PCDH18 4178

Name: PCDH18	Sequence: fasta or formatted (1135aa)		NCBI GI: 14589929
Description: protocadherin 18 precursor		Referenced in: Cadherins and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.9 56 2 C cysteine 1.3 15 1 D aspartate 6.9 78 2 E glutamate 6.9 78 2 F phenylalanine 3.5 40 2 G glycine 5.3 60 2 H histidine 3.1 35 2 I isoleucine 7.0 80 4 K lysine 3.9 44 3 L leucine 8.6 98 3 M methionine 1.9 21 1 N asparagine 5.6 63 2 P proline 5.6 64 2 Q glutamine 4.3 49 3 R arginine 4.8 55 2 S serine 10.7 122 3 T threonine 5.9 67 2 V valine 6.6 75 2 W tryptophan 0.4 4 1 Y tyrosine 2.7 31 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protocadherin 18 precursor PCDH17 0.283 protocadherin 17 precursor PCDH10 0.280 protocadherin 10 isoform 1 precursor PCDH19 0.273 protocadherin 19 isoform b PCDH19 0.272 protocadherin 19 isoform a PCDH12 0.254 protocadherin 12 precursor PCDH10 0.252 protocadherin 10 isoform 2 precursor PCDHGA4 0.206 protocadherin gamma subfamily A, 4 isoform 2 precurs... PCDHGA4 0.206 protocadherin gamma subfamily A, 4 isoform 1 precurs... PCDHGA12 0.203 protocadherin gamma subfamily A, 12 isoform 1 precurs... PCDHGA12 0.203 protocadherin gamma subfamily A, 12 isoform 2 precur... PCDHGA10 0.202 protocadherin gamma subfamily A, 10 isoform 1 precur... PCDHGA10 0.202 protocadherin gamma subfamily A, 10 isoform 2 precur... PCDHA3 0.200 protocadherin alpha 3 isoform 1 precursor PCDHA3 0.200 protocadherin alpha 3 isoform 2 precursor PCDHA1 0.199 protocadherin alpha 1 isoform 2 precursor PCDHA1 0.199 protocadherin alpha 1 isoform 1 precursor PCDHGA5 0.198 protocadherin gamma subfamily A, 5 isoform 2 precurs... PCDHGA5 0.198 protocadherin gamma subfamily A, 5 isoform 1 precurs... PCDHGA9 0.197 protocadherin gamma subfamily A, 9 isoform 1 precurs... PCDHGA9 0.197 protocadherin gamma subfamily A, 9 isoform 2 precurs... PCDHA5 0.197 protocadherin alpha 5 isoform 1 precursor PCDHA5 0.197 protocadherin alpha 5 isoform 2 precursor PCDHGA1 0.196 protocadherin gamma subfamily A, 1 isoform 1 precurs... PCDHGA1 0.196 protocadherin gamma subfamily A, 1 isoform 2 precurs... PCDHGB4 0.196 protocadherin gamma subfamily B, 4 isoform 2 precurs... PCDHGB4 0.196 protocadherin gamma subfamily B, 4 isoform 1 precurs... PCDHGA11 0.195 protocadherin gamma subfamily A, 11 isoform 2 precur... PCDHGA11 0.195 protocadherin gamma subfamily A, 11 isoform 1 precur... PCDHGA3 0.195 protocadherin gamma subfamily A, 3 isoform 1 precurs... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.