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Search of human proteins with 148539890
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148539890 mannosyl (beta-1,4-)-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase [Homo sapiens]
(533 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148539890 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetyl... 1136 0.0
gi|148539888 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetyl... 1136 0.0
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 34 0.29
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain... 34 0.38
gi|93277115 ataxin 7-like 2 [Homo sapiens] 33 0.50
gi|4503493 early growth response 1 [Homo sapiens] 33 0.65
gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens] 33 0.65
gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens] 33 0.65
gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens] 33 0.65
gi|153946395 tenascin C precursor [Homo sapiens] 33 0.85
gi|16418357 ankyrin repeat domain 40 [Homo sapiens] 33 0.85
gi|110347400 odz, odd Oz/ten-m homolog 1 isoform 3 [Homo sapiens] 32 1.1
gi|253970446 odz, odd Oz/ten-m homolog 1 isoform 2 [Homo sapiens] 32 1.1
gi|253970444 odz, odd Oz/ten-m homolog 1 isoform 1 [Homo sapiens] 32 1.1
gi|169180010 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
gi|169178954 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
gi|169176365 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 32 1.1
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 32 1.1
gi|212720861 tubulin tyrosine ligase-like family, member 11 a [H... 32 1.5
gi|89363028 tubulin tyrosine ligase-like family, member 11 b [Ho... 32 1.5
gi|148276998 zinc finger protein 628 [Homo sapiens] 32 1.5
gi|238859653 pleckstrin homology domain containing family A memb... 32 1.9
gi|169173182 PREDICTED: hypothetical protein [Homo sapiens] 32 1.9
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 32 1.9
gi|48717285 hypothetical protein LOC389763 [Homo sapiens] 31 2.5
gi|27436940 reelin isoform b [Homo sapiens] 31 2.5
gi|27436938 reelin isoform a [Homo sapiens] 31 2.5
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 31 2.5
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 31 2.5
>gi|148539890 mannosyl (beta-1,4-)-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase [Homo sapiens]
Length = 533
Score = 1136 bits (2939), Expect = 0.0
Identities = 533/533 (100%), Positives = 533/533 (100%)
Query: 1 MKMRRYKLFLMFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLVSSFFWNNAPVTPQA 60
MKMRRYKLFLMFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLVSSFFWNNAPVTPQA
Sbjct: 1 MKMRRYKLFLMFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLVSSFFWNNAPVTPQA 60
Query: 61 SPEPGGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFVRTKAGGVCFKP 120
SPEPGGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFVRTKAGGVCFKP
Sbjct: 61 SPEPGGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFVRTKAGGVCFKP 120
Query: 121 GTKMLERPPPGRPEEKPEGANGSSARRPPRYLLSARERTGGRGARRKWVECVCLPGWHGP 180
GTKMLERPPPGRPEEKPEGANGSSARRPPRYLLSARERTGGRGARRKWVECVCLPGWHGP
Sbjct: 121 GTKMLERPPPGRPEEKPEGANGSSARRPPRYLLSARERTGGRGARRKWVECVCLPGWHGP 180
Query: 181 SCGVPTVVQYSNLPTKERLVPREVPRRVINAINVNHEFDLLDVRFHELGDVVDAFVVCES 240
SCGVPTVVQYSNLPTKERLVPREVPRRVINAINVNHEFDLLDVRFHELGDVVDAFVVCES
Sbjct: 181 SCGVPTVVQYSNLPTKERLVPREVPRRVINAINVNHEFDLLDVRFHELGDVVDAFVVCES 240
Query: 241 NFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLDHFPPGGRQDGWIADDYLRTFLTQDG 300
NFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLDHFPPGGRQDGWIADDYLRTFLTQDG
Sbjct: 241 NFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLDHFPPGGRQDGWIADDYLRTFLTQDG 300
Query: 301 VSRLRNLRPDDVFIIDDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLE 360
VSRLRNLRPDDVFIIDDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLE
Sbjct: 301 VSRLRNLRPDDVFIIDDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLE 360
Query: 361 VVSGCTVDMLQAVYGLDGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCS 420
VVSGCTVDMLQAVYGLDGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCS
Sbjct: 361 VVSGCTVDMLQAVYGLDGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCS 420
Query: 421 WCFTPEGIYFKLVSAQNGDFPRWGDYEDKRDLNYIRGLIRTGGWFDGTQQEYPPADPSEH 480
WCFTPEGIYFKLVSAQNGDFPRWGDYEDKRDLNYIRGLIRTGGWFDGTQQEYPPADPSEH
Sbjct: 421 WCFTPEGIYFKLVSAQNGDFPRWGDYEDKRDLNYIRGLIRTGGWFDGTQQEYPPADPSEH 480
Query: 481 MYAPKYLLKNYDRFHYLLDNPYQEPRSTAAGGWRHRGPEGRPPARGKLDEAEV 533
MYAPKYLLKNYDRFHYLLDNPYQEPRSTAAGGWRHRGPEGRPPARGKLDEAEV
Sbjct: 481 MYAPKYLLKNYDRFHYLLDNPYQEPRSTAAGGWRHRGPEGRPPARGKLDEAEV 533
>gi|148539888 mannosyl (beta-1,4-)-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase [Homo sapiens]
Length = 533
Score = 1136 bits (2939), Expect = 0.0
Identities = 533/533 (100%), Positives = 533/533 (100%)
Query: 1 MKMRRYKLFLMFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLVSSFFWNNAPVTPQA 60
MKMRRYKLFLMFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLVSSFFWNNAPVTPQA
Sbjct: 1 MKMRRYKLFLMFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLVSSFFWNNAPVTPQA 60
Query: 61 SPEPGGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFVRTKAGGVCFKP 120
SPEPGGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFVRTKAGGVCFKP
Sbjct: 61 SPEPGGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFVRTKAGGVCFKP 120
Query: 121 GTKMLERPPPGRPEEKPEGANGSSARRPPRYLLSARERTGGRGARRKWVECVCLPGWHGP 180
GTKMLERPPPGRPEEKPEGANGSSARRPPRYLLSARERTGGRGARRKWVECVCLPGWHGP
Sbjct: 121 GTKMLERPPPGRPEEKPEGANGSSARRPPRYLLSARERTGGRGARRKWVECVCLPGWHGP 180
Query: 181 SCGVPTVVQYSNLPTKERLVPREVPRRVINAINVNHEFDLLDVRFHELGDVVDAFVVCES 240
SCGVPTVVQYSNLPTKERLVPREVPRRVINAINVNHEFDLLDVRFHELGDVVDAFVVCES
Sbjct: 181 SCGVPTVVQYSNLPTKERLVPREVPRRVINAINVNHEFDLLDVRFHELGDVVDAFVVCES 240
Query: 241 NFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLDHFPPGGRQDGWIADDYLRTFLTQDG 300
NFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLDHFPPGGRQDGWIADDYLRTFLTQDG
Sbjct: 241 NFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLDHFPPGGRQDGWIADDYLRTFLTQDG 300
Query: 301 VSRLRNLRPDDVFIIDDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLE 360
VSRLRNLRPDDVFIIDDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLE
Sbjct: 301 VSRLRNLRPDDVFIIDDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLE 360
Query: 361 VVSGCTVDMLQAVYGLDGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCS 420
VVSGCTVDMLQAVYGLDGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCS
Sbjct: 361 VVSGCTVDMLQAVYGLDGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCS 420
Query: 421 WCFTPEGIYFKLVSAQNGDFPRWGDYEDKRDLNYIRGLIRTGGWFDGTQQEYPPADPSEH 480
WCFTPEGIYFKLVSAQNGDFPRWGDYEDKRDLNYIRGLIRTGGWFDGTQQEYPPADPSEH
Sbjct: 421 WCFTPEGIYFKLVSAQNGDFPRWGDYEDKRDLNYIRGLIRTGGWFDGTQQEYPPADPSEH 480
Query: 481 MYAPKYLLKNYDRFHYLLDNPYQEPRSTAAGGWRHRGPEGRPPARGKLDEAEV 533
MYAPKYLLKNYDRFHYLLDNPYQEPRSTAAGGWRHRGPEGRPPARGKLDEAEV
Sbjct: 481 MYAPKYLLKNYDRFHYLLDNPYQEPRSTAAGGWRHRGPEGRPPARGKLDEAEV 533
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 34.3 bits (77), Expect = 0.29
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 63 EPGGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFVRTKAGGVCFKPGT 122
+ GG + +R + PL P PPS+ +L R +V + G+ P T
Sbjct: 296 DQGGLEAVRQEMRRQEPLPPPPPPSRGGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPT 355
Query: 123 KMLERPPPGR--PEEKPEGANGSSARRPP 149
PPPGR P P A G S PP
Sbjct: 356 PR-GPPPPGRGGPPPPPPPATGRSGPLPP 383
>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
proline-rich containing [Homo sapiens]
Length = 1435
Score = 33.9 bits (76), Expect = 0.38
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Query: 35 PRELASLSPNLVSSFFWNNAPVTPQASPEPGGPDLLRTPLYSHSPLLQPLP--PSKAAEE 92
P++ LS L F ++A + PE P P S P P P A
Sbjct: 944 PQKWPELSHGLHLVPFIHSAAEEAEPEPELAAPGEDAEPQAGPSARGSPSPAAPGPPAGP 1003
Query: 93 LHRVDLVLPEDTTEYFVRTKAGGVCFKPGTKMLERPPPGRPE---EKPEGANGSSAR 146
L R+DL L + R + +P + RPPPG P+ P+ NG SAR
Sbjct: 1004 LPRMDLPLAGQPLRHPTRARP-----RPRRQHHHRPPPGGPQVPPALPQEGNGLSAR 1055
>gi|93277115 ataxin 7-like 2 [Homo sapiens]
Length = 722
Score = 33.5 bits (75), Expect = 0.50
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 16/166 (9%)
Query: 35 PRELASLSPNLVSSFFWNNAPVTPQASPEP--GGPDLLRTPLYSH--SPLLQPLPPSKAA 90
P + NLV S+ + V S GG + +PL ++ SP LPPSKA+
Sbjct: 495 PASMPPTKDNLVPSYPAGSPSVAAACSQAECMGGSQAITSPLPANTPSPSFSKLPPSKAS 554
Query: 91 EELHRVDLVLPEDTTEYFVRTKAGGVCFKPGTKMLERPPPGRPEEKPEGANGSSARRPPR 150
+ D V E + R + G T +LE P G+ KP G G SA+
Sbjct: 555 KSSKGKDGVEVEAPSR--KRKLSPGPTTLKRTCILE--PTGK--GKPSGCRGLSAKTKTA 608
Query: 151 YLLSARERTGGRGARRKWVECVCLPGWHGPSCGVPTVVQYSNLPTK 196
+ G R R ++C G +PT V+ S L +
Sbjct: 609 LSMGLNGTMGPRVKRAGPLDC------RGSPHQLPTPVKASQLENR 648
>gi|4503493 early growth response 1 [Homo sapiens]
Length = 543
Score = 33.1 bits (74), Expect = 0.65
Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 12/130 (9%)
Query: 34 FPRELASLSPNLVSSFFWNNAPVTPQASPEPGGPDLLRTPLYSHSPLLQPLPPSKAAEEL 93
+P L SL LVS N P + ++P P S SP L PS + +
Sbjct: 150 WPEPLFSLVSGLVSM---TNPPASSSSAPSPAASSASA----SQSPPLSCAVPSNDSSPI 202
Query: 94 HRVDLVLPEDTTEYFVRTKAGGVCFKPGTKMLERPPPGRPEEKPEGANGSSARRPPRYLL 153
+ P T+ F ++ GT + + PPP P K G P YL
Sbjct: 203 YSAAPTFPTPNTDIFPEPQSQAFPGSAGTAL-QYPPPAYPAAK----GGFQVPMIPDYLF 257
Query: 154 SARERTGGRG 163
++ G G
Sbjct: 258 PQQQGDLGLG 267
>gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens]
Length = 1805
Score = 33.1 bits (74), Expect = 0.65
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 170 ECVCLPGWHGPSCGVP 185
+CVC PGW GPSC P
Sbjct: 561 QCVCEPGWTGPSCDCP 576
>gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens]
Length = 1822
Score = 33.1 bits (74), Expect = 0.65
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 170 ECVCLPGWHGPSCGVP 185
+CVC PGW GPSC P
Sbjct: 561 QCVCEPGWTGPSCDCP 576
>gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens]
Length = 1752
Score = 33.1 bits (74), Expect = 0.65
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 170 ECVCLPGWHGPSCGVP 185
+CVC PGW GPSC P
Sbjct: 561 QCVCEPGWTGPSCDCP 576
>gi|153946395 tenascin C precursor [Homo sapiens]
Length = 2201
Score = 32.7 bits (73), Expect = 0.85
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 140 ANGSSARRPPRYLLSARERTGGRGA-RRKWVECVCLPGWHGPSCGVP 185
A +P L R GRG + CVC PGW GP+C P
Sbjct: 142 AGAGCCLQPATGRLDTRPFCSGRGNFSTEGCGCVCEPGWKGPNCSEP 188
>gi|16418357 ankyrin repeat domain 40 [Homo sapiens]
Length = 368
Score = 32.7 bits (73), Expect = 0.85
Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 5/103 (4%)
Query: 52 NNAPVTPQASPEPGGPDLLRTPLYSHSPLLQPLPPSKAAEEL-HRVDLVLPEDTTEYFVR 110
N P TP ASP G L P PLL P + L D+ P
Sbjct: 145 NGGPSTPPASPPADGSPPLLPP--GEPPLLGTFPRDHTSLALVQNGDVSAPSAILRTPES 202
Query: 111 TKAGGVCFKP--GTKMLERPPPGRPEEKPEGANGSSARRPPRY 151
TK G VC P ++ L P +P E NG+ A P +
Sbjct: 203 TKPGPVCQPPVSQSRSLFSSVPSKPPMSLEPQNGTYAGPAPAF 245
>gi|110347400 odz, odd Oz/ten-m homolog 1 isoform 3 [Homo sapiens]
Length = 2725
Score = 32.3 bits (72), Expect = 1.1
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 160 GGRGARRKWVECVCLPGWHGPSCGVP 185
GG G K CVC GW GP C VP
Sbjct: 568 GGNGEYEKG-HCVCRHGWKGPECDVP 592
>gi|253970446 odz, odd Oz/ten-m homolog 1 isoform 2 [Homo sapiens]
Length = 2731
Score = 32.3 bits (72), Expect = 1.1
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 160 GGRGARRKWVECVCLPGWHGPSCGVP 185
GG G K CVC GW GP C VP
Sbjct: 567 GGNGEYEKG-HCVCRHGWKGPECDVP 591
>gi|253970444 odz, odd Oz/ten-m homolog 1 isoform 1 [Homo sapiens]
Length = 2732
Score = 32.3 bits (72), Expect = 1.1
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 160 GGRGARRKWVECVCLPGWHGPSCGVP 185
GG G K CVC GW GP C VP
Sbjct: 568 GGNGEYEKG-HCVCRHGWKGPECDVP 592
>gi|169180010 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 32.3 bits (72), Expect = 1.1
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 11 MFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLV------SSFFWNNAPVTPQASPEP 64
+FC+ L +S F +S+ FP+ L S P LV +S+ + P P P+P
Sbjct: 74 LFCLHLLLSLSSPTGFSVISHSGFPQSLWSSCPVLVLFVLDLTSYSIQDHP--PWLMPQP 131
Query: 65 GGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFV 109
+L L S+ ++P P ++ HR +L + D + +
Sbjct: 132 ANSQILHVCLTSYL-AVKPKPREESQGAQHRANLRVYRDADPFLI 175
>gi|169178954 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 32.3 bits (72), Expect = 1.1
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 11 MFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLV------SSFFWNNAPVTPQASPEP 64
+FC+ L +S F +S+ FP+ L S P LV +S+ + P P P+P
Sbjct: 74 LFCLHLLLSLSSPAGFSVISHSGFPQSLWSSCPVLVLFVLDLTSYSIQDHP--PWLMPQP 131
Query: 65 GGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFV 109
+L L S+ ++P P ++ HR +L + D + +
Sbjct: 132 ANSQILHVCLTSYL-AVKPKPREESQGAQHRANLRVYRDADPFLI 175
>gi|169176365 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 32.3 bits (72), Expect = 1.1
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 11 MFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLV------SSFFWNNAPVTPQASPEP 64
+FC+ L +S F +S+ FP+ L S P LV +S+ + P P P+P
Sbjct: 74 LFCLHLLLSLSSPTGFSVISHSGFPQSLWSSCPVLVLFVLDLTSYSIQDHP--PWLMPQP 131
Query: 65 GGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFV 109
+L L S+ ++P P ++ HR +L + D + +
Sbjct: 132 ANSQILHVCLTSYL-AVKPKPREESQGAQHRANLRVYRDADPFLI 175
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 32.3 bits (72), Expect = 1.1
Identities = 34/129 (26%), Positives = 42/129 (32%), Gaps = 23/129 (17%)
Query: 35 PRELASLSPNLVSSFFWNNAPVTPQASPEPGGPDLLRTPLYSHSPLLQPLPPSKAAEELH 94
PR + P L S + P TPQ+S +P S PL +P P + A
Sbjct: 86 PRHGPARDPGLPSRRLPGSCPATPQSSGDPS----------SRRPLCRPAPREEGARGSQ 135
Query: 95 RVDLVLPEDTTEYFVRTKAGGVCFKPGTKMLERPPPGRPEEKPEGANGSSARRPPRYLLS 154
R VLP+ A RP P P G +G P L
Sbjct: 136 R---VLPQAHCRPREALPAAA----------SRPSPSSPLPPARGRDGEERGLSPALGLR 182
Query: 155 ARERTGGRG 163
R GRG
Sbjct: 183 GSLRARGRG 191
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 32.3 bits (72), Expect = 1.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 171 CVCLPGWHGPSCGVPT 186
CVC PG+ GPSCG P+
Sbjct: 202 CVCFPGYTGPSCGWPS 217
Score = 30.4 bits (67), Expect = 4.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 171 CVCLPGWHGPSCGVPT 186
C C PGW GP+C PT
Sbjct: 156 CSCEPGWGGPTCSDPT 171
>gi|212720861 tubulin tyrosine ligase-like family, member 11 a [Homo
sapiens]
Length = 800
Score = 32.0 bits (71), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 122 TKMLERPPPGRPEEKPEGANGSSARRPPRYLLSARERTGGRGA 164
T++L+RPPP P KP+ G PR + +R+ G G+
Sbjct: 168 TQVLQRPPPTLPPSKPKPVQGLCPHGKPRDKGRSCKRSSGHGS 210
>gi|89363028 tubulin tyrosine ligase-like family, member 11 b [Homo
sapiens]
Length = 538
Score = 32.0 bits (71), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 122 TKMLERPPPGRPEEKPEGANGSSARRPPRYLLSARERTGGRGA 164
T++L+RPPP P KP+ G PR + +R+ G G+
Sbjct: 168 TQVLQRPPPTLPPSKPKPVQGLCPHGKPRDKGRSCKRSSGHGS 210
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 32.0 bits (71), Expect = 1.5
Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 17/111 (15%)
Query: 54 APVTPQASPEPGGPD---------LLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDT 104
AP T A+P P + L+ L HSP P PP + + L E T
Sbjct: 227 APGTASAAPPPQSREPGKVFVCDAYLQRHLQPHSPPAPPAPPPPPPPVVPELFLAAAETT 286
Query: 105 TEYFVRTKAGGVCFKPGTKMLERPP-PG-----RPEEKPEGANGSSARRPP 149
E R F +LE P PG +P+E P A A +PP
Sbjct: 287 VELVYRCDGCEQGFSSEELLLEHQPCPGPDAAPQPQEAP--AEAPKADQPP 335
>gi|238859653 pleckstrin homology domain containing family A member
4 isoform 2 [Homo sapiens]
Length = 583
Score = 31.6 bits (70), Expect = 1.9
Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 21/119 (17%)
Query: 42 SPNLVSSFFWNNAPVTPQASPEPGGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLP 101
SP+L + + P +P + P P R P +P PP++ L R+D+ P
Sbjct: 229 SPDLFTPL---SRPPSPLSLPRPRSAPARRPP----APSGDTAPPARPHTPLSRIDVRPP 281
Query: 102 EDTTEYFVRTKAGGVCFKPGTKMLERPPPGRPEEKPEGANGSSARRPPRYLLSARERTG 160
D + P + L RPP R E G R P + R + G
Sbjct: 282 LD--------------WGPQRQTLSRPPTPRRGPPSEAGGGKPPRSPQHWSQEPRTQPG 326
>gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 31.6 bits (70), Expect = 1.9
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 54 APVTPQASPEPGGPDLLRTPLYSHSPLL--QPLPPSKAAEELHRVDLVLPEDTTEYFVRT 111
+P +A P+ G P R+ HS + L + + + H P TT +
Sbjct: 73 SPAPRRARPDLGRPWATRSAASPHSKMWLGSHLRGGEMSGDPHTDLPAHPAQTTNPELEL 132
Query: 112 KAGGVCFKPGTKMLERPPPGRP------EEKPEGANGSSARRPP 149
A +P L RP P RP EE P GA G R PP
Sbjct: 133 PADPA--QPDPAPLSRPAPPRPAHQSPAEEGPRGAAGGGPRTPP 174
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 31.6 bits (70), Expect = 1.9
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 119 KPGTKMLERPPPGRPEEKPE---GAN-GSSARRPPRYLLSARERTG--------GRGARR 166
+P + RPP G P P G N G +AR+ PR+ LSA G G GA
Sbjct: 450 RPRPRRRPRPPAGSPARSPAHSLGLNFGDAARQTPRHGLSALSAPGLPGPGQPAGPGAWA 509
Query: 167 KWVECVCLPGWHGPSCGVPTVVQ 189
++ P GP C P Q
Sbjct: 510 PPLDSPGTPSPDGPWCFSPEGAQ 532
>gi|48717285 hypothetical protein LOC389763 [Homo sapiens]
Length = 1576
Score = 31.2 bits (69), Expect = 2.5
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 58 PQASPEPG---GPDLLRT--PLYSHSPLLQPLPP 86
P+ASP P PDL+ T L+S SPL PLPP
Sbjct: 190 PKASPPPPLILSPDLITTLADLFSPSPLRDPLPP 223
>gi|27436940 reelin isoform b [Homo sapiens]
Length = 3458
Score = 31.2 bits (69), Expect = 2.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 157 ERTGGRGARRKWVECVCLPGWHGPSCGVPT 186
E G+G+ +C+C PG+ GP+C + T
Sbjct: 2134 EMCNGQGSCINGTKCICDPGYSGPTCKIST 2163
>gi|27436938 reelin isoform a [Homo sapiens]
Length = 3460
Score = 31.2 bits (69), Expect = 2.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 157 ERTGGRGARRKWVECVCLPGWHGPSCGVPT 186
E G+G+ +C+C PG+ GP+C + T
Sbjct: 2134 EMCNGQGSCINGTKCICDPGYSGPTCKIST 2163
>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
sapiens]
Length = 3312
Score = 31.2 bits (69), Expect = 2.5
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 27/81 (33%)
Query: 129 PPGRPEEKPEGA-------------NGSSARRPPRYLLSARERTGGRGA----------- 164
PPG EE P+G +GS A PP + ++A A
Sbjct: 1901 PPGSAEEAPQGLVGCIQGVWLGSTPSGSPALLPPSHRVNAEPGCVVTNACASGPCPPHAD 1960
Query: 165 -RRKW--VECVCLPGWHGPSC 182
R W C C PG++GP C
Sbjct: 1961 CRDLWQTFSCTCQPGYYGPGC 1981
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 31.2 bits (69), Expect = 2.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 125 LERPPPGRPEEKPEGANGSSARRPPRYLLSARERTGGRGA 164
++ PPP PE KP G R P R + RE GG GA
Sbjct: 1363 VDHPPPAAPERKPLGTAPHCPRLPLR--KTYRENVGGPGA 1400
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.142 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,696,374
Number of Sequences: 37866
Number of extensions: 1402338
Number of successful extensions: 5150
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 4949
Number of HSP's gapped (non-prelim): 261
length of query: 533
length of database: 18,247,518
effective HSP length: 107
effective length of query: 426
effective length of database: 14,195,856
effective search space: 6047434656
effective search space used: 6047434656
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.