           0.9          5           2
 I isoleucine          2.4         14           1
 K lysine              4.5         26           3
 L leucine             8.3         48           2
 M methionine          1.9         11           1
 N asparagine          5.2         30           2
 P proline            11.0         64           2
 Q glutamine           5.5         32           2
 R arginine            7.4         43           2
 S serine             16.7         97           2
 T threonine           4.3         25           2
 V valine              4.6         27           1
 W tryptophan          0.7          4           1
 Y tyrosine            2.1         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SLAIN motif family, member 2 
SLAIN1                0.147   SLAIN motif family, member 1 A 
SLAIN1                0.114   SLAIN motif family, member 1 B 
SRRM2                 0.027   splicing coactivator subunit SRm300 
NCOA6                 0.026   nuclear receptor coactivator 6 
SOS1                  0.025   son of sevenless homolog 1 
RERE                  0.023   atrophin-1 like protein isoform b 
RERE                  0.023   atrophin-1 like protein isoform a 
RERE                  0.023   atrophin-1 like protein isoform a 
SRRM1                 0.023   serine/arginine repetitive matrix 1 
LOC100133756          0.022   PREDICTED: hypothetical protein, partial 
PCLO                  0.021   piccolo isoform 2 
PCLO                  0.021   piccolo isoform 1 
ABI3BP                0.021   ABI gene family, member 3 (NESH) binding protein [Ho...
NUP214                0.021   nucleoporin 214kDa 
DOCK4                 0.020   dedicator of cytokinesis 4 
NACA                  0.019   nascent polypeptide-associated complex alpha subuni...
PRG4                  0.019   proteoglycan 4 isoform B 
PRG4                  0.019   proteoglycan 4 isoform A 
RAB11FIP1             0.019   RAB11 family interacting protein 1 isoform 3 
BCL9L                 0.019   B-cell CLL/lymphoma 9-like 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
GTSE1                 0.019   G-2 and S-phase expressed 1 
GLTSCR1               0.019   glioma tumor suppressor candidate region gene 1 [Ho...
SH3BP1                0.019   SH3-domain binding protein 1 
MUC7                  0.019   mucin 7, secreted precursor 
MUC7                  0.019   mucin 7, secreted precursor 
MUC7                  0.019   mucin 7, secreted precursor 
SETD5                 0.019   SET domain containing 5 
PSRC1                 0.018   proline/serine-rich coiled-coil 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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