Guide to the Human Genome
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Name: SLC11A1 Sequence: fasta or formatted (550aa) NCBI GI: 109255241
Description:

natural resistance-associated macrophage protein 1

Referenced in:

Macrophages and Monocytes
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         54           3
 C cysteine            1.8         10           2
 D aspartate           2.9         16           1
 E glutamate           3.3         18           2
 F phenylalanine       6.0         33           3
 G glycine             8.5         47           2
 H histidine           2.0         11           3
 I isoleucine          6.2         34           2
 K lysine              2.4         13           1
 L leucine            15.3         84           3
 M methionine          2.4         13           1
 N asparagine          2.9         16           2
 P proline             5.3         29           2
 Q glutamine           3.1         17           2
 R arginine            4.0         22           2
 S serine              6.5         36           2
 T threonine           5.8         32           1
 V valine              6.7         37           2
 W tryptophan          1.5          8           1
 Y tyrosine            3.6         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   natural resistance-associated macrophage protein 1 ... 
SLC11A2               0.626   solute carrier family 11 (proton-coupled divalent me...
KCNK4                 0.009   TRAAK 
NFIA                  0.007   nuclear factor I/A isoform 4 
NFIA                  0.007   nuclear factor I/A isoform 3 
NFIA                  0.007   nuclear factor I/A isoform 2 
NFIA                  0.007   nuclear factor I/A isoform 1 
SLC41A3               0.007   solute carrier family 41, member 3 isoform 3 
CHAF1A                0.006   chromatin assembly factor 1, subunit A (p150) 
EPHA10                0.006   EPH receptor A10 isofom 3 
SCFD2                 0.006   sec1 family domain containing 2 
WT1                   0.005   Wilms tumor 1 isoform D 
WT1                   0.005   Wilms tumor 1 isoform C 
WT1                   0.005   Wilms tumor 1 isoform B 
WT1                   0.005   Wilms tumor 1 isoform A 
ADCY6                 0.005   adenylate cyclase 6 isoform a 
ADCY6                 0.005   adenylate cyclase 6 isoform b 
CTTNBP2NL             0.005   CTTNBP2 N-terminal like 
APC2                  0.005   adenomatosis polyposis coli 2 
TENC1                 0.005   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.005   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.005   tensin like C1 domain containing phosphatase isoform...
NRG2                  0.005   neuregulin 2 isoform 2 
NRG2                  0.005   neuregulin 2 isoform 4 
NRG2                  0.005   neuregulin 2 isoform 3 
NRG2                  0.005   neuregulin 2 isoform 1 
PSD                   0.005   pleckstrin and Sec7 domain containing 
TCF7L2                0.004   transcription factor 7-like 2 isoform 2 
TCF7L2                0.004   transcription factor 7-like 2 isoform 6 
TCF7L2                0.004   transcription factor 7-like 2 isoform 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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