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Search of human proteins with 145580586
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|145580586 kintoun isoform 2 [Homo sapiens]
(789 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|145580586 kintoun isoform 2 [Homo sapiens] 1590 0.0
gi|145580588 kintoun isoform 1 [Homo sapiens] 1568 0.0
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 53 1e-06
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 51 5e-06
gi|8923598 NOP17 [Homo sapiens] 50 8e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 48 4e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 48 4e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 47 9e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 47 9e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 47 9e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 45 2e-04
gi|12707562 period 2 [Homo sapiens] 45 3e-04
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 45 3e-04
gi|7706501 WW domain binding protein 11 [Homo sapiens] 45 3e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 44 4e-04
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 44 6e-04
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 44 6e-04
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 44 6e-04
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 44 6e-04
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ... 44 6e-04
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 44 6e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 44 8e-04
gi|169201741 PREDICTED: hypothetical protein [Homo sapiens] 44 8e-04
gi|169201345 PREDICTED: hypothetical protein [Homo sapiens] 44 8e-04
gi|169188544 PREDICTED: hypothetical protein [Homo sapiens] 44 8e-04
gi|30795231 brain abundant, membrane attached signal protein 1 [... 43 0.001
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 43 0.001
gi|237757312 synaptojanin 1 isoform c [Homo sapiens] 42 0.003
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 42 0.003
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 42 0.003
>gi|145580586 kintoun isoform 2 [Homo sapiens]
Length = 789
Score = 1590 bits (4118), Expect = 0.0
Identities = 789/789 (100%), Positives = 789/789 (100%)
Query: 1 MAKAAASSSLEDLDLSGEEVQRLTSAFQDPEFRRMFSQYAEELTDPENRRRYEAEITALE 60
MAKAAASSSLEDLDLSGEEVQRLTSAFQDPEFRRMFSQYAEELTDPENRRRYEAEITALE
Sbjct: 1 MAKAAASSSLEDLDLSGEEVQRLTSAFQDPEFRRMFSQYAEELTDPENRRRYEAEITALE 60
Query: 61 RERGVEVRFVHPEPGHVLRTSLDGARRCFVNVCSNALVGAPSSRPGSGGDRGAAPGSHWS 120
RERGVEVRFVHPEPGHVLRTSLDGARRCFVNVCSNALVGAPSSRPGSGGDRGAAPGSHWS
Sbjct: 61 RERGVEVRFVHPEPGHVLRTSLDGARRCFVNVCSNALVGAPSSRPGSGGDRGAAPGSHWS 120
Query: 121 LPYSLAPGREYAGRSSSRYMVYDVVFHPDALALARRHEGFRQMLDATALEAVEKQFGVKL 180
LPYSLAPGREYAGRSSSRYMVYDVVFHPDALALARRHEGFRQMLDATALEAVEKQFGVKL
Sbjct: 121 LPYSLAPGREYAGRSSSRYMVYDVVFHPDALALARRHEGFRQMLDATALEAVEKQFGVKL 180
Query: 181 DRRNAKTLKAKYKGTPEAAVLRTPLPGVIPARPDGEPKGPLPDFPYPYQYPAAPGPRAPS 240
DRRNAKTLKAKYKGTPEAAVLRTPLPGVIPARPDGEPKGPLPDFPYPYQYPAAPGPRAPS
Sbjct: 181 DRRNAKTLKAKYKGTPEAAVLRTPLPGVIPARPDGEPKGPLPDFPYPYQYPAAPGPRAPS 240
Query: 241 PPEAALQPAPTEPRYSVVQRHHVDLQDYRCSRDSAPSPVPHELVITIELPLLRSAEQAAL 300
PPEAALQPAPTEPRYSVVQRHHVDLQDYRCSRDSAPSPVPHELVITIELPLLRSAEQAAL
Sbjct: 241 PPEAALQPAPTEPRYSVVQRHHVDLQDYRCSRDSAPSPVPHELVITIELPLLRSAEQAAL 300
Query: 301 EVTRKLLCLDSRKPDYRLRLSLPYPVDDGRGKAQFNKARRQLVVTLPVVLPAARREPAVA 360
EVTRKLLCLDSRKPDYRLRLSLPYPVDDGRGKAQFNKARRQLVVTLPVVLPAARREPAVA
Sbjct: 301 EVTRKLLCLDSRKPDYRLRLSLPYPVDDGRGKAQFNKARRQLVVTLPVVLPAARREPAVA 360
Query: 361 VAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEV 420
VAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEV
Sbjct: 361 VAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEV 420
Query: 421 APPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSS 480
APPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSS
Sbjct: 421 APPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSS 480
Query: 481 AGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCPPLLCNQDKETLTLLIQV 540
AGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCPPLLCNQDKETLTLLIQV
Sbjct: 481 AGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCPPLLCNQDKETLTLLIQV 540
Query: 541 PRIQPQSLQGDLNPLWYKLRFSAQDLVYSFFLQFAPENKLSTTEPVISISSNNAVIELAK 600
PRIQPQSLQGDLNPLWYKLRFSAQDLVYSFFLQFAPENKLSTTEPVISISSNNAVIELAK
Sbjct: 541 PRIQPQSLQGDLNPLWYKLRFSAQDLVYSFFLQFAPENKLSTTEPVISISSNNAVIELAK 600
Query: 601 SPESHGHWREWYYGVNNDSLELQECSNSDQLQGKEERVNEESHLTEKEYIEHCNTPTTDS 660
SPESHGHWREWYYGVNNDSLELQECSNSDQLQGKEERVNEESHLTEKEYIEHCNTPTTDS
Sbjct: 601 SPESHGHWREWYYGVNNDSLELQECSNSDQLQGKEERVNEESHLTEKEYIEHCNTPTTDS 660
Query: 661 DSSIAVKALQIDSFGLVTCFQQESLDVSQMILGKSQQPESKMQSEFIKEKSATCSNEEKD 720
DSSIAVKALQIDSFGLVTCFQQESLDVSQMILGKSQQPESKMQSEFIKEKSATCSNEEKD
Sbjct: 661 DSSIAVKALQIDSFGLVTCFQQESLDVSQMILGKSQQPESKMQSEFIKEKSATCSNEEKD 720
Query: 721 NLNESVITEEKETDGDHLSSLLNKTTVHNIPGFDSIKETNMQDGSVQVIKDHVTNCAFSF 780
NLNESVITEEKETDGDHLSSLLNKTTVHNIPGFDSIKETNMQDGSVQVIKDHVTNCAFSF
Sbjct: 721 NLNESVITEEKETDGDHLSSLLNKTTVHNIPGFDSIKETNMQDGSVQVIKDHVTNCAFSF 780
Query: 781 QNSLLYDLD 789
QNSLLYDLD
Sbjct: 781 QNSLLYDLD 789
>gi|145580588 kintoun isoform 1 [Homo sapiens]
Length = 837
Score = 1568 bits (4059), Expect = 0.0
Identities = 789/837 (94%), Positives = 789/837 (94%), Gaps = 48/837 (5%)
Query: 1 MAKAAASSSLEDLDLSGEEVQRLTSAFQDPEFRRMFSQYAEELTDPENRRRYEAEITALE 60
MAKAAASSSLEDLDLSGEEVQRLTSAFQDPEFRRMFSQYAEELTDPENRRRYEAEITALE
Sbjct: 1 MAKAAASSSLEDLDLSGEEVQRLTSAFQDPEFRRMFSQYAEELTDPENRRRYEAEITALE 60
Query: 61 RERGVEVRFVHPEPGHVLRTSLDGARRCFVNVCSNALVGAPSSRPGSGGDRGAAPGSHWS 120
RERGVEVRFVHPEPGHVLRTSLDGARRCFVNVCSNALVGAPSSRPGSGGDRGAAPGSHWS
Sbjct: 61 RERGVEVRFVHPEPGHVLRTSLDGARRCFVNVCSNALVGAPSSRPGSGGDRGAAPGSHWS 120
Query: 121 LPYSLAPGREYAGRSSSRYMVYDVVFHPDALALARRHEGFRQMLDATALEAVEKQFGVKL 180
LPYSLAPGREYAGRSSSRYMVYDVVFHPDALALARRHEGFRQMLDATALEAVEKQFGVKL
Sbjct: 121 LPYSLAPGREYAGRSSSRYMVYDVVFHPDALALARRHEGFRQMLDATALEAVEKQFGVKL 180
Query: 181 DRRNAKTLKAKYKGTPEAAVLRTPLPGVIPARPDGEPKGPLPDFPYPYQYPAAPGPRAPS 240
DRRNAKTLKAKYKGTPEAAVLRTPLPGVIPARPDGEPKGPLPDFPYPYQYPAAPGPRAPS
Sbjct: 181 DRRNAKTLKAKYKGTPEAAVLRTPLPGVIPARPDGEPKGPLPDFPYPYQYPAAPGPRAPS 240
Query: 241 PPEAALQPAPTEPRYSVVQRHHVDLQDYRCSRDSAPSPVPHELVITIELPLLRSAEQAAL 300
PPEAALQPAPTEPRYSVVQRHHVDLQDYRCSRDSAPSPVPHELVITIELPLLRSAEQAAL
Sbjct: 241 PPEAALQPAPTEPRYSVVQRHHVDLQDYRCSRDSAPSPVPHELVITIELPLLRSAEQAAL 300
Query: 301 EVTRKLLCLDSRKPDYRLRLSLPYPVDDGRGKAQFNKARRQLVVTLPVVLPAARREPAVA 360
EVTRKLLCLDSRKPDYRLRLSLPYPVDDGRGKAQFNKARRQLVVTLPVVLPAARREPAVA
Sbjct: 301 EVTRKLLCLDSRKPDYRLRLSLPYPVDDGRGKAQFNKARRQLVVTLPVVLPAARREPAVA 360
Query: 361 VAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEV 420
VAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEV
Sbjct: 361 VAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEV 420
Query: 421 APPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSS 480
APPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSS
Sbjct: 421 APPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSS 480
Query: 481 AGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCPPLLCNQDKETLTLLIQV 540
AGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCPPLLCNQDKETLTLLIQV
Sbjct: 481 AGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCPPLLCNQDKETLTLLIQV 540
Query: 541 PRIQPQSLQGDLNPLWYKLRFSAQDLVYSFFLQFAPENKLSTTEPVISISSNNAVIELAK 600
PRIQPQSLQGDLNPLWYKLRFSAQDLVYSFFLQFAPENKLSTTEPVISISSNNAVIELAK
Sbjct: 541 PRIQPQSLQGDLNPLWYKLRFSAQDLVYSFFLQFAPENKLSTTEPVISISSNNAVIELAK 600
Query: 601 SPESHGHWREWYYGVNNDSLE--------------------------------------- 621
SPESHGHWREWYYGVNNDSLE
Sbjct: 601 SPESHGHWREWYYGVNNDSLEERLFVNEENVNEFLEEVLSSPFKQSMSLTPPLIEVLQVT 660
Query: 622 ---------LQECSNSDQLQGKEERVNEESHLTEKEYIEHCNTPTTDSDSSIAVKALQID 672
LQECSNSDQLQGKEERVNEESHLTEKEYIEHCNTPTTDSDSSIAVKALQID
Sbjct: 661 DNKIQINAKLQECSNSDQLQGKEERVNEESHLTEKEYIEHCNTPTTDSDSSIAVKALQID 720
Query: 673 SFGLVTCFQQESLDVSQMILGKSQQPESKMQSEFIKEKSATCSNEEKDNLNESVITEEKE 732
SFGLVTCFQQESLDVSQMILGKSQQPESKMQSEFIKEKSATCSNEEKDNLNESVITEEKE
Sbjct: 721 SFGLVTCFQQESLDVSQMILGKSQQPESKMQSEFIKEKSATCSNEEKDNLNESVITEEKE 780
Query: 733 TDGDHLSSLLNKTTVHNIPGFDSIKETNMQDGSVQVIKDHVTNCAFSFQNSLLYDLD 789
TDGDHLSSLLNKTTVHNIPGFDSIKETNMQDGSVQVIKDHVTNCAFSFQNSLLYDLD
Sbjct: 781 TDGDHLSSLLNKTTVHNIPGFDSIKETNMQDGSVQVIKDHVTNCAFSFQNSLLYDLD 837
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 53.1 bits (126), Expect = 1e-06
Identities = 50/160 (31%), Positives = 65/160 (40%), Gaps = 21/160 (13%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPA 425
P + +G DG+A A G AGPA R E G AG+ G G P A PP
Sbjct: 603 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQG-----PAGSPG----FQGLPGPAGPPG 653
Query: 426 AAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAGRES 485
AG KPGEQ + G+P S G G G P + A G + G +
Sbjct: 654 EAG-----KPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANG-APGNDG 707
Query: 486 ARGDSSVETREESEGT------GGQRSACAMGGPGTKSGE 519
A+GD+ S+G G+R A + GP G+
Sbjct: 708 AKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGD 747
Score = 47.8 bits (112), Expect = 4e-05
Identities = 51/179 (28%), Positives = 62/179 (34%), Gaps = 21/179 (11%)
Query: 351 PAARREPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGS 410
PA R A AA P +G G A +GEAGP R +G
Sbjct: 318 PAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEG----------PQ 367
Query: 411 GVTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEP------SPGGENSPGG 464
GV G+P P AAG P Q ++ A PG P P G PGG
Sbjct: 368 GVR--GEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGG 425
Query: 465 GGSPCLSSRSLAWGSSAGRESARGDS---SVETREESEGTGGQRSACAMGGPGTKSGEP 520
P +S S G A+G+ V+ G G+R A GP G P
Sbjct: 426 PPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPP 484
Score = 45.8 bits (107), Expect = 2e-04
Identities = 50/183 (27%), Positives = 64/183 (34%), Gaps = 26/183 (14%)
Query: 357 PAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAG------- 409
P AV A + A G G A + GE GPA S G + G AG
Sbjct: 603 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQG-----LPGPAGPPGEAGK 657
Query: 410 ---SGVTTLGDPEVAPPPAAAGEERVP-------KPGEQDLSRHAGSPPGSVEEPSPGGE 459
GV GD P A GE P PG G+P + G
Sbjct: 658 PGEQGVP--GDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAP 715
Query: 460 NSPGGGGSPCLSSRSLAWGSSA--GRESARGDSSVETREESEGTGGQRSACAMGGPGTKS 517
+PG G+P L G++ G + RGD+ + + S G G R GP +
Sbjct: 716 GAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPA 775
Query: 518 GEP 520
G P
Sbjct: 776 GAP 778
Score = 43.1 bits (100), Expect = 0.001
Identities = 48/172 (27%), Positives = 54/172 (31%), Gaps = 22/172 (12%)
Query: 357 PAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGS----GV 412
PA P +G G+ G AG S DG AGA G+ G+
Sbjct: 900 PAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGP-----AGAPGTPGPQGI 954
Query: 413 TTLGDPEVAPPPAAAGEERVPK-PGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLS 471
G V P GE P PG G S E PG PG G P
Sbjct: 955 A--GQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPP--- 1009
Query: 472 SRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCP 523
+GRE A G R+ S G G R GP G P P
Sbjct: 1010 -------GESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAP 1054
Score = 42.4 bits (98), Expect = 0.002
Identities = 48/183 (26%), Positives = 62/183 (33%), Gaps = 19/183 (10%)
Query: 347 PVVLPAARREPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAG 406
P P A +P A AP A G G S +G GP + G G
Sbjct: 384 PAGNPGADGQPGAKGANGAPG-IAGAPGFPGARGPSGPQGPGGPPGPKGNSGE-----PG 437
Query: 407 AAGSGVTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGE-NSPGGG 465
A GS GD P G + P P ++ R A PG P P GE PG
Sbjct: 438 APGSK----GDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSR 493
Query: 466 GSPCLSSRSLAWGSS--------AGRESARGDSSVETREESEGTGGQRSACAMGGPGTKS 517
G P + G + AG + + G++ G G + GP K+
Sbjct: 494 GFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKT 553
Query: 518 GEP 520
G P
Sbjct: 554 GPP 556
Score = 42.0 bits (97), Expect = 0.002
Identities = 45/188 (23%), Positives = 58/188 (30%), Gaps = 27/188 (14%)
Query: 357 PAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLG 416
PA A P+ A + G G G G E G A +G
Sbjct: 942 PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMG 1001
Query: 417 DPEVAPPPAAAGEERVP-------------KPGEQDLSRHAGSP--PGSVEEPSP----- 456
P +A PP +G E P G++ + AG P PG+ P P
Sbjct: 1002 PPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAG 1061
Query: 457 ----GGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGG 512
GE P G P + AG + RGD + G G R + G
Sbjct: 1062 KSGDRGETGPAGPAGPV---GPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQG 1118
Query: 513 PGTKSGEP 520
P G P
Sbjct: 1119 PPGPPGSP 1126
Score = 41.2 bits (95), Expect = 0.004
Identities = 48/169 (28%), Positives = 59/169 (34%), Gaps = 18/169 (10%)
Query: 356 EPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGS-GVTT 414
EP AP + R G G+ R G GPA +R DG GAAG G T
Sbjct: 288 EPGSPGENGAPGQMGPR-GLPGER---GRPGAPGPAGARGNDGA-----TGAAGPPGPTG 338
Query: 415 LGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRS 474
P P A E P+ R + P G EP P G P G P + +
Sbjct: 339 PAGPPGFPGAVGAKGEAGPQG-----PRGSEGPQGVRGEPGPPG---PAGAAGPAGNPGA 390
Query: 475 LAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCP 523
+ G A G + + G G + GP SGEP P
Sbjct: 391 DGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAP 439
Score = 38.1 bits (87), Expect = 0.032
Identities = 48/182 (26%), Positives = 61/182 (33%), Gaps = 18/182 (9%)
Query: 353 ARREPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHD----TCVAGAA 408
A+ EP V P A G G G GP R G VAG
Sbjct: 447 AKGEPG-PVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPK 505
Query: 409 GSGVTTLGDPEVAPPPAAAGEERVPK----PGEQDLSRHAGS--PPGSVEEPSPGGENS- 461
G G P A P + GE P PG + L+ GS P G P P G++
Sbjct: 506 GPAGER-GSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGR 564
Query: 462 PGGGGSPCLSSRSLAWG-----SSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTK 516
PG G P ++ G +AG G+ V + G G+ GP
Sbjct: 565 PGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGP 624
Query: 517 SG 518
+G
Sbjct: 625 AG 626
Score = 37.7 bits (86), Expect = 0.042
Identities = 41/157 (26%), Positives = 53/157 (33%), Gaps = 24/157 (15%)
Query: 373 SGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPAAAGEE-R 431
+G G A G GPA + G +T AG AG V +G A P G++
Sbjct: 1042 AGPPGAPGAPGAPGPVGPAGKSGDRG--ETGPAGPAGP-VGPVGARGPAGPQGPRGDKGE 1098
Query: 432 VPKPGEQDLSRHAG--------SPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAGR 483
+ G++ + H G PPGS E P G + P G P G
Sbjct: 1099 TGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGP------------PGS 1146
Query: 484 ESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
A G + G G R GP G P
Sbjct: 1147 AGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPP 1183
Score = 35.8 bits (81), Expect = 0.16
Identities = 45/172 (26%), Positives = 50/172 (29%), Gaps = 14/172 (8%)
Query: 351 PAARREPAVAVAA--AAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAA 408
P A+ EP A A A P A +G G G G S G T GAA
Sbjct: 823 PGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGA--TGFPGAA 880
Query: 409 GSGVTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSP 468
G PP +G P P P G GE P G P
Sbjct: 881 GR----------VGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGP 930
Query: 469 CLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
S AG G + + G GQR G SGEP
Sbjct: 931 AGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEP 982
Score = 35.0 bits (79), Expect = 0.27
Identities = 40/159 (25%), Positives = 51/159 (32%), Gaps = 17/159 (10%)
Query: 372 RSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPAAAGEER 431
++G G A R G GP +R + G A G+ V PP A G
Sbjct: 552 KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVG--- 608
Query: 432 VPKPGEQDLSRHAGSPPGSV----------EEPSPGGENSPGGGGSPCLSSRSLAWGSSA 481
P +D A PPG SPG + PG G P + + G
Sbjct: 609 ---PAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQG-VP 664
Query: 482 GRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
G A G S G G + GP +G P
Sbjct: 665 GDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAP 703
Score = 34.3 bits (77), Expect = 0.46
Identities = 42/161 (26%), Positives = 55/161 (34%), Gaps = 9/161 (5%)
Query: 364 AAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAG--SGVTTLGDPEVA 421
A P+ + G DG + G GPA + + G ++ +G AG GD
Sbjct: 748 AGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKG--ESGPSGPAGPTGARGAPGDRGEP 805
Query: 422 PPPAAAGEERVP----KPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAW 477
PP AG P +PG + AG+ G P P G P G + +
Sbjct: 806 GPPGPAGFAGPPGADGQPGAKGEPGDAGA-KGDAGPPGPAGPAGPPGPIGNVGAPGAKGA 864
Query: 478 GSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSG 518
SAG A G R G G GP K G
Sbjct: 865 RGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEG 905
Score = 33.5 bits (75), Expect = 0.79
Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 9/107 (8%)
Query: 416 GDPEVAPPPAAAGEERVPKPGEQDLSRHAGSP--PGSVEEPSP-GGENSPGGGGSPCLSS 472
G+P + P G PG+ AG P PG P P G PG G P +
Sbjct: 209 GEPGASGPMGPRGPPG--PPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKG 266
Query: 473 RSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGE 519
+G + A+GD+ + G+ G+ A GP GE
Sbjct: 267 HR----GFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGE 309
Score = 33.1 bits (74), Expect = 1.0
Identities = 48/178 (26%), Positives = 58/178 (32%), Gaps = 33/178 (18%)
Query: 361 VAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGH----DTCVAGAAGS-GVTTL 415
+ A P + G G+ G AGP + G D GA GS G L
Sbjct: 667 LGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGL 726
Query: 416 ----GDPEVAPPPAAAGE--ERVPK-----PGEQDLSRHAG--SPPGSVEEPSPGGENSP 462
G+ A P G+ + PK PG+ + G PPG P GE+ P
Sbjct: 727 QGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGP 786
Query: 463 GGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
G P G A GD G G A G PG K GEP
Sbjct: 787 SGPAGP------------TGARGAPGDRGEPGPPGPAGFAGPPG--ADGQPGAK-GEP 829
Score = 31.2 bits (69), Expect = 3.9
Identities = 42/169 (24%), Positives = 50/169 (29%), Gaps = 12/169 (7%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDG--------GHDT-CVAGAAGSGVTTLG 416
P R G GQ G GP G G+D G + G
Sbjct: 125 PAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPS 184
Query: 417 DPEVAP-PPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGG-GGSPCLSSRS 474
P P PP A G + P + A P G P P G+N G G P
Sbjct: 185 GPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGER 244
Query: 475 LAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCP 523
G G G + + + G G A GP GEP P
Sbjct: 245 GPPGPQ-GARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSP 292
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 50.8 bits (120), Expect = 5e-06
Identities = 52/174 (29%), Positives = 68/174 (39%), Gaps = 39/174 (22%)
Query: 351 PAARREPAVAVAAAAPEESADRS--GTDGQACASAREGEAGPARSRAEDGGHDTCVAGAA 408
P + +P V A E DR G DG++ + G AGP+ GAA
Sbjct: 1754 PGPQGDPGVRGPAG---EKGDRGPPGLDGRSGLDGKPGAAGPSGPN-----------GAA 1799
Query: 409 GSGVTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSP 468
G GDP P GE+ +P P PPG PG PG G P
Sbjct: 1800 GKA----GDPGRDGLPGLRGEQGLPGPS---------GPPGL-----PG---KPGEDGKP 1838
Query: 469 CLSSRSLAWGSSA--GRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
L+ ++ G GR+ +GDS RE +G G+R A + GP G P
Sbjct: 1839 GLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLP 1892
Score = 37.0 bits (84), Expect = 0.071
Identities = 46/163 (28%), Positives = 57/163 (34%), Gaps = 18/163 (11%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDGGH----DTCVAGAAGSGVT-TLGDPEV 420
P S G G+ A EG GP + E G D V G A +G GD
Sbjct: 1502 PAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGP 1561
Query: 421 APPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSS 480
A P A G + GE+ PPG V PG + PG G L+ R+ G S
Sbjct: 1562 AGPRGATGVQ-----GER-------GPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDS 1609
Query: 481 AGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCP 523
G +GD G G+ G G+P P
Sbjct: 1610 -GPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLP 1651
Score = 37.0 bits (84), Expect = 0.071
Identities = 46/160 (28%), Positives = 60/160 (37%), Gaps = 21/160 (13%)
Query: 372 RSGTDGQACASAREGEAGPAR--SRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPAAAGE 429
R+G+ G + GE GP R D G GA G GD P G+
Sbjct: 1683 RNGSPGSSGPKGDRGEPGPPGPPGRLVDTG-----PGAREKGEP--GDRGQEGPRGPKGD 1735
Query: 430 ERVP-KPGEQDLSRHAGSPPGSVEEP---SPGGENSPGGGGSPCLSSRSLAWG-----SS 480
+P PGE+ + G PPG +P P GE G G P L RS G
Sbjct: 1736 PGLPGAPGERGIEGFRG-PPGPQGDPGVRGPAGEK--GDRGPPGLDGRSGLDGKPGAAGP 1792
Query: 481 AGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
+G A G + R+ G G++ GP G+P
Sbjct: 1793 SGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKP 1832
Score = 36.2 bits (82), Expect = 0.12
Identities = 39/157 (24%), Positives = 57/157 (36%), Gaps = 15/157 (9%)
Query: 361 VAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEV 420
V P G G +G+ G A G +AG G +G+P V
Sbjct: 2616 VGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPG-----LAGHKGE----MGEPGV 2666
Query: 421 APPPAAAGEERVPKP-GEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGS 479
A G+E + P G++ G P ++ G +PG GG P S + G
Sbjct: 2667 PGQSGAPGKEGLIGPKGDRGFD---GQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGP 2723
Query: 480 SA--GRESARGDSSVETREESEGTGGQRSACAMGGPG 514
G RG ++ ++ G G+R A G PG
Sbjct: 2724 PGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPG 2760
Score = 35.8 bits (81), Expect = 0.16
Identities = 42/157 (26%), Positives = 53/157 (33%), Gaps = 10/157 (6%)
Query: 366 PEESAD--RSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPP 423
P E D R G G R+GE G G D + G AG G P V P
Sbjct: 1612 PGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPG--DPGLPGKAGERGLR-GAPGVRGP 1668
Query: 424 PAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAGR 483
G++ P ++ S + P G EP P G PG +R G+
Sbjct: 1669 VGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPG--PPGRLVDTGPGAREKGEPGDRGQ 1726
Query: 484 ESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
E RG G G+R GP G+P
Sbjct: 1727 EGPRGPKG---DPGLPGAPGERGIEGFRGPPGPQGDP 1760
Score = 35.0 bits (79), Expect = 0.27
Identities = 39/136 (28%), Positives = 46/136 (33%), Gaps = 19/136 (13%)
Query: 401 DTCVAGAAGS----GVTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSP-----PGSV 451
D V+G A + TT PE P G++ +PGE L G P PG
Sbjct: 1223 DQAVSGLATALCQASFTTQPRPEPCPVYCPKGQKG--EPGEMGLRGQVGPPGDPGLPGRT 1280
Query: 452 EEPSP----GGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSA 507
P P G + G G P R S GR G + S G G R
Sbjct: 1281 GAPGPQGPPGSATAKGERGFPGADGRP----GSPGRAGNPGTPGAPGLKGSPGLPGPRGD 1336
Query: 508 CAMGGPGTKSGEPLCP 523
GP GEP P
Sbjct: 1337 PGERGPRGPKGEPGAP 1352
Score = 32.7 bits (73), Expect = 1.3
Identities = 40/148 (27%), Positives = 51/148 (34%), Gaps = 12/148 (8%)
Query: 374 GTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPAAAGEERVP 433
G+ G GE GP + E G + G GDP + PP G P
Sbjct: 1326 GSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDP 1385
Query: 434 KP-GEQDLSRHA----GSPPGSVEEPSPG-GENSPGGGGSPCLSSRSLAWG--SSAGRES 485
P G L A G P PG G +PG G P L G G++
Sbjct: 1386 GPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKG 1445
Query: 486 ARGDSSVETREESEGTGGQRSACAMGGP 513
+GDS + + G GQ + GP
Sbjct: 1446 EKGDS----EDGAPGLPGQPGSPGEQGP 1469
Score = 32.7 bits (73), Expect = 1.3
Identities = 42/161 (26%), Positives = 53/161 (32%), Gaps = 12/161 (7%)
Query: 370 ADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGS-GVT-TLGDPEVAPPPAAA 427
A R+G G ++G GP + + G G G GV LG P + P
Sbjct: 2344 AGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVV 2403
Query: 428 G-------EERVPKPGEQDLSRHAGSPPGSVEEPSP-GGENSPGGGGSPCLSSRSLAWGS 479
G + +PG R PPG P P G PG G P S G
Sbjct: 2404 GFPGQTGPRGEMGQPGPSG-ERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGD 2462
Query: 480 -SAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGE 519
G RG+ +G GQ + GP GE
Sbjct: 2463 PGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGE 2503
Score = 32.3 bits (72), Expect = 1.8
Identities = 46/185 (24%), Positives = 61/185 (32%), Gaps = 23/185 (12%)
Query: 357 PAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTC-VAGAAG-SGVTT 414
P + A P + D+ G G +G+ G R +DG G AG G
Sbjct: 2110 PGLKGAKGEPGSNGDQ-GPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPG 2168
Query: 415 LGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGG--------- 465
L P P P + P PG L+ AG S + PG PG G
Sbjct: 2169 LQGPRGPPGPVGGHGDPGP-PGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVG 2227
Query: 466 --GSPCLSSRSLAWGS--------SAGRESARGDSSVETREESEGTGGQRSACAMGGPGT 515
G P S GS G+ A G ++ G+ G + + GP
Sbjct: 2228 LPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVG 2287
Query: 516 KSGEP 520
GEP
Sbjct: 2288 PKGEP 2292
Score = 32.0 bits (71), Expect = 2.3
Identities = 46/184 (25%), Positives = 61/184 (33%), Gaps = 28/184 (15%)
Query: 351 PAARREPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGS 410
P + P +A+ P + +G G+ G AG G G G
Sbjct: 2011 PGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGE--RGEKGE 2068
Query: 411 GVTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPG--GENSP----GG 464
G+ PP G P P P SV+EP PG GE P G
Sbjct: 2069 R----GEQGRDGPPGLPGTPGPPGP---------PGPKVSVDEPGPGLSGEQGPPGLKGA 2115
Query: 465 GGSPCLSSRSLAWGSSA--GRESARGDSSVETREESEGTGGQRSACAMGGPGTKSG--EP 520
G P + G G + RG+ ++ + G G+R M GP K G P
Sbjct: 2116 KGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGER---GMAGPEGKPGLQGP 2172
Query: 521 LCPP 524
PP
Sbjct: 2173 RGPP 2176
Score = 32.0 bits (71), Expect = 2.3
Identities = 42/164 (25%), Positives = 56/164 (34%), Gaps = 14/164 (8%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPA 425
P+ +G GQA G G + GG + G G+ GD + P
Sbjct: 2288 PKGEPGPTGAPGQAVV----GLPGAKGEKGAPGGLAGDLVGEPGAK----GDRGLPGPRG 2339
Query: 426 AAGEE-RVPKPGE--QDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAG 482
GE R +PG+ +D + A P G +P G SPG G P + L G
Sbjct: 2340 EKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKG-DLGLPGLPG 2398
Query: 483 RESARGDSSVETREESEGTGGQRSACAMGGPGTKSG--EPLCPP 524
G G G + GP + G PL PP
Sbjct: 2399 APGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPP 2442
Score = 32.0 bits (71), Expect = 2.3
Identities = 41/153 (26%), Positives = 52/153 (33%), Gaps = 13/153 (8%)
Query: 374 GTDGQACASAREGEAGPARSRAEDGGH----DTCVAGAAGSGVTTLGDPEVAPPPAAAGE 429
G DG+ G GP SR E G + G G LG P P A G+
Sbjct: 2481 GEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPP---GPRGAKGD 2537
Query: 430 --ERVPKPGEQDLS-RHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAGRESA 486
ER P+ + D R PG ++ S G G G P L L G
Sbjct: 2538 MGERGPRGLDGDKGPRGDNGDPG--DKGSKGEPGDKGSAGLPGLRG-LLGPQGQPGAAGI 2594
Query: 487 RGDSSVETREESEGTGGQRSACAMGGPGTKSGE 519
GD ++ G G++ GP GE
Sbjct: 2595 PGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGE 2627
Score = 30.0 bits (66), Expect = 8.7
Identities = 31/111 (27%), Positives = 37/111 (33%), Gaps = 16/111 (14%)
Query: 419 EVAPP--PAAAGEERVP----KPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSS 472
+V PP P G P PG G P SPG +PG G+P L
Sbjct: 1267 QVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLK- 1325
Query: 473 RSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMG-GPGT--KSGEP 520
S G RGD +G G G GPG + G+P
Sbjct: 1326 ------GSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDP 1370
>gi|8923598 NOP17 [Homo sapiens]
Length = 290
Score = 50.1 bits (118), Expect = 8e-06
Identities = 63/310 (20%), Positives = 120/310 (38%), Gaps = 49/310 (15%)
Query: 41 EELTDPENRRRYEAEITALERERGVEVRFVHPEPGHVLRTSLDGARRCFVNVCSNALVGA 100
EEL ++ +A+ T E + + P+PG ++T+ + F+N+C + +
Sbjct: 25 EELLLQASKELQQAQTTRPESTQ------IQPQPGFCIKTN-SSEGKVFINICHSPSIPP 77
Query: 101 PSSRPGSGGDRGAAPG-SHWSLPYSLAPGREYAGRSSSRYMVYDVVFHPDALALARRHEG 159
P+ + + + +P SL YDV + D + +
Sbjct: 78 PADVTEEELLQMLEEDQAGFRIPMSLGEPHAELDAKGQGCTAYDVAVNSDFYRRMQNSDF 137
Query: 160 FRQMLDATALEAVEKQFGVKLDRRNAKTLKAKYKGTPEAAVLRTPLPGVIPARPDGEPKG 219
R+++ A E +E ++ ++L+ + G+ +R+ RP + G
Sbjct: 138 LRELVITIAREGLEDKYNLQLNPEWRMMKNRPFMGSISQQNIRSE------QRPRIQELG 191
Query: 220 PLPDFPYPYQYPAAPGPRAPSPPEAALQPAPTEPRYSVVQRHHVDLQDYRCSRDSAPSPV 279
L Y APG RA S PE + H++L
Sbjct: 192 DL--------YTPAPG-RAESGPE----------------KPHLNLW----------LEA 216
Query: 280 PHELVITIELPLLRSAEQAALEVTRKLLCLDSRKPDYRLRLSLPYPVDDGRGKAQFNKAR 339
P L+ ++LP L A +LE+ L + + Y L +P ++ KA F++ R
Sbjct: 217 PDLLLAEVDLPKLDGALGLSLEIGENRLVMGGPQQLYHLDAYIPLQINSHESKAAFHRKR 276
Query: 340 RQLVVTLPVV 349
+QL+V +P++
Sbjct: 277 KQLMVAMPLL 286
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 47.8 bits (112), Expect = 4e-05
Identities = 54/182 (29%), Positives = 68/182 (37%), Gaps = 37/182 (20%)
Query: 353 ARREPAVAVAAAAPEESADRS--GTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGS 410
A EP A P R G DG+ A+ G AGPA R E G G +G
Sbjct: 610 ANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG-----APGPSG- 663
Query: 411 GVTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSP-----------PGSVEEPSPGGE 459
G P PP G KPG+Q + AG+P PG E SPG +
Sbjct: 664 ---FQGLPGPPGPPGEGG-----KPGDQGVPGEAGAPGLVGPRGERGFPG--ERGSPGAQ 713
Query: 460 NSPGGGGSPCLSSRSLAWGSS--AGRESARGDSSVETREESEGTGGQRSACAMGGPGTKS 517
G G P G+S AG A+G + +G G+R A + GP
Sbjct: 714 GLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGL------QGMPGERGAAGIAGPKGDR 767
Query: 518 GE 519
G+
Sbjct: 768 GD 769
Score = 43.5 bits (101), Expect = 8e-04
Identities = 43/170 (25%), Positives = 56/170 (32%), Gaps = 26/170 (15%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPA 425
P+ + SG G+A +G AGP + E G A G + P
Sbjct: 928 PKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPG 987
Query: 426 AAGEERVP-------KPGEQDLSRHAG--SPPGSVEEP-------SPGGENSPGGGGSPC 469
GE P +PG+Q +G PPG V P PG E SPG G P
Sbjct: 988 QRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPP- 1046
Query: 470 LSSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGE 519
G +GD + G G + GP K G+
Sbjct: 1047 ---------GRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGD 1087
Score = 43.1 bits (100), Expect = 0.001
Identities = 47/157 (29%), Positives = 52/157 (33%), Gaps = 31/157 (19%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPA 425
P A G DGQ A +GEAG G +GA G G V P
Sbjct: 832 PAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGP--SGAPGPQ----GPTGVTGPKG 885
Query: 426 AAGEERVPKPGEQDLSRHAG--SPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAGR 483
A G + PG AG PPGS P P G P G P
Sbjct: 886 ARGAQG--PPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGP--------------- 928
Query: 484 ESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
+ ARGDS R G G GP + GEP
Sbjct: 929 KGARGDSGPPGRAGEPGLQGP------AGPPGEKGEP 959
Score = 42.0 bits (97), Expect = 0.002
Identities = 45/170 (26%), Positives = 55/170 (32%), Gaps = 6/170 (3%)
Query: 357 PAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDG--GHDTCVAGAAGSGVT- 413
P A A P + G G G AGP R + G G + G G+T
Sbjct: 730 PKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG 789
Query: 414 TLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGE-NSPGGGGSPCLSS 472
+G P A GE P P +R A G P P G PG G P
Sbjct: 790 PIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKG 849
Query: 473 RSLAWG--SSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
G AG +G S + G G + A GP +G P
Sbjct: 850 EQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP 899
Score = 40.0 bits (92), Expect = 0.008
Identities = 45/188 (23%), Positives = 64/188 (34%), Gaps = 22/188 (11%)
Query: 351 PAARREPAVA--VAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDG---------- 398
P EP V+ + P + G DG+A + GE GP + G
Sbjct: 227 PGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGV 286
Query: 399 -GHDTC--VAGAAGSGVTTLGDPEVAPPPAAAGEERVPKP-GEQDLSRHAG--SPPGSVE 452
GH + GA G G P V + GE P P G + L G P G+
Sbjct: 287 KGHRGYPGLDGAKGEA----GAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAG 342
Query: 453 EPSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGG 512
G+ P G P + + + G + G + E ++G G+ G
Sbjct: 343 ARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPG 402
Query: 513 PGTKSGEP 520
P SG P
Sbjct: 403 PAGASGNP 410
Score = 37.4 bits (85), Expect = 0.055
Identities = 42/165 (25%), Positives = 60/165 (36%), Gaps = 33/165 (20%)
Query: 357 PAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLG 416
P +A AP A G G +G GP + + G + +AG G
Sbjct: 416 PGAKGSAGAPG-IAGAPGFPGPRGPPGPQGATGPLGPKGQTG--EPGIAGFKGEQ----- 467
Query: 417 DPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGE-NSPGGGGSPCLSSRSL 475
P+ P PA G + P P ++ R A PG V P GE +PG G P
Sbjct: 468 GPKGEPGPA--GPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP------- 518
Query: 476 AWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
G++ G +G G+R + GP +G+P
Sbjct: 519 ------GQDGLAG---------PKGAPGERGPSGLAGPKGANGDP 548
Score = 31.2 bits (69), Expect = 3.9
Identities = 32/124 (25%), Positives = 40/124 (32%), Gaps = 21/124 (16%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDGGH----DTCVAGAAGS-------GVTT 414
P + G G+A A G +GPA +R G D AG G G T
Sbjct: 1078 PAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTG 1137
Query: 415 L----------GDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGG 464
L GD + P +G P P A PG + P P G + G
Sbjct: 1138 LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG 1197
Query: 465 GGSP 468
P
Sbjct: 1198 PAGP 1201
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 47.8 bits (112), Expect = 4e-05
Identities = 54/182 (29%), Positives = 68/182 (37%), Gaps = 37/182 (20%)
Query: 353 ARREPAVAVAAAAPEESADRS--GTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGS 410
A EP A P R G DG+ A+ G AGPA R E G G +G
Sbjct: 541 ANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG-----APGPSG- 594
Query: 411 GVTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSP-----------PGSVEEPSPGGE 459
G P PP G KPG+Q + AG+P PG E SPG +
Sbjct: 595 ---FQGLPGPPGPPGEGG-----KPGDQGVPGEAGAPGLVGPRGERGFPG--ERGSPGAQ 644
Query: 460 NSPGGGGSPCLSSRSLAWGSS--AGRESARGDSSVETREESEGTGGQRSACAMGGPGTKS 517
G G P G+S AG A+G + +G G+R A + GP
Sbjct: 645 GLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGL------QGMPGERGAAGIAGPKGDR 698
Query: 518 GE 519
G+
Sbjct: 699 GD 700
Score = 43.5 bits (101), Expect = 8e-04
Identities = 43/170 (25%), Positives = 56/170 (32%), Gaps = 26/170 (15%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPA 425
P+ + SG G+A +G AGP + E G A G + P
Sbjct: 859 PKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPG 918
Query: 426 AAGEERVP-------KPGEQDLSRHAG--SPPGSVEEP-------SPGGENSPGGGGSPC 469
GE P +PG+Q +G PPG V P PG E SPG G P
Sbjct: 919 QRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPP- 977
Query: 470 LSSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGE 519
G +GD + G G + GP K G+
Sbjct: 978 ---------GRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGD 1018
Score = 43.1 bits (100), Expect = 0.001
Identities = 47/157 (29%), Positives = 52/157 (33%), Gaps = 31/157 (19%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPA 425
P A G DGQ A +GEAG G +GA G G V P
Sbjct: 763 PAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGP--SGAPGPQ----GPTGVTGPKG 816
Query: 426 AAGEERVPKPGEQDLSRHAG--SPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAGR 483
A G + PG AG PPGS P P G P G P
Sbjct: 817 ARGAQG--PPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGP--------------- 859
Query: 484 ESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
+ ARGDS R G G GP + GEP
Sbjct: 860 KGARGDSGPPGRAGEPGLQGP------AGPPGEKGEP 890
Score = 42.0 bits (97), Expect = 0.002
Identities = 45/170 (26%), Positives = 55/170 (32%), Gaps = 6/170 (3%)
Query: 357 PAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDG--GHDTCVAGAAGSGVT- 413
P A A P + G G G AGP R + G G + G G+T
Sbjct: 661 PKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG 720
Query: 414 TLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGE-NSPGGGGSPCLSS 472
+G P A GE P P +R A G P P G PG G P
Sbjct: 721 PIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKG 780
Query: 473 RSLAWG--SSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
G AG +G S + G G + A GP +G P
Sbjct: 781 EQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP 830
Score = 40.0 bits (92), Expect = 0.008
Identities = 45/188 (23%), Positives = 64/188 (34%), Gaps = 22/188 (11%)
Query: 351 PAARREPAVA--VAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDG---------- 398
P EP V+ + P + G DG+A + GE GP + G
Sbjct: 158 PGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGV 217
Query: 399 -GHDTC--VAGAAGSGVTTLGDPEVAPPPAAAGEERVPKP-GEQDLSRHAG--SPPGSVE 452
GH + GA G G P V + GE P P G + L G P G+
Sbjct: 218 KGHRGYPGLDGAKGEA----GAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAG 273
Query: 453 EPSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGG 512
G+ P G P + + + G + G + E ++G G+ G
Sbjct: 274 ARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPG 333
Query: 513 PGTKSGEP 520
P SG P
Sbjct: 334 PAGASGNP 341
Score = 37.4 bits (85), Expect = 0.055
Identities = 42/165 (25%), Positives = 60/165 (36%), Gaps = 33/165 (20%)
Query: 357 PAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLG 416
P +A AP A G G +G GP + + G + +AG G
Sbjct: 347 PGAKGSAGAPG-IAGAPGFPGPRGPPGPQGATGPLGPKGQTG--EPGIAGFKGEQ----- 398
Query: 417 DPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGE-NSPGGGGSPCLSSRSL 475
P+ P PA G + P P ++ R A PG V P GE +PG G P
Sbjct: 399 GPKGEPGPA--GPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP------- 449
Query: 476 AWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
G++ G +G G+R + GP +G+P
Sbjct: 450 ------GQDGLAG---------PKGAPGERGPSGLAGPKGANGDP 479
Score = 31.2 bits (69), Expect = 3.9
Identities = 32/124 (25%), Positives = 40/124 (32%), Gaps = 21/124 (16%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDGGH----DTCVAGAAGS-------GVTT 414
P + G G+A A G +GPA +R G D AG G G T
Sbjct: 1009 PAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTG 1068
Query: 415 L----------GDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGG 464
L GD + P +G P P A PG + P P G + G
Sbjct: 1069 LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG 1128
Query: 465 GGSP 468
P
Sbjct: 1129 PAGP 1132
Score = 30.8 bits (68), Expect = 5.1
Identities = 43/185 (23%), Positives = 56/185 (30%), Gaps = 26/185 (14%)
Query: 355 REPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTT 414
R+P P + D G G GE GP R + G T
Sbjct: 29 RQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGT 88
Query: 415 LGDPEVAPPPAAAGEERV-------------PKPGEQDLSRHAG--------SPPGSVEE 453
G+P PP G + K G L G PPG
Sbjct: 89 PGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGA 148
Query: 454 PSPGG-ENSPGGGGSPCLSSRSLAWG--SSAGRESARGDSSVETREESEGTGGQRSACAM 510
P P G + +PG G P +S G G+ G++ + G G + A
Sbjct: 149 PGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQG--AR 206
Query: 511 GGPGT 515
G PGT
Sbjct: 207 GFPGT 211
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 46.6 bits (109), Expect = 9e-05
Identities = 55/193 (28%), Positives = 68/193 (35%), Gaps = 19/193 (9%)
Query: 351 PAARREPAVAVAAAAPEESADRSGTDGQACASAR--EGEAGPARSRAEDGGHDTCVAGAA 408
P A E A P R T + AR G+ GP + DG
Sbjct: 873 PGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGP 932
Query: 409 GSGVTTLGDPEVAPPPAAAGEERVP----KPGEQDLSRHAGSP-PGSVEEPS-PGGENSP 462
+G P PP G++ +P + GE G P PG V P P GE P
Sbjct: 933 QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP 992
Query: 463 -GGGGSPCLSSRSLAWG--SSAGRESARGDSSVETREESEGTGGQRS-------ACAMGG 512
G G P G +AG+E A+GD + +G G R A G
Sbjct: 993 IGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGA 1052
Query: 513 PGTKSGE-PLCPP 524
PG K GE P PP
Sbjct: 1053 PGLKGGEGPQGPP 1065
Score = 42.7 bits (99), Expect = 0.001
Identities = 46/167 (27%), Positives = 58/167 (34%), Gaps = 21/167 (12%)
Query: 356 EPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGH----DTCVAGAAGSG 411
EP A P E+ G G +GEAGP + G D G G
Sbjct: 1268 EPGEAGNPGPPGEA----GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGP- 1322
Query: 412 VTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLS 471
V GDP P AG++ V +D PPG E P G PG G P
Sbjct: 1323 VGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP--PGKRGPP--- 1377
Query: 472 SRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSG 518
+AG E +G+ + +EG G+ GP K G
Sbjct: 1378 -------GAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1417
Score = 39.3 bits (90), Expect = 0.014
Identities = 42/162 (25%), Positives = 53/162 (32%), Gaps = 8/162 (4%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPA 425
P +G G G GP DG + + GV G+P A P
Sbjct: 1217 PPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1276
Query: 426 AAGEERVPKP-GEQDLSRHAGSPPGSVEEP---SPGGENSPGGGGSPC---LSSRSLAWG 478
GE V P GE+ AG PPG+ P P G++ P G P
Sbjct: 1277 PPGEAGVGGPKGERGEKGEAG-PPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP 1335
Query: 479 SSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
AG++ GD + G G GP K G P
Sbjct: 1336 GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP 1377
Score = 38.1 bits (87), Expect = 0.032
Identities = 54/195 (27%), Positives = 66/195 (33%), Gaps = 39/195 (20%)
Query: 351 PAARREPAVAVAAAAPEESADR--SGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAA 408
P + P A AP E + +G DG G AGPA S EDG D G
Sbjct: 1089 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDG--DKGEIGEP 1146
Query: 409 GSGVTTLGDPEVAPP-----------PAAAGEERVPKP-GEQDLSRHAG--------SPP 448
G + E PP P AG + P P G+Q + G PP
Sbjct: 1147 GQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPP 1206
Query: 449 GSV---EEPSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQR 505
G + P P GE G P G RG + +G G
Sbjct: 1207 GPIGLQGLPGPPGEKGENGDVGPM---------GPPGPPGPRGPQGPNGADGPQGPPG-- 1255
Query: 506 SACAMGGPGTKSGEP 520
S ++GG G K GEP
Sbjct: 1256 SVGSVGGVGEK-GEP 1269
Score = 38.1 bits (87), Expect = 0.032
Identities = 48/190 (25%), Positives = 62/190 (32%), Gaps = 35/190 (18%)
Query: 357 PAVAVAAAAPEESADRS--GTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTT 414
P A A +P E D+ G GQ + +GE GP G G AG
Sbjct: 1125 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQG--PVGAPGIAG----- 1177
Query: 415 LGDPEVAP--------------------PPAAAGEERVP-KPGEQDLSRHAGSPPGSVEE 453
GD E P PP G + +P PGE+ + G P G
Sbjct: 1178 -GDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVG-PMGPPGP 1235
Query: 454 PSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTG---GQRSACAM 510
P P G P G P S+ G + G++ G G G+R
Sbjct: 1236 PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1295
Query: 511 GGPGTKSGEP 520
GP +G P
Sbjct: 1296 AGPPGAAGPP 1305
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 46.6 bits (109), Expect = 9e-05
Identities = 55/193 (28%), Positives = 68/193 (35%), Gaps = 19/193 (9%)
Query: 351 PAARREPAVAVAAAAPEESADRSGTDGQACASAR--EGEAGPARSRAEDGGHDTCVAGAA 408
P A E A P R T + AR G+ GP + DG
Sbjct: 822 PGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGP 881
Query: 409 GSGVTTLGDPEVAPPPAAAGEERVP----KPGEQDLSRHAGSP-PGSVEEPS-PGGENSP 462
+G P PP G++ +P + GE G P PG V P P GE P
Sbjct: 882 QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP 941
Query: 463 -GGGGSPCLSSRSLAWG--SSAGRESARGDSSVETREESEGTGGQRS-------ACAMGG 512
G G P G +AG+E A+GD + +G G R A G
Sbjct: 942 IGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGA 1001
Query: 513 PGTKSGE-PLCPP 524
PG K GE P PP
Sbjct: 1002 PGLKGGEGPQGPP 1014
Score = 42.7 bits (99), Expect = 0.001
Identities = 46/167 (27%), Positives = 58/167 (34%), Gaps = 21/167 (12%)
Query: 356 EPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGH----DTCVAGAAGSG 411
EP A P E+ G G +GEAGP + G D G G
Sbjct: 1217 EPGEAGNPGPPGEA----GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGP- 1271
Query: 412 VTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLS 471
V GDP P AG++ V +D PPG E P G PG G P
Sbjct: 1272 VGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP--PGKRGPP--- 1326
Query: 472 SRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSG 518
+AG E +G+ + +EG G+ GP K G
Sbjct: 1327 -------GAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1366
Score = 39.3 bits (90), Expect = 0.014
Identities = 42/162 (25%), Positives = 53/162 (32%), Gaps = 8/162 (4%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPA 425
P +G G G GP DG + + GV G+P A P
Sbjct: 1166 PPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1225
Query: 426 AAGEERVPKP-GEQDLSRHAGSPPGSVEEP---SPGGENSPGGGGSPC---LSSRSLAWG 478
GE V P GE+ AG PPG+ P P G++ P G P
Sbjct: 1226 PPGEAGVGGPKGERGEKGEAG-PPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP 1284
Query: 479 SSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
AG++ GD + G G GP K G P
Sbjct: 1285 GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP 1326
Score = 38.1 bits (87), Expect = 0.032
Identities = 54/195 (27%), Positives = 66/195 (33%), Gaps = 39/195 (20%)
Query: 351 PAARREPAVAVAAAAPEESADR--SGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAA 408
P + P A AP E + +G DG G AGPA S EDG D G
Sbjct: 1038 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDG--DKGEIGEP 1095
Query: 409 GSGVTTLGDPEVAPP-----------PAAAGEERVPKP-GEQDLSRHAG--------SPP 448
G + E PP P AG + P P G+Q + G PP
Sbjct: 1096 GQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPP 1155
Query: 449 GSV---EEPSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQR 505
G + P P GE G P G RG + +G G
Sbjct: 1156 GPIGLQGLPGPPGEKGENGDVGPM---------GPPGPPGPRGPQGPNGADGPQGPPG-- 1204
Query: 506 SACAMGGPGTKSGEP 520
S ++GG G K GEP
Sbjct: 1205 SVGSVGGVGEK-GEP 1218
Score = 38.1 bits (87), Expect = 0.032
Identities = 48/190 (25%), Positives = 62/190 (32%), Gaps = 35/190 (18%)
Query: 357 PAVAVAAAAPEESADRS--GTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTT 414
P A A +P E D+ G GQ + +GE GP G G AG
Sbjct: 1074 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQG--PVGAPGIAG----- 1126
Query: 415 LGDPEVAP--------------------PPAAAGEERVP-KPGEQDLSRHAGSPPGSVEE 453
GD E P PP G + +P PGE+ + G P G
Sbjct: 1127 -GDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVG-PMGPPGP 1184
Query: 454 PSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTG---GQRSACAM 510
P P G P G P S+ G + G++ G G G+R
Sbjct: 1185 PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1244
Query: 511 GGPGTKSGEP 520
GP +G P
Sbjct: 1245 AGPPGAAGPP 1254
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 46.6 bits (109), Expect = 9e-05
Identities = 55/193 (28%), Positives = 68/193 (35%), Gaps = 19/193 (9%)
Query: 351 PAARREPAVAVAAAAPEESADRSGTDGQACASAR--EGEAGPARSRAEDGGHDTCVAGAA 408
P A E A P R T + AR G+ GP + DG
Sbjct: 861 PGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGP 920
Query: 409 GSGVTTLGDPEVAPPPAAAGEERVP----KPGEQDLSRHAGSP-PGSVEEPS-PGGENSP 462
+G P PP G++ +P + GE G P PG V P P GE P
Sbjct: 921 QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP 980
Query: 463 -GGGGSPCLSSRSLAWG--SSAGRESARGDSSVETREESEGTGGQRS-------ACAMGG 512
G G P G +AG+E A+GD + +G G R A G
Sbjct: 981 IGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGA 1040
Query: 513 PGTKSGE-PLCPP 524
PG K GE P PP
Sbjct: 1041 PGLKGGEGPQGPP 1053
Score = 42.7 bits (99), Expect = 0.001
Identities = 46/167 (27%), Positives = 58/167 (34%), Gaps = 21/167 (12%)
Query: 356 EPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGH----DTCVAGAAGSG 411
EP A P E+ G G +GEAGP + G D G G
Sbjct: 1256 EPGEAGNPGPPGEA----GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGP- 1310
Query: 412 VTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLS 471
V GDP P AG++ V +D PPG E P G PG G P
Sbjct: 1311 VGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP--PGKRGPP--- 1365
Query: 472 SRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSG 518
+AG E +G+ + +EG G+ GP K G
Sbjct: 1366 -------GAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1405
Score = 39.3 bits (90), Expect = 0.014
Identities = 42/162 (25%), Positives = 53/162 (32%), Gaps = 8/162 (4%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPA 425
P +G G G GP DG + + GV G+P A P
Sbjct: 1205 PPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1264
Query: 426 AAGEERVPKP-GEQDLSRHAGSPPGSVEEP---SPGGENSPGGGGSPC---LSSRSLAWG 478
GE V P GE+ AG PPG+ P P G++ P G P
Sbjct: 1265 PPGEAGVGGPKGERGEKGEAG-PPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP 1323
Query: 479 SSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
AG++ GD + G G GP K G P
Sbjct: 1324 GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP 1365
Score = 38.1 bits (87), Expect = 0.032
Identities = 54/195 (27%), Positives = 66/195 (33%), Gaps = 39/195 (20%)
Query: 351 PAARREPAVAVAAAAPEESADR--SGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAA 408
P + P A AP E + +G DG G AGPA S EDG D G
Sbjct: 1077 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDG--DKGEIGEP 1134
Query: 409 GSGVTTLGDPEVAPP-----------PAAAGEERVPKP-GEQDLSRHAG--------SPP 448
G + E PP P AG + P P G+Q + G PP
Sbjct: 1135 GQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPP 1194
Query: 449 GSV---EEPSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQR 505
G + P P GE G P G RG + +G G
Sbjct: 1195 GPIGLQGLPGPPGEKGENGDVGPM---------GPPGPPGPRGPQGPNGADGPQGPPG-- 1243
Query: 506 SACAMGGPGTKSGEP 520
S ++GG G K GEP
Sbjct: 1244 SVGSVGGVGEK-GEP 1257
Score = 38.1 bits (87), Expect = 0.032
Identities = 48/190 (25%), Positives = 62/190 (32%), Gaps = 35/190 (18%)
Query: 357 PAVAVAAAAPEESADRS--GTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTT 414
P A A +P E D+ G GQ + +GE GP G G AG
Sbjct: 1113 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQG--PVGAPGIAG----- 1165
Query: 415 LGDPEVAP--------------------PPAAAGEERVP-KPGEQDLSRHAGSPPGSVEE 453
GD E P PP G + +P PGE+ + G P G
Sbjct: 1166 -GDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVG-PMGPPGP 1223
Query: 454 PSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTG---GQRSACAM 510
P P G P G P S+ G + G++ G G G+R
Sbjct: 1224 PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1283
Query: 511 GGPGTKSGEP 520
GP +G P
Sbjct: 1284 AGPPGAAGPP 1293
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 45.4 bits (106), Expect = 2e-04
Identities = 48/167 (28%), Positives = 60/167 (35%), Gaps = 21/167 (12%)
Query: 357 PAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLG 416
P +A +P E + +G G A G+ G + E G G G G G
Sbjct: 788 PGIAGPRGSPGERGE-TGPPGPAGFPGAPGQNGEPGGKGERGA-----PGEKGEG----G 837
Query: 417 DPEVAPPPAAAGEERVPKPGEQDLSRHAGSP--------PGSVEEPSPGGENSPGGGGSP 468
P VA PP +G PG Q + GSP PG+ P P G N G P
Sbjct: 838 PPGVAGPPGGSGP--AGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGP 895
Query: 469 CLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQR-SACAMGGPG 514
S AG A G V + G G++ S A G PG
Sbjct: 896 SGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPG 942
Score = 43.9 bits (102), Expect = 6e-04
Identities = 44/162 (27%), Positives = 62/162 (38%), Gaps = 10/162 (6%)
Query: 365 APEESADRSGTDGQACAS--AREGEAGPARSRAEDG-GHDTCVAGAAG-SGVTTLGDPEV 420
AP ++ +R G G + GE GP G G D G G G+ L P
Sbjct: 589 APGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGL--PGT 646
Query: 421 APPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSS 480
PP G+ +PG + + G+P G + +PG PG G+P L + G
Sbjct: 647 GGPPGENGKPG--EPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPE 704
Query: 481 AGRESA--RGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
G+ +A G +G G+R GP GEP
Sbjct: 705 GGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEP 746
Score = 39.3 bits (90), Expect = 0.014
Identities = 45/176 (25%), Positives = 54/176 (30%), Gaps = 24/176 (13%)
Query: 351 PAARREPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGS 410
P + P +A A P R G G R+G G R E+G GA G+
Sbjct: 995 PGPQGLPGLAGTAGEP----GRDGNPGSDGLPGRDGSPGGKGDRGENGS-----PGAPGA 1045
Query: 411 GVTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCL 470
P PP G P + R P G P P G G P
Sbjct: 1046 -------PGHPGPPGPVG------PAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRG 1092
Query: 471 SSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGE--PLCPP 524
+AG + RG S G GQ+ A GP G P PP
Sbjct: 1093 DKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPP 1148
Score = 38.9 bits (89), Expect = 0.019
Identities = 48/159 (30%), Positives = 58/159 (36%), Gaps = 26/159 (16%)
Query: 374 GTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPAAAGEE-RV 432
G G+ A G AGP E G AG G+ P A P AAGE R
Sbjct: 480 GAAGERGAPGFRGPAGPNGIPGEKGP-----AGERGA-------PGPAGPRGAAGEPGRD 527
Query: 433 PKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSV 492
PG + GSP G + PG S G G P S G+ G
Sbjct: 528 GVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPS----GPRGQPGVMGFPGP 583
Query: 493 ETREESEGTGGQRSACAMGGPGT-----KSGE--PLCPP 524
+ + + G G+R GGPG K+GE P PP
Sbjct: 584 KGNDGAPGKNGERG--GPGGPGPQGPPGKNGETGPQGPP 620
Score = 37.7 bits (86), Expect = 0.042
Identities = 45/168 (26%), Positives = 53/168 (31%), Gaps = 19/168 (11%)
Query: 360 AVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTC-VAGAAGSGVTT--LG 416
A P +A G G G GP + E GG V G G T +G
Sbjct: 709 AAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIG 768
Query: 417 DPEVAPPPAAAGEERVP----------KPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGG 466
P A P GE P PGE R PPG P G+N GG
Sbjct: 769 PPGPAGQPGDKGEGGAPGLPGIAGPRGSPGE----RGETGPPGPAGFPGAPGQNGEPGGK 824
Query: 467 SPCLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPG 514
+ G G G S +G G+R + GGPG
Sbjct: 825 GERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERG--SPGGPG 870
Score = 35.4 bits (80), Expect = 0.21
Identities = 41/176 (23%), Positives = 52/176 (29%), Gaps = 35/176 (19%)
Query: 373 SGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPAAAGEERV 432
+G+ G A + GE GP G + G +G + P G
Sbjct: 356 AGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGP 415
Query: 433 PKP----GEQDLSRHAGSPP--GSVEEPSPGGENS----------------------PGG 464
P P G L AG P G+ EP P GE PG
Sbjct: 416 PGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGA 475
Query: 465 GGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
G P G RG + +G G+R A GP +GEP
Sbjct: 476 NGLP-------GAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEP 524
Score = 35.0 bits (79), Expect = 0.27
Identities = 50/192 (26%), Positives = 60/192 (31%), Gaps = 27/192 (14%)
Query: 351 PAARREPAVAVAAAAPEESADRS--GTDGQACASAREGEAGPARSRAEDGGHDTCVAGAA 408
P EP AP E + G G S G GP + E G GAA
Sbjct: 815 PGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGG--PGAA 872
Query: 409 G-SGVTTL----------------GDPEVAPPPAAAGEERVP-KPGEQDLSRHAGSPPGS 450
G G L G P PP AG P PG AG P
Sbjct: 873 GFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPG-- 930
Query: 451 VEEPSPGGENSPGGGGSPCLSSRSLAWGSSA--GRESARGDSSVETREESEGTGGQRSAC 508
E+ SPG + PG G ++ + A G + G RG + + G G
Sbjct: 931 -EKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLS 989
Query: 509 AMGGPGTKSGEP 520
GP G P
Sbjct: 990 GERGPPGPQGLP 1001
Score = 35.0 bits (79), Expect = 0.27
Identities = 47/162 (29%), Positives = 57/162 (35%), Gaps = 39/162 (24%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDGGH-------DTCVAGAAG-SGVTTL-G 416
P A +SG G++ + G GPA SR G +T GAAG G G
Sbjct: 1054 PVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPG 1113
Query: 417 DPEVAPPPAAAGEE-----------RVP-----KPGEQDLSRHAG--SPPGSV------- 451
+P P AG++ R P PG+ S H G PPG
Sbjct: 1114 NPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERG 1173
Query: 452 EEPSPGGENSPG-----GGGSPCLSSRSLAWGSSAGRESARG 488
E SPG PG G PC A + G E A G
Sbjct: 1174 SEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGG 1215
Score = 34.7 bits (78), Expect = 0.35
Identities = 51/178 (28%), Positives = 62/178 (34%), Gaps = 33/178 (18%)
Query: 351 PAARREPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGS 410
P R P + AA A G DG + + G GP + G GA G
Sbjct: 305 PGERGRPGLPGAAGA-------RGNDGARGSDGQPGPPGPPGTAGFPGS-----PGAKGE 352
Query: 411 GVTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGS--PPGSVE-EPSPGGENSPGGGGS 467
V G P P GE PG Q HAG+ PPG SPGG+ G G
Sbjct: 353 -VGPAGSPGSNGAPGQRGE-----PGPQG---HAGAQGPPGPPGINGSPGGKGEMGPAGI 403
Query: 468 PCLSSRSLAWG-----SSAGRESARGDSSVETREESEGTGGQR----SACAMGGPGTK 516
P A G + G RG + + ++G G R A G PG K
Sbjct: 404 PGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAK 461
Score = 32.3 bits (72), Expect = 1.8
Identities = 43/162 (26%), Positives = 55/162 (33%), Gaps = 11/162 (6%)
Query: 366 PEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPP-- 423
P+ A G G + GE GP G + G AG G PP
Sbjct: 661 PKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPG-----LRGGAGPPGPEGGKGAAGPPGP 715
Query: 424 PAAAGEERVP-KPGEQDLSRHAGSPPGSVEEPS-PGGENSPGGGGSPCLSSRSLAWGSSA 481
P AAG + PGE+ G P G EP PG + PG G P + + A
Sbjct: 716 PGAAGTPGLQGMPGERGGLGSPG-PKGDKGEPGGPGADGVPGKDG-PRGPTGPIGPPGPA 773
Query: 482 GRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCP 523
G+ +G+ G G GP +G P P
Sbjct: 774 GQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAP 815
Score = 30.0 bits (66), Expect = 8.7
Identities = 43/181 (23%), Positives = 54/181 (29%), Gaps = 24/181 (13%)
Query: 351 PAARREPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAG- 409
P A P P+ G G+ G+ G S G ++C G
Sbjct: 92 PTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNY 151
Query: 410 ----------SGVTT---LGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSP 456
SGV G P A PP PG S H GS PGS P
Sbjct: 152 SPQYDSYDVKSGVAVGGLAGYPGPAGPPGP--------PGPPGTSGHPGS-PGSPGYQGP 202
Query: 457 GGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGG-PGT 515
GE G P ++ AG++ G G G + + G PG
Sbjct: 203 PGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGM 262
Query: 516 K 516
K
Sbjct: 263 K 263
>gi|12707562 period 2 [Homo sapiens]
Length = 1255
Score = 45.1 bits (105), Expect = 3e-04
Identities = 79/323 (24%), Positives = 111/323 (34%), Gaps = 28/323 (8%)
Query: 194 GTPEAAVLRTPLPGVIPAR--PDGEPKGPLPDFPYPYQYPAAPG-PRAPSPPEAALQPAP 250
G P +A R PL G+ P + P P+P PAA P P+P A PAP
Sbjct: 814 GGPVSA--RPPLVGLNATAWSPSDTSQSSCPAVPFPAPVPAAYSLPVFPAPGTVAAPPAP 871
Query: 251 TEPRYSVVQRHHVDLQDYRCSRDSAPSPVPHELVITIELPLLRSAEQAALEVTRKLLCLD 310
++V VDLQ ++ + P P P V+ LP S + +
Sbjct: 872 PHASFTV-PAVPVDLQ-HQFAVQPPPFPAPLAPVMAFMLPSY-SFPSGTPNLPQAFFPSQ 928
Query: 311 SRKPDYRLRLSLPYPVDDGRGKAQFNKARRQLVVTLPVVLPAARREPAVAVAAAAPEESA 370
+ P + P + +Q R + P PA R P A+ A+P
Sbjct: 929 PQFPSH------PTLTSEMASASQPEFPSRTSIPRQPCACPATRATPPSAMGRASPPLFQ 982
Query: 371 DRSGTDGQA-CASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAP-----PP 424
RS + Q E G + G +T GA T+ AP P
Sbjct: 983 SRSSSPLQLNLLQLEEAPEGGTGAMGTTGATETAAVGADCKPGTSRDQQPKAPLTRDEPS 1042
Query: 425 AAAGEERVPKPG-------EQDLSRHAGSPPG-SVEEPSPGGENSPGGGGSPCLSSRSLA 476
+ + +DL +GS S+ S G + SP G GS S S
Sbjct: 1043 DTQNSDALSTSSGLLNLLLNEDLCSASGSAASESLGSGSLGCDASPSGAGSSDTSHTSKY 1102
Query: 477 WGSSAGRESARGDSSVETREESE 499
+GS E+ EESE
Sbjct: 1103 FGSIDSSENNHKAKMNTGMEESE 1125
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 44.7 bits (104), Expect = 3e-04
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 441 SRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEG 500
+R SPP S G + PG GG C +RS AWG A A G +
Sbjct: 48 ARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRA 107
Query: 501 TGGQRSACA--MGGPGTKSGEP 520
G R+A PGT G P
Sbjct: 108 PGRGRAAATRRSPAPGTARGSP 129
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 44.7 bits (104), Expect = 3e-04
Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 35/205 (17%)
Query: 201 LRTPLPGVIP-----ARPDGEPKGPLPDFPYPYQYPAAPGPRAPSPPEAALQPAPTEPRY 255
LR PLP ++P RP G P GP P P P P P PR P P + P PR
Sbjct: 450 LRGPLPRLLPPGPPPGRPPGPPPGPPPGLP-PGPPPRGPPPRLPPPAPPGIPP----PRP 504
Query: 256 SVVQRHHVDLQDYRCSRDSAPSPVPHELVITIELPLL---RSAEQAALEVTRKLLCLDSR 312
+++ V P+P+P+ V++ L+ ++ + +A + +K S
Sbjct: 505 GMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPNLIQRPKADDTSAATIEKKATATISA 564
Query: 313 KPDYRLRLSLPYPVDDGRGKAQFNKARRQLVVTLPVVLPAARREPAVAVAAAAPEESADR 372
KP Q + ++ +P L R A AAP+ ++
Sbjct: 565 KP-------------------QITNPKAEITRFVPTALRVRRENKG---ATAAPQRKSED 602
Query: 373 SGTDGQACASAREGEAGPARSRAED 397
A A+ + G + P + +D
Sbjct: 603 DSAVPLAKAAPKSGPSVPVSVQTKD 627
Score = 34.7 bits (78), Expect = 0.35
Identities = 23/60 (38%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 194 GTPEAAVLRTPLPGVIPARPDGEPKGPLPDFPYPYQYPAAPGPRAPSPPEAALQPAPTEP 253
G P A LR P P P G P GP P P + P PG R P P P P P
Sbjct: 414 GPPPAPPLRPPGP------PTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRP 467
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 44.3 bits (103), Expect = 4e-04
Identities = 45/170 (26%), Positives = 60/170 (35%), Gaps = 13/170 (7%)
Query: 351 PAARREPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGS 410
P EP + P +R G G++ S G GP +DG G+ G
Sbjct: 1287 PGEAGEPGLPGEGGPPGPKGER-GEKGESGPSGAAGPPGPKGPPGDDGPK-----GSPGP 1340
Query: 411 GVTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCL 470
V GDP P AG++ P D PG EP P G PG G P
Sbjct: 1341 -VGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSG--PPGKRGPPGP 1397
Query: 471 SSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
+ G + A+G++ +E G G + A GP G P
Sbjct: 1398 AGPE----GRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIP 1443
Score = 40.0 bits (92), Expect = 0.008
Identities = 47/158 (29%), Positives = 51/158 (32%), Gaps = 36/158 (22%)
Query: 374 GTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPAAAGEERVP 433
G G GE GP R EDG G G G GDP PP G+ VP
Sbjct: 817 GFKGDMGIKGDRGEIGPPGPRGEDGPE-----GPKGRGGPN-GDPGPLGPPGEKGKLGVP 870
Query: 434 ----KPGEQDLSRHAGSPPGSVEEPS-PGGENSPGGGGSPCLSSRSLAWGSSAGRESARG 488
PG Q P GS+ P PG GG G+P G RG
Sbjct: 871 GLPGYPGRQ-------GPKGSIGFPGFPGANGEKGGRGTP----------GKPGPRGQRG 913
Query: 489 DSSVETREESEGTGGQRSACAMGGPGTKSG--EPLCPP 524
+ G G R GP SG P PP
Sbjct: 914 PTG------PRGERGPRGITGKPGPKGNSGGDGPAGPP 945
Score = 39.3 bits (90), Expect = 0.014
Identities = 48/159 (30%), Positives = 61/159 (38%), Gaps = 15/159 (9%)
Query: 374 GTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGS-GVTTLGDPEVAP-PPAAAGEER 431
G G G AGP + E G AG G G T P+ AP P G
Sbjct: 1384 GPSGPPGKRGPPGPAGPEGRQGEKGAKGE--AGLEGPPGKTGPIGPQGAPGKPGPDGLRG 1441
Query: 432 VPKP-GEQDLSRHAG--SPPGSVEEPS-PG--GENSPGGG-GSPCLSSRSLAWGSSAGRE 484
+P P GEQ L G PPG + P PG G++ P G G P L + G +
Sbjct: 1442 IPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGL----IGLIGPPGEQ 1497
Query: 485 SARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCP 523
+GD + + S G G++ GP G P P
Sbjct: 1498 GEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLP 1536
Score = 37.7 bits (86), Expect = 0.042
Identities = 40/137 (29%), Positives = 47/137 (34%), Gaps = 19/137 (13%)
Query: 386 GEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAG 445
G GPA S E G AGAAG + G P PP AGE+ PGE+ AG
Sbjct: 1081 GPPGPAGSPGERGP-----AGAAGP-IGIPGRPGPQGPPGPAGEKGA--PGEKGPQGPAG 1132
Query: 446 SP--PGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTGG 503
G V P P G P G G +G + + G G
Sbjct: 1133 RDGLQGPVGLPGPAGPVGPPGEDGD---------KGEIGEPGQKGSKGDKGEQGPPGPTG 1183
Query: 504 QRSACAMGGPGTKSGEP 520
+ GP GEP
Sbjct: 1184 PQGPIGQPGPSGADGEP 1200
Score = 36.2 bits (82), Expect = 0.12
Identities = 47/175 (26%), Positives = 61/175 (34%), Gaps = 29/175 (16%)
Query: 351 PAARREPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGS 410
P +R P P + G G S +G AGP R +G
Sbjct: 908 PRGQRGPTGPRGERGPRGITGKPGPKGN---SGGDGPAGPPGERGPNGPQ---------- 954
Query: 411 GVTTLGDPEVAPPPAAAGEERVP-KPGEQDLSRHAGS-----PPGSVEEPSPGGENSP-G 463
G T G P PP G++ +P PG++ + G PPG V P GE P G
Sbjct: 955 GPT--GFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMG 1012
Query: 464 GGGSPCLSSRSLAWG--SSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTK 516
G P G AG+E +GD +G G R G PG +
Sbjct: 1013 ERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLR-----GFPGDR 1062
Score = 33.5 bits (75), Expect = 0.79
Identities = 48/203 (23%), Positives = 60/203 (29%), Gaps = 36/203 (17%)
Query: 351 PAARREPAVAVAAAAPEESADR--SGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAA 408
P + P A AP E + +G DG G AGP EDG D G
Sbjct: 1107 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDG--DKGEIGEP 1164
Query: 409 GSGVTTLGDPEVAPP-----------PAAAGEERVPKP-GEQDLSRHAGS---------- 446
G + E PP P +G + P P G+Q L G
Sbjct: 1165 GQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPP 1224
Query: 447 ----------PPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETRE 496
PPG E G+ P G P S + G G+ +
Sbjct: 1225 GPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEK 1284
Query: 497 ESEGTGGQRSACAMGGPGTKSGE 519
G G+ GGP GE
Sbjct: 1285 GEPGEAGEPGLPGEGGPPGPKGE 1307
Score = 33.5 bits (75), Expect = 0.79
Identities = 39/148 (26%), Positives = 47/148 (31%), Gaps = 23/148 (15%)
Query: 374 GTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPAAAGEERVP 433
G G+ + G GP R G GA G G P P A GE+ P
Sbjct: 1237 GEKGETGDVGQMGPPGPPGPRGPSGA-----PGADGPQ----GPPGGIGNPGAVGEKGEP 1287
Query: 434 -KPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSV 492
+ GE L G PPG E GE+ P G P G + GD
Sbjct: 1288 GEAGEPGLPGEGG-PPGPKGERGEKGESGPSGAAGP------------PGPKGPPGDDGP 1334
Query: 493 ETREESEGTGGQRSACAMGGPGTKSGEP 520
+ G G GP + G P
Sbjct: 1335 KGSPGPVGFPGDPGPPGEPGPAGQDGPP 1362
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 43.9 bits (102), Expect = 6e-04
Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 418 PEVAPPPAAAGEERV---PKPGEQDLSRHAGSPP----GSVEEPSPGGENSPGGGGSPCL 470
PE+APPPA E V P ++L A SPP V EP + P +
Sbjct: 378 PELAPPPACPSESPVPIAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAKEVTASMAPPTI 437
Query: 471 SSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCPP 524
S + A SA A+ + E EE EG G+ A K GE L PP
Sbjct: 438 PSATPATAPSA-TSPAQEEEMEEEEEEEEGEAGE----AGEAESEKGGEELLPP 486
Score = 30.0 bits (66), Expect = 8.7
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 215 GEPKGPLPDFPYPYQYPAAPGPRAPSPPEAALQPAPTEPR 254
G P P P P P P P S P+A P++PR
Sbjct: 9 GPPPAPSPGLPQPAFPPGQTAPVVFSTPQATQMNTPSQPR 48
Score = 30.0 bits (66), Expect = 8.7
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 203 TPLPGVIPARPDGEPKGPL----PDFPYPYQYPAAPGPRAPSP---PEAALQPAPTEPRY 255
TP VI RPD +G + P P P P+ P +PSP P L+P +EP
Sbjct: 223 TPQVAVI-VRPDDRSQGAIIADRPGLPGPEHSPSESQPSSPSPTPSPSPVLEPG-SEPNL 280
Query: 256 SVV 258
+V+
Sbjct: 281 AVL 283
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 43.9 bits (102), Expect = 6e-04
Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 418 PEVAPPPAAAGEERV---PKPGEQDLSRHAGSPP----GSVEEPSPGGENSPGGGGSPCL 470
PE+APPPA E V P ++L A SPP V EP + P +
Sbjct: 291 PELAPPPACPSESPVPIAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAKEVTASMAPPTI 350
Query: 471 SSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCPP 524
S + A SA A+ + E EE EG G+ A K GE L PP
Sbjct: 351 PSATPATAPSA-TSPAQEEEMEEEEEEEEGEAGE----AGEAESEKGGEELLPP 399
Score = 30.0 bits (66), Expect = 8.7
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 203 TPLPGVIPARPDGEPKGPL----PDFPYPYQYPAAPGPRAPSP---PEAALQPAPTEPRY 255
TP VI RPD +G + P P P P+ P +PSP P L+P +EP
Sbjct: 136 TPQVAVI-VRPDDRSQGAIIADRPGLPGPEHSPSESQPSSPSPTPSPSPVLEPG-SEPNL 193
Query: 256 SVV 258
+V+
Sbjct: 194 AVL 196
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 43.9 bits (102), Expect = 6e-04
Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 418 PEVAPPPAAAGEERV---PKPGEQDLSRHAGSPP----GSVEEPSPGGENSPGGGGSPCL 470
PE+APPPA E V P ++L A SPP V EP + P +
Sbjct: 214 PELAPPPACPSESPVPIAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAKEVTASMAPPTI 273
Query: 471 SSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCPP 524
S + A SA A+ + E EE EG G+ A K GE L PP
Sbjct: 274 PSATPATAPSA-TSPAQEEEMEEEEEEEEGEAGE----AGEAESEKGGEELLPP 322
Score = 30.0 bits (66), Expect = 8.7
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 203 TPLPGVIPARPDGEPKGPL----PDFPYPYQYPAAPGPRAPSP---PEAALQPAPTEPRY 255
TP VI RPD +G + P P P P+ P +PSP P L+P +EP
Sbjct: 59 TPQVAVI-VRPDDRSQGAIIADRPGLPGPEHSPSESQPSSPSPTPSPSPVLEPG-SEPNL 116
Query: 256 SVV 258
+V+
Sbjct: 117 AVL 119
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 43.9 bits (102), Expect = 6e-04
Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 418 PEVAPPPAAAGEERV---PKPGEQDLSRHAGSPP----GSVEEPSPGGENSPGGGGSPCL 470
PE+APPPA E V P ++L A SPP V EP + P +
Sbjct: 378 PELAPPPACPSESPVPIAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAKEVTASMAPPTI 437
Query: 471 SSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCPP 524
S + A SA A+ + E EE EG G+ A K GE L PP
Sbjct: 438 PSATPATAPSA-TSPAQEEEMEEEEEEEEGEAGE----AGEAESEKGGEELLPP 486
Score = 30.0 bits (66), Expect = 8.7
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 215 GEPKGPLPDFPYPYQYPAAPGPRAPSPPEAALQPAPTEPR 254
G P P P P P P P S P+A P++PR
Sbjct: 9 GPPPAPSPGLPQPAFPPGQTAPVVFSTPQATQMNTPSQPR 48
Score = 30.0 bits (66), Expect = 8.7
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 203 TPLPGVIPARPDGEPKGPL----PDFPYPYQYPAAPGPRAPSP---PEAALQPAPTEPRY 255
TP VI RPD +G + P P P P+ P +PSP P L+P +EP
Sbjct: 223 TPQVAVI-VRPDDRSQGAIIADRPGLPGPEHSPSESQPSSPSPTPSPSPVLEPG-SEPNL 280
Query: 256 SVV 258
+V+
Sbjct: 281 AVL 283
>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
isoform 4 [Homo sapiens]
Length = 1403
Score = 43.9 bits (102), Expect = 6e-04
Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 418 PEVAPPPAAAGEERV---PKPGEQDLSRHAGSPP----GSVEEPSPGGENSPGGGGSPCL 470
PE+APPPA E V P ++L A SPP V EP + P +
Sbjct: 182 PELAPPPACPSESPVPIAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAKEVTASMAPPTI 241
Query: 471 SSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEPLCPP 524
S + A SA A+ + E EE EG G+ A K GE L PP
Sbjct: 242 PSATPATAPSA-TSPAQEEEMEEEEEEEEGEAGE----AGEAESEKGGEELLPP 290
Score = 30.0 bits (66), Expect = 8.7
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 203 TPLPGVIPARPDGEPKGPL----PDFPYPYQYPAAPGPRAPSP---PEAALQPAPTEPRY 255
TP VI RPD +G + P P P P+ P +PSP P L+P +EP
Sbjct: 27 TPQVAVI-VRPDDRSQGAIIADRPGLPGPEHSPSESQPSSPSPTPSPSPVLEPG-SEPNL 84
Query: 256 SVV 258
+V+
Sbjct: 85 AVL 87
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 43.9 bits (102), Expect = 6e-04
Identities = 44/151 (29%), Positives = 53/151 (35%), Gaps = 6/151 (3%)
Query: 357 PAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLG 416
P VAAAAP + + A S + GP RA A AA V
Sbjct: 136 PPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPP-PAPAAPPAVAPPA 194
Query: 417 DPEVAPPP-AAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRS- 474
P APPP AA E +P P + PP +P P G GG + +S R
Sbjct: 195 GPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREV 254
Query: 475 ---LAWGSSAGRESARGDSSVETREESEGTG 502
L AG RG EE+ G
Sbjct: 255 VRYLGGSGGAGGRLTRGRVQGLLEEEAAARG 285
Score = 30.4 bits (67), Expect = 6.7
Identities = 24/72 (33%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 193 KGTPEAAVLRTPLPGVIPARPDGEPKGPLPD----------FPYPYQYPAAPGPRAP-SP 241
+G P AA P P P P P P PA PGPRA +
Sbjct: 116 RGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAA 175
Query: 242 PEAALQPAPTEP 253
P AA PAP P
Sbjct: 176 PLAAPPPAPAAP 187
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 43.5 bits (101), Expect = 8e-04
Identities = 52/174 (29%), Positives = 60/174 (34%), Gaps = 26/174 (14%)
Query: 357 PAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDG--GHDTCVAGAAGSGVTT 414
PA + +A P G G+ A G AGPA R E G G V G
Sbjct: 245 PAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANG 304
Query: 415 L-------GDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGG-G 466
L G P VA P G +P P + A G V EP P G G G
Sbjct: 305 LTGAKGAAGLPGVAGAPGLPGPRGIPGPVG---AAGATGARGLVGEPGPAGSKGESGNKG 361
Query: 467 SPCLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
P SAG + G S E + G G SA G PG + G P
Sbjct: 362 EP----------GSAGPQGPPGPSGEEGKRGPNGEAG--SAGPPGPPGLR-GSP 402
Score = 40.8 bits (94), Expect = 0.005
Identities = 47/169 (27%), Positives = 58/169 (34%), Gaps = 24/169 (14%)
Query: 356 EPAV--AVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVT 413
EP V AV A P + G G A +GE G R E G A A V
Sbjct: 623 EPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVG 682
Query: 414 TLGDPEVAPPPAAAGEERVPKPGEQDLSRHAG--SPPGSVEEPSPGGENSPGGGGSPCLS 471
AP PA A +R GE + AG P GS E G P G P
Sbjct: 683 -------APGPAGATGDR----GEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGP--- 728
Query: 472 SRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
+AG+ A+G+ + + G G GP +G P
Sbjct: 729 ------AGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPP 771
Score = 40.0 bits (92), Expect = 0.008
Identities = 44/149 (29%), Positives = 54/149 (36%), Gaps = 28/149 (18%)
Query: 374 GTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPAAAGEERVP 433
G G A GE GPA S+ E G G+AG PP +GEE
Sbjct: 334 GAAGATGARGLVGEPGPAGSKGESGNKGE--PGSAGP----------QGPPGPSGEE--- 378
Query: 434 KPGEQDLSRHAGS--PPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSS 491
G++ + AGS PPG PG SPG G P R+ G +RG S
Sbjct: 379 --GKRGPNGEAGSAGPPG-----PPGLRGSPGSRGLPGADGRA----GVMGPPGSRGASG 427
Query: 492 VETREESEGTGGQRSACAMGGPGTKSGEP 520
G G+ + GP G P
Sbjct: 428 PAGVRGPNGDAGRPGEPGLMGPRGLPGSP 456
Score = 39.7 bits (91), Expect = 0.011
Identities = 46/172 (26%), Positives = 58/172 (33%), Gaps = 15/172 (8%)
Query: 355 REPAVAVAAAAPEE---SADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSG 411
R P A A P+ A G GQ + G AGP EDG G G
Sbjct: 99 RGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGH-----PGKPGRP 153
Query: 412 VTTLGDPEVAPPPAAAGEERVP-KPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCL 470
G+ V P A G P PG + + H G + +PG + PG G
Sbjct: 154 ----GERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGT 209
Query: 471 SSRSLAWG--SSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
++ A G GR A G + + S G G GP G P
Sbjct: 210 PGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAP 261
Score = 37.7 bits (86), Expect = 0.042
Identities = 45/168 (26%), Positives = 52/168 (30%), Gaps = 11/168 (6%)
Query: 355 REPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAG----S 410
R A A A P G G+ + G AGPA + + G GA G +
Sbjct: 693 RGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGE--RGAKGPKGEN 750
Query: 411 GVTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCL 470
GV P A PA G P P SR G PPG P G P G
Sbjct: 751 GVVGPTGPVGAAGPA--GPNGPPGPAG---SRGDGGPPGMTGFPGAAGRTGPPGPSGISG 805
Query: 471 SSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSG 518
G RGD R G G GP ++G
Sbjct: 806 PPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAG 853
Score = 33.5 bits (75), Expect = 0.79
Identities = 47/184 (25%), Positives = 57/184 (30%), Gaps = 30/184 (16%)
Query: 361 VAAAAPEESADRSGTDGQACASAREGEAGPAR------------SRAEDGGHDTCVAGAA 408
V A P A G G+A + G GP SR E G VAGA
Sbjct: 834 VGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPG--VAGAV 891
Query: 409 GSGVTTLGDPEVAPPPAAAGEE-RVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGS 467
G G +A PP A G V PG AG + PG + PG G
Sbjct: 892 GEP----GPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGE 947
Query: 468 PCLSSRSLAWGSS-----------AGRESARGDSSVETREESEGTGGQRSACAMGGPGTK 516
G++ AG+ RG++ G G R G
Sbjct: 948 RGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGD 1007
Query: 517 SGEP 520
GEP
Sbjct: 1008 KGEP 1011
>gi|169201741 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 43.5 bits (101), Expect = 8e-04
Identities = 51/153 (33%), Positives = 63/153 (41%), Gaps = 31/153 (20%)
Query: 363 AAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAP 422
A AP + R G +A AS+ P +R GG T GSG LG
Sbjct: 21 AWAPGCTGIRKGDTNKARASSPP----PRETRGGPGGALTLPRKPPGSG-RWLG------ 69
Query: 423 PPAAAGEERVPK---PGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGS 479
AAG +P PG Q SR G PG++ P+ G P GG C + GS
Sbjct: 70 --LAAGTATLPSSLCPGVQ-ASRERGQRPGAI--PAAGSRGEPAGGRGCCTAE-----GS 119
Query: 480 SAG----RESARGDSSVETREESEGTGGQRSAC 508
S G RE +G + TR S G GG+R C
Sbjct: 120 SCGHPWRRERRQGAA---TRGPSRGPGGERRVC 149
>gi|169201345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 43.5 bits (101), Expect = 8e-04
Identities = 51/153 (33%), Positives = 63/153 (41%), Gaps = 31/153 (20%)
Query: 363 AAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAP 422
A AP + R G +A AS+ P +R GG T GSG LG
Sbjct: 21 AWAPGCTGIRKGDTNKARASSPP----PRETRGGPGGALTLPRKPPGSG-RWLG------ 69
Query: 423 PPAAAGEERVPK---PGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGS 479
AAG +P PG Q SR G PG++ P+ G P GG C + GS
Sbjct: 70 --LAAGTATLPSSLCPGVQ-ASRERGQRPGAI--PAAGSRGEPAGGRGCCTAE-----GS 119
Query: 480 SAG----RESARGDSSVETREESEGTGGQRSAC 508
S G RE +G + TR S G GG+R C
Sbjct: 120 SCGHPWRRERRQGAA---TRGPSRGPGGERRVC 149
>gi|169188544 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 43.5 bits (101), Expect = 8e-04
Identities = 51/153 (33%), Positives = 63/153 (41%), Gaps = 31/153 (20%)
Query: 363 AAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAP 422
A AP + R G +A AS+ P +R GG T GSG LG
Sbjct: 21 AWAPGCTGIRKGDTNKARASSPP----PRETRGGPGGALTLPRKPPGSG-RWLG------ 69
Query: 423 PPAAAGEERVPK---PGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGS 479
AAG +P PG Q SR G PG++ P+ G P GG C + GS
Sbjct: 70 --LAAGTATLPSSLCPGVQ-ASRERGQRPGAI--PAAGSRGEPAGGRGCCTAE-----GS 119
Query: 480 SAG----RESARGDSSVETREESEGTGGQRSAC 508
S G RE +G + TR S G GG+R C
Sbjct: 120 SCGHPWRRERRQGAA---TRGPSRGPGGERRVC 149
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 43.1 bits (100), Expect = 0.001
Identities = 41/171 (23%), Positives = 62/171 (36%), Gaps = 8/171 (4%)
Query: 356 EPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAE-DGGHDTCVAGAAGSGVTT 414
EP A A +E ++ D + A +EGE A ++ E GAA +
Sbjct: 41 EPQAAAEPAEAKEGKEKPDQDAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEP 100
Query: 415 LGDPE---VAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPS--PGGENSPGGGGSPC 469
PE AP PAA GE PK E + + P + EEPS G +P
Sbjct: 101 PKAPEQEQAAPGPAAGGE--APKAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAPAAPA 158
Query: 470 LSSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
++ + +++ ++E T S GP + EP
Sbjct: 159 AQETKSDGAPASDSKPGSSEAAPSSKETPAATEAPSSTPKAQGPAASAEEP 209
Score = 36.6 bits (83), Expect = 0.093
Identities = 40/180 (22%), Positives = 63/180 (35%), Gaps = 18/180 (10%)
Query: 325 PVDDGRGKAQFNKARRQLVVTLPVVLPAARREPAVAVAAAAPEESADRSGTDGQACASAR 384
P D GKA+ + + A + EP AA + ++ QA
Sbjct: 58 PDQDAEGKAEEKEGEKDAAAAKE---EAPKAEPEKTEGAAEAKAEPPKAPEQEQAAPGPA 114
Query: 385 EGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPAAAGEERVPKPGEQDLSRHA 444
G P + A ++ A G+P+ PAA + G + +
Sbjct: 115 AGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAPAAPAAQETKSDG----APAS 170
Query: 445 GSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAGRE--------SARGDSSVETRE 496
S PGS E +P + +P +P SS A G +A E +A D +V +E
Sbjct: 171 DSKPGS-SEAAPSSKETPAATEAP--SSTPKAQGPAASAEEPKPVEAPAANSDQTVTVKE 227
Score = 34.7 bits (78), Expect = 0.35
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 168 ALEAVEKQFGVKLDRRNAKTLKAKYKGTPEAAVLRTPLPGVIPARPDGEPKGPLPDFPYP 227
A E E + G + ++A+ + +G +AA + P P + +G + P
Sbjct: 45 AAEPAEAKEGKEKPDQDAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAP 104
Query: 228 YQYPAAPGP----RAPSPPEAALQPA 249
Q AAPGP AP EAA PA
Sbjct: 105 EQEQAAPGPAAGGEAPKAAEAAAAPA 130
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 43.1 bits (100), Expect = 0.001
Identities = 47/177 (26%), Positives = 59/177 (33%), Gaps = 30/177 (16%)
Query: 374 GTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAPPPAAAGEE--- 430
GT G+ S G GPA + E G T G+ G P P G E
Sbjct: 697 GTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVG 756
Query: 431 RVPKPGEQDLSRHAGSP--PGSVEEPSP------GGENSPGGGGSPCLSSRSLAWG--SS 480
R KPG+ L G P G EP P G + PG G P + G
Sbjct: 757 RPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGP 816
Query: 481 AGRESARGDSSVE-----------------TREESEGTGGQRSACAMGGPGTKSGEP 520
G + A+G V+ R+ +G G R GP + GEP
Sbjct: 817 TGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEP 873
Score = 37.4 bits (85), Expect = 0.055
Identities = 47/185 (25%), Positives = 65/185 (35%), Gaps = 41/185 (22%)
Query: 372 RSGTDGQACASAREGEAGPARSRAEDGGHDTC-VAGAAGS------GVTTL--GDPEVAP 422
R+G G GEAGPA S G + GA G ++ L GD V
Sbjct: 591 RAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVA 650
Query: 423 PPAAAGEERVPKP------------GEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCL 470
P +GE+ P P GE+ L G + +PG PG G P +
Sbjct: 651 LPGPSGEKGEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGV 710
Query: 471 SSRSLAWGSSAGRESARGD------------SSVETREESEGTGGQRSACAMGGPGTKSG 518
AG + +GD + + R G G++ +G PG K G
Sbjct: 711 Q-------GPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPG-KPG 762
Query: 519 EPLCP 523
+P P
Sbjct: 763 QPGLP 767
Score = 36.6 bits (83), Expect = 0.093
Identities = 51/177 (28%), Positives = 61/177 (34%), Gaps = 23/177 (12%)
Query: 353 ARREPAVAVAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGV 412
AR V ++ AP + A+ G G+ S G +G S E G G G G
Sbjct: 356 ARGNDCVRISPDAPLQCAE--GPKGEKGESGALGPSGLPGSTGEKGQK-----GEKGDGG 408
Query: 413 TTLGDPEVAPPPAAAGEERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSS 472
G P GE V P Q P G EP P G P G G P
Sbjct: 409 IK-GVPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTP- 466
Query: 473 RSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTK--SGEP--LCPPL 525
G G +GD EG GG+ G PG K G+P +CP L
Sbjct: 467 -----GDPGGPPGPKGDKGSSGIPGKEGPGGK-----PGKPGVKGEKGDPCEVCPTL 513
Score = 32.0 bits (71), Expect = 2.3
Identities = 41/150 (27%), Positives = 44/150 (29%), Gaps = 14/150 (9%)
Query: 374 GTDGQACASAREGEAGPARSRAEDG-----GHDTCVAGAAGSGVTTLGDPEVAPPPAAAG 428
G DG+ G AGP G GH G G P P A G
Sbjct: 1219 GKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKP--GPPGSTGRPGAEG 1276
Query: 429 EERVPKPGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARG 488
E PG G PPG V P P G+ P G + L A G G G
Sbjct: 1277 E-----PGAMGPQGRPG-PPGHVGPPGPPGQPGPAGISAVGLKGDRGATG-ERGLAGLPG 1329
Query: 489 DSSVETREESEGTGGQRSACAMGGPGTKSG 518
G G A GP K G
Sbjct: 1330 QPGPPGHPGPPGEPGTDGAAGKEGPPGKQG 1359
Score = 31.6 bits (70), Expect = 3.0
Identities = 41/169 (24%), Positives = 56/169 (33%), Gaps = 25/169 (14%)
Query: 361 VAAAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAG----SGVTTLG 416
V PE + G G+ G+ PAR G + G G S + +G
Sbjct: 509 VCPTLPEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQG----IKGEKGEPCLSCSSVVG 564
Query: 417 DPEVAPPPAAAGEERVPKPGEQDLSRHAGSP-----PGSVEEPSPGGENSPGGGGSPCLS 471
+ A+G+ P G L AG P G+ E P G P G P
Sbjct: 565 AQHLVSSTGASGDVGSPGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGP--- 621
Query: 472 SRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMGGPGTKSGEP 520
AG + A+G+ S G A+ GP + GEP
Sbjct: 622 ---------AGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEP 661
Score = 30.0 bits (66), Expect = 8.7
Identities = 33/129 (25%), Positives = 48/129 (37%), Gaps = 21/129 (16%)
Query: 403 CVAGAAGSGVTTLGDPEVAP--PPAAAGEERVPKP----GEQ-----DLSRHAGSPPGSV 451
CV GA S VT +AP P GE +P P GE+ D R + P
Sbjct: 319 CVHGARDSNVT------LAPSGPKGGKGERGLPGPPGSKGEKGARGNDCVRISPDAPLQC 372
Query: 452 EEPSPGGENSPGGGGSPCLSSRSLAWGSSAGRESARGDSSVETREESEGTGGQRSACAMG 511
E G + G G L + G++ +GD ++ G G+ +
Sbjct: 373 AEGPKGEKGESGALGPSGLPGST----GEKGQKGEKGDGGIKGVPGKPGRDGRPGEICVI 428
Query: 512 GPGTKSGEP 520
GP + G+P
Sbjct: 429 GPKGQKGDP 437
>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
Length = 1295
Score = 41.6 bits (96), Expect = 0.003
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 193 KGTPEAAVLRTPLPGVIPARPDGEPKGPLPDFPYPYQYPAAPGP-RAPSPPEAALQPAPT 251
+ +P A TPLP PA+P EPK P P P P P P P + P PP A PAPT
Sbjct: 1082 QSSPIDAQPATPLPQKDPAQPL-EPKRPPP--PRPVAPPTRPAPPQRPPPPSGARSPAPT 1138
Query: 252 EPRY 255
+
Sbjct: 1139 RKEF 1142
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 41.6 bits (96), Expect = 0.003
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 193 KGTPEAAVLRTPLPGVIPARPDGEPKGPLPDFPYPYQYPAAPGP-RAPSPPEAALQPAPT 251
+ +P A TPLP PA+P EPK P P P P P P P + P PP A PAPT
Sbjct: 1121 QSSPIDAQPATPLPQKDPAQPL-EPKRPPP--PRPVAPPTRPAPPQRPPPPSGARSPAPT 1177
Query: 252 EPRY 255
+
Sbjct: 1178 RKEF 1181
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 41.6 bits (96), Expect = 0.003
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 193 KGTPEAAVLRTPLPGVIPARPDGEPKGPLPDFPYPYQYPAAPGP-RAPSPPEAALQPAPT 251
+ +P A TPLP PA+P EPK P P P P P P P + P PP A PAPT
Sbjct: 1121 QSSPIDAQPATPLPQKDPAQPL-EPKRPPP--PRPVAPPTRPAPPQRPPPPSGARSPAPT 1177
Query: 252 EPRY 255
+
Sbjct: 1178 RKEF 1181
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,350,764
Number of Sequences: 37866
Number of extensions: 2199148
Number of successful extensions: 15777
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 835
Number of HSP's that attempted gapping in prelim test: 11600
Number of HSP's gapped (non-prelim): 4342
length of query: 789
length of database: 18,247,518
effective HSP length: 110
effective length of query: 679
effective length of database: 14,082,258
effective search space: 9561853182
effective search space used: 9561853182
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.