Guide to the Human Genome
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Name: ATXN7L3 Sequence: fasta or formatted (347aa) NCBI GI: 149588534
Description:

ataxin 7-like 3 isoform b

Referenced in:

Cerebellum

Other entries for this name:
alt prot [354aa] ataxin 7-like 3 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         14           2
 C cysteine            2.9         10           1
 D aspartate           8.1         28           2
 E glutamate           6.3         22           2
 F phenylalanine       3.2         11           2
 G glycine             6.1         21           1
 H histidine           1.7          6           1
 I isoleucine          4.0         14           1
 K lysine              8.9         31           4
 L leucine             7.5         26           2
 M methionine          2.3          8           1
 N asparagine          6.6         23           2
 P proline             5.2         18           2
 Q glutamine           3.2         11           1
 R arginine            5.2         18           2
 S serine             14.1         49           2
 T threonine           4.3         15           2
 V valine              3.2         11           1
 W tryptophan          1.2          4           1
 Y tyrosine            2.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ataxin 7-like 3 isoform b 
ATXN7L3               0.990   ataxin 7-like 3 isoform a 
LOC552889             0.108   hypothetical protein LOC552889 
ATXN7L1               0.032   ataxin 7-like 1 isoform 1 
ATXN7L1               0.032   ataxin 7-like 1 isoform 3 
ATXN7L2               0.025   ataxin 7-like 2 
RBBP6                 0.022   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.022   retinoblastoma-binding protein 6 isoform 1 
ATXN7                 0.022   ataxin 7 isoform b 
ATXN7                 0.022   ataxin 7 isoform a 
DSPP                  0.020   dentin sialophosphoprotein preproprotein 
PPIG                  0.017   peptidylprolyl isomerase G 
RCOR3                 0.017   REST corepressor 3 isoform c 
RCOR3                 0.017   REST corepressor 3 isoform b 
RCOR3                 0.017   REST corepressor 3 isoform a 
RCOR3                 0.017   REST corepressor 3 isoform d 
ANKS3                 0.017   ankyrin repeat and sterile alpha motif domain contai...
ARL6IP4               0.016   SRp25 nuclear protein isoform 3 
ARHGAP21              0.016   Rho GTPase activating protein 21 
FAM133A               0.015   hypothetical protein LOC286499 
MPHOSPH8              0.015   M-phase phosphoprotein 8 
JMJD1C                0.015   jumonji domain containing 1C isoform a 
JMJD1C                0.015   jumonji domain containing 1C isoform b 
SYNPO2L               0.015   synaptopodin 2-like isoform a 
CROP                  0.015   cisplatin resistance-associated overexpressed protei...
CROP                  0.015   cisplatin resistance-associated overexpressed protei...
SYNPO2L               0.015   synaptopodin 2-like isoform b 
RBBP8                 0.013   retinoblastoma binding protein 8 isoform a 
RBBP8                 0.013   retinoblastoma binding protein 8 isoform a 
ESPN                  0.012   espin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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