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Search of human proteins with 14270505
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14270505 protocadherin gamma subfamily B, 5 isoform 2
precursor [Homo sapiens]
(818 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs... 1610 0.0
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 1573 0.0
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs... 1317 0.0
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 1317 0.0
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs... 1123 0.0
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 1123 0.0
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs... 1080 0.0
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 1080 0.0
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 1077 0.0
gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precurs... 1077 0.0
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs... 1060 0.0
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 1060 0.0
gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precurs... 1040 0.0
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs... 1040 0.0
gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precurs... 702 0.0
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 702 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 694 0.0
gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precurs... 694 0.0
gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur... 687 0.0
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 687 0.0
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 684 0.0
gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precur... 684 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 682 0.0
gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precurs... 682 0.0
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 681 0.0
gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs... 681 0.0
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 672 0.0
gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precurs... 672 0.0
gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precurs... 662 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 662 0.0
>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 1610 bits (4170), Expect = 0.0
Identities = 818/818 (100%), Positives = 818/818 (100%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFSLNSKSGEITTQ 300
VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFSLNSKSGEITTQ
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFSLNSKSGEITTQ 300
Query: 301 KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGT 360
KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGT
Sbjct: 301 KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGT 360
Query: 361 LIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA 420
LIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA
Sbjct: 361 LIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA 420
Query: 421 TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLN 480
TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLN
Sbjct: 421 TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLN 480
Query: 481 GQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSA 540
GQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSA
Sbjct: 481 GQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSA 540
Query: 541 NVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL 600
NVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL
Sbjct: 541 NVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL 600
Query: 601 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF 660
SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF
Sbjct: 601 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF 660
Query: 661 ADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAW 720
ADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAW
Sbjct: 661 ADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAW 720
Query: 721 SCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDS 780
SCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDS
Sbjct: 721 SCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDS 780
Query: 781 SGALFPLCNSSESTSHPELVSFIYVYSFSLPTQFSVFT 818
SGALFPLCNSSESTSHPELVSFIYVYSFSLPTQFSVFT
Sbjct: 781 SGALFPLCNSSESTSHPELVSFIYVYSFSLPTQFSVFT 818
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1573 bits (4074), Expect = 0.0
Identities = 799/799 (100%), Positives = 799/799 (100%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFSLNSKSGEITTQ 300
VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFSLNSKSGEITTQ
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFSLNSKSGEITTQ 300
Query: 301 KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGT 360
KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGT
Sbjct: 301 KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGT 360
Query: 361 LIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA 420
LIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA
Sbjct: 361 LIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA 420
Query: 421 TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLN 480
TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLN
Sbjct: 421 TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLN 480
Query: 481 GQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSA 540
GQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSA
Sbjct: 481 GQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSA 540
Query: 541 NVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL 600
NVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL
Sbjct: 541 NVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL 600
Query: 601 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF 660
SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF
Sbjct: 601 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF 660
Query: 661 ADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAW 720
ADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAW
Sbjct: 661 ADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAW 720
Query: 721 SCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDS 780
SCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDS
Sbjct: 721 SCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDS 780
Query: 781 SGALFPLCNSSESTSHPEL 799
SGALFPLCNSSESTSHPEL
Sbjct: 781 SGALFPLCNSSESTSHPEL 799
>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 1317 bits (3409), Expect = 0.0
Identities = 671/805 (83%), Positives = 724/805 (89%), Gaps = 4/805 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
VEIEDINDHTPKFTQNSFELQISESAQPGTRFIL A DADIG N+LQ Y+LS + FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
I KEK DGSKYPE+ L+ LDRE+Q + L LTALD G PPLS T ++ + VTDANDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQI--FSLNSKSGEIT 298
VF++DVYRVSL ENV PGTTVLQV+ATDQDEG+N+EIT+SF QI F LNS +GEIT
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQFDLNSNTGEIT 300
Query: 299 TQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVP 358
LDFEE KEYS+V+E RDGGG++AQCTVE+ + DENDN+PEV F SL +I+E+A
Sbjct: 301 VLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAEL 360
Query: 359 GTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTI 418
GT IAL+K+ D+DS NGEV C+L+G+VPFKI++SS+N+YKLVTD LDREQ PEYN+T+
Sbjct: 361 GTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITV 420
Query: 419 TATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLG 478
TATDRGKPPLSSS S+ LHI DVNDNAPVF Q+SY+V V ENNPPGASI+QV ASD DLG
Sbjct: 421 TATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLG 480
Query: 479 LNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPAL 538
NGQVSY IMASDLE L+SYVS+SA+SGVVFAQRAFD+EQLR FELTLQARDQGSPAL
Sbjct: 481 PNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPAL 540
Query: 539 SANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNA 598
SANVSLRVLV DRNDNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGHNA
Sbjct: 541 SANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNA 600
Query: 599 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL 658
WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATLHL
Sbjct: 601 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHL 660
Query: 659 VFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPA 718
VFADSLQEVLPDITDRP PSD QAELQFYLVVALALISVLFL+A+ILA+ALRLRRSSSPA
Sbjct: 661 VFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPA 720
Query: 719 AWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 778
+WSCFQPGLCVKS VVPPNYS+GTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG
Sbjct: 721 SWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 780
Query: 779 DSSGALFPLCNSSESTSHPELVSFI 803
DSSGALFPLCNSSE TSH VSF+
Sbjct: 781 DSSGALFPLCNSSELTSHQ--VSFL 803
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1317 bits (3408), Expect = 0.0
Identities = 668/800 (83%), Positives = 721/800 (90%), Gaps = 2/800 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
VEIEDINDHTPKFTQNSFELQISESAQPGTRFIL A DADIG N+LQ Y+LS + FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
I KEK DGSKYPE+ L+ LDRE+Q + L LTALD G PPLS T ++ + VTDANDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQI--FSLNSKSGEIT 298
VF++DVYRVSL ENV PGTTVLQV+ATDQDEG+N+EIT+SF QI F LNS +GEIT
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQFDLNSNTGEIT 300
Query: 299 TQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVP 358
LDFEE KEYS+V+E RDGGG++AQCTVE+ + DENDN+PEV F SL +I+E+A
Sbjct: 301 VLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAEL 360
Query: 359 GTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTI 418
GT IAL+K+ D+DS NGEV C+L+G+VPFKI++SS+N+YKLVTD LDREQ PEYN+T+
Sbjct: 361 GTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITV 420
Query: 419 TATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLG 478
TATDRGKPPLSSS S+ LHI DVNDNAPVF Q+SY+V V ENNPPGASI+QV ASD DLG
Sbjct: 421 TATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLG 480
Query: 479 LNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPAL 538
NGQVSY IMASDLE L+SYVS+SA+SGVVFAQRAFD+EQLR FELTLQARDQGSPAL
Sbjct: 481 PNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPAL 540
Query: 539 SANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNA 598
SANVSLRVLV DRNDNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGHNA
Sbjct: 541 SANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNA 600
Query: 599 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL 658
WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATLHL
Sbjct: 601 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHL 660
Query: 659 VFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPA 718
VFADSLQEVLPDITDRP PSD QAELQFYLVVALALISVLFL+A+ILA+ALRLRRSSSPA
Sbjct: 661 VFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPA 720
Query: 719 AWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 778
+WSCFQPGLCVKS VVPPNYS+GTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG
Sbjct: 721 SWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 780
Query: 779 DSSGALFPLCNSSESTSHPE 798
DSSGALFPLCNSSE TSH +
Sbjct: 781 DSSGALFPLCNSSELTSHQQ 800
>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 1124 bits (2906), Expect = 0.0
Identities = 566/807 (70%), Positives = 648/807 (80%), Gaps = 4/807 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG + RA VLF LL LF P L E IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
+ RKLRVS+EK +F+V AESG+LLV +R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V IED+NDH P+F + L+I ESA GTR L+ A D DI +NS++ YK++ NP FSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
+++ DG KYPEL+LEK LDRE+Q H L+LTALDGG PP S T + I V D NDNPP
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296
VF+RD YR+SL EN+PPG+ VLQV+ATDQDEG+N+EI Y F T Q +FSL+ K+G
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
I + DFE+ + Y+M VE +DGGGL QC V I I DENDNSPE+ SL + ILEN+
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
PG ++AL K D D G NGEV C ++ ++PFKI SSS N YKLVTDG LDREQTPEYNV
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TI ATDRGKPPLSSS S+ L++ D+NDNAPVF Q SY+V V ENNPPGASIAQV ASD D
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
LGLNG +SYSI+ASDLEPLA++SYVS+SAQSGVVFAQRAFD+EQLR F LTLQARD GSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
LSANVSLRVLVGDRNDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGH
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HLVFAD+LQE+LPD++DRPV SDPQAELQFYLVVALALISVLFLLAVILA+ALRLRRS S
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDIL 776
PA W CF PGLCVKSGPVVPPNYS+GTLPYSYNLC+AHTG EFNFLKCS L S +D++
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
Query: 777 CGDSSGALFPLCNSSESTSHPELVSFI 803
C S GAL P + TSHPE ++ +
Sbjct: 781 CSVSPGALIPPHGGEDLTSHPETLTSV 807
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 1123 bits (2905), Expect = 0.0
Identities = 566/805 (70%), Positives = 647/805 (80%), Gaps = 4/805 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG + RA VLF LL LF P L E IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
+ RKLRVS+EK +F+V AESG+LLV +R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V IED+NDH P+F + L+I ESA GTR L+ A D DI +NS++ YK++ NP FSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
+++ DG KYPEL+LEK LDRE+Q H L+LTALDGG PP S T + I V D NDNPP
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296
VF+RD YR+SL EN+PPG+ VLQV+ATDQDEG+N+EI Y F T Q +FSL+ K+G
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
I + DFE+ + Y+M VE +DGGGL QC V I I DENDNSPE+ SL + ILEN+
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
PG ++AL K D D G NGEV C ++ ++PFKI SSS N YKLVTDG LDREQTPEYNV
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TI ATDRGKPPLSSS S+ L++ D+NDNAPVF Q SY+V V ENNPPGASIAQV ASD D
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
LGLNG +SYSI+ASDLEPLA++SYVS+SAQSGVVFAQRAFD+EQLR F LTLQARD GSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
LSANVSLRVLVGDRNDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGH
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HLVFAD+LQE+LPD++DRPV SDPQAELQFYLVVALALISVLFLLAVILA+ALRLRRS S
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDIL 776
PA W CF PGLCVKSGPVVPPNYS+GTLPYSYNLC+AHTG EFNFLKCS L S +D++
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
Query: 777 CGDSSGALFPLCNSSESTSHPELVS 801
C S GAL P + TSHPE ++
Sbjct: 781 CSVSPGALIPPHGGEDLTSHPETLT 805
>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
[Homo sapiens]
Length = 810
Score = 1080 bits (2792), Expect = 0.0
Identities = 562/781 (71%), Positives = 640/781 (81%), Gaps = 8/781 (1%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKPYF 75
VLF FLLSLFC A+ +QIRY IPEE+ GS VG LA DLG SV+ELPTRKLRVS+E YF
Sbjct: 14 VLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-YF 72
Query: 76 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQ 135
VS ESG+LLV+ R+DRE+ICG+K CALEFE VAENP+N +HV V I+DIND+ P+F
Sbjct: 73 NVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVA 132
Query: 136 NSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELA 195
+L+I ESA PG +F L+ A+DAD+ NSL+ Y ++ N FSL KE DGSKYP L
Sbjct: 133 KGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLL 192
Query: 196 LEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENV 255
LEK LDRE QS HRL+LTA+DGG PPLSGTT + I+VTDANDN PVF+++VYRVSL+ENV
Sbjct: 193 LEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENV 252
Query: 256 PPGTTVLQVSATDQDEGINSEITYSFYRTG---QIFSLNSKSGEITTQKKLDFEETKEYS 312
P GT+VL+V ATDQDEGIN+EITY+F + +F+LN +G+ITT LDFEET Y
Sbjct: 253 PWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYV 312
Query: 313 MVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDS 372
+ VE +DGG A C V+I I DENDN+PEVTF S I E++ GT+IALIK+ D+DS
Sbjct: 313 LSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDS 372
Query: 373 GENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSI 432
G+NG V C Q EVPFK+ S+SKN YKLV G L+REQT +YNVTI ATD+GKP LSS
Sbjct: 373 GQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRT 432
Query: 433 SVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDL 492
S+ LHI D+NDNAPVFHQASY+V V ENNPPGASIAQV ASD DLG NG+VSYSI+ASDL
Sbjct: 433 SITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDL 492
Query: 493 EPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRN 552
EP L SYVS+S QSGVVFAQRAFD+EQLR FELTLQARDQGSPALSANVSLRVLVGD N
Sbjct: 493 EPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLN 552
Query: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL
Sbjct: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
Query: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDIT 672
FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD++
Sbjct: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLS 672
Query: 673 DRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCVKSG 732
DRP PSDPQ ELQFYLVVALALISVLFLLAVILA+ALRLRRSSS CFQ GLC KSG
Sbjct: 673 DRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSG 732
Query: 733 PVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSS 791
P VPPN+S+GTLPYSYNLC+A H+ KTEFN L + +++ QD+LC D S +C S+
Sbjct: 733 PGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPS---MVVCASN 789
Query: 792 E 792
E
Sbjct: 790 E 790
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 1080 bits (2792), Expect = 0.0
Identities = 562/781 (71%), Positives = 640/781 (81%), Gaps = 8/781 (1%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKPYF 75
VLF FLLSLFC A+ +QIRY IPEE+ GS VG LA DLG SV+ELPTRKLRVS+E YF
Sbjct: 14 VLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-YF 72
Query: 76 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQ 135
VS ESG+LLV+ R+DRE+ICG+K CALEFE VAENP+N +HV V I+DIND+ P+F
Sbjct: 73 NVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVA 132
Query: 136 NSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELA 195
+L+I ESA PG +F L+ A+DAD+ NSL+ Y ++ N FSL KE DGSKYP L
Sbjct: 133 KGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLL 192
Query: 196 LEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENV 255
LEK LDRE QS HRL+LTA+DGG PPLSGTT + I+VTDANDN PVF+++VYRVSL+ENV
Sbjct: 193 LEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENV 252
Query: 256 PPGTTVLQVSATDQDEGINSEITYSFYRTG---QIFSLNSKSGEITTQKKLDFEETKEYS 312
P GT+VL+V ATDQDEGIN+EITY+F + +F+LN +G+ITT LDFEET Y
Sbjct: 253 PWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYV 312
Query: 313 MVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDS 372
+ VE +DGG A C V+I I DENDN+PEVTF S I E++ GT+IALIK+ D+DS
Sbjct: 313 LSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDS 372
Query: 373 GENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSI 432
G+NG V C Q EVPFK+ S+SKN YKLV G L+REQT +YNVTI ATD+GKP LSS
Sbjct: 373 GQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRT 432
Query: 433 SVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDL 492
S+ LHI D+NDNAPVFHQASY+V V ENNPPGASIAQV ASD DLG NG+VSYSI+ASDL
Sbjct: 433 SITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDL 492
Query: 493 EPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRN 552
EP L SYVS+S QSGVVFAQRAFD+EQLR FELTLQARDQGSPALSANVSLRVLVGD N
Sbjct: 493 EPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLN 552
Query: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL
Sbjct: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
Query: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDIT 672
FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD++
Sbjct: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLS 672
Query: 673 DRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCVKSG 732
DRP PSDPQ ELQFYLVVALALISVLFLLAVILA+ALRLRRSSS CFQ GLC KSG
Sbjct: 673 DRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSG 732
Query: 733 PVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSS 791
P VPPN+S+GTLPYSYNLC+A H+ KTEFN L + +++ QD+LC D S +C S+
Sbjct: 733 PGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPS---MVVCASN 789
Query: 792 E 792
E
Sbjct: 790 E 790
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 1077 bits (2784), Expect = 0.0
Identities = 553/786 (70%), Positives = 642/786 (81%), Gaps = 5/786 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
M + +G G L VL FLLSLF AL QIRY IPEE+ K SVVGNLA DLG SV++
Sbjct: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LP RKLRVS+EK YFTV+ ESG+LLVS R+DRE+ICGK+P C L+F+ VAENPLN +++
Sbjct: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V ++DIND+TP F Q L+I ES +PGT F L+ A D+D+G NSLQ+Y L+ N F L
Sbjct: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
K+ DG KYPEL L+ +LDRE+ S H+LVLTA+DGG PP SGTT++RI+VTDANDNPP
Sbjct: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296
VF++DVYRV+LRE+VPPG VLQV+ATD+DEGIN+EITYSF+ + F+LN K+GE
Sbjct: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
ITT+ LDFE Y++ +E +D G L A C++++ I D+ND +PEV S+ + E++
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
PGT+IALIK D+DSGENGEV CQ+ G F + SSSKN YKLVTDG LDRE+ PEYN+
Sbjct: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TITATD GKPPLSSSI V LHI DVNDNAPVF Q SY+V V ENNPPGASIAQ+ ASD D
Sbjct: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
LG +GQVSYSI+ASDL+P + SYVS+SAQSGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
ALSANVSLRVLVGD NDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HL+FADSLQEVLPD++DR PSDPQA+LQFYLVVALALISVLF LAVILA++LRLR SS
Sbjct: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775
AW CFQPGL K GP V PNYS+GTLPYSYNLCVA + KTEFNFL + +L QD+
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
Query: 776 LCGDSS 781
+C ++S
Sbjct: 781 VCDNAS 786
>gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precursor
[Homo sapiens]
Length = 811
Score = 1077 bits (2784), Expect = 0.0
Identities = 553/786 (70%), Positives = 642/786 (81%), Gaps = 5/786 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
M + +G G L VL FLLSLF AL QIRY IPEE+ K SVVGNLA DLG SV++
Sbjct: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LP RKLRVS+EK YFTV+ ESG+LLVS R+DRE+ICGK+P C L+F+ VAENPLN +++
Sbjct: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V ++DIND+TP F Q L+I ES +PGT F L+ A D+D+G NSLQ+Y L+ N F L
Sbjct: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
K+ DG KYPEL L+ +LDRE+ S H+LVLTA+DGG PP SGTT++RI+VTDANDNPP
Sbjct: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296
VF++DVYRV+LRE+VPPG VLQV+ATD+DEGIN+EITYSF+ + F+LN K+GE
Sbjct: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
ITT+ LDFE Y++ +E +D G L A C++++ I D+ND +PEV S+ + E++
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
PGT+IALIK D+DSGENGEV CQ+ G F + SSSKN YKLVTDG LDRE+ PEYN+
Sbjct: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TITATD GKPPLSSSI V LHI DVNDNAPVF Q SY+V V ENNPPGASIAQ+ ASD D
Sbjct: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
LG +GQVSYSI+ASDL+P + SYVS+SAQSGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
ALSANVSLRVLVGD NDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HL+FADSLQEVLPD++DR PSDPQA+LQFYLVVALALISVLF LAVILA++LRLR SS
Sbjct: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775
AW CFQPGL K GP V PNYS+GTLPYSYNLCVA + KTEFNFL + +L QD+
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
Query: 776 LCGDSS 781
+C ++S
Sbjct: 781 VCDNAS 786
>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
[Homo sapiens]
Length = 808
Score = 1060 bits (2741), Expect = 0.0
Identities = 547/785 (69%), Positives = 625/785 (79%), Gaps = 5/785 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG + RA VLF LL LF P LCE IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
+ R+LRVS+EK +F+V A+SG+LLV R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V IED+NDH P+F ++ L+ISES G ILE AED DI +NSL KY+LS N FSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
+ K+ DG KYPEL L+KTLDRE QS H LVLTALDGG PP SGT ++RI V DANDNPP
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGE 296
VF++DVYRVSLRE+VPPGT++L+V ATDQDEGINSEITYSF+ + +FSL+ +G
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
I TQ+ LDFEE + Y++ +E +D G L +C V + + DENDNSPE+ SL + I+E++
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
PG ++AL K DQDSGENGEV C L VPFKI SSS N YKLVTD LDREQTPEYNV
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TI ATDRGKPPLSSS ++ LHI DVNDNAPVF Q++YLV VPENN PGASIAQV ASD D
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
GLNG+VSYS++ASDLE L+SYVS+SAQSGVVFAQRAFD+EQLRTFELTLQARDQGSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HLVFADSLQEVLPD +D P PSD QAE+QFYLVVALALISVLFLLAVILA+ALRLR+S S
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCV-AHTGKTEFNFLKCSEQLSSGQDI 775
P A CF+ LC KSGPV PPNYS+GTLPY+YN CV EFNF + + QD
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
Query: 776 LCGDS 780
L DS
Sbjct: 781 LNKDS 785
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1060 bits (2741), Expect = 0.0
Identities = 547/785 (69%), Positives = 625/785 (79%), Gaps = 5/785 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG + RA VLF LL LF P LCE IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
+ R+LRVS+EK +F+V A+SG+LLV R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V IED+NDH P+F ++ L+ISES G ILE AED DI +NSL KY+LS N FSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
+ K+ DG KYPEL L+KTLDRE QS H LVLTALDGG PP SGT ++RI V DANDNPP
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGE 296
VF++DVYRVSLRE+VPPGT++L+V ATDQDEGINSEITYSF+ + +FSL+ +G
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
I TQ+ LDFEE + Y++ +E +D G L +C V + + DENDNSPE+ SL + I+E++
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
PG ++AL K DQDSGENGEV C L VPFKI SSS N YKLVTD LDREQTPEYNV
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TI ATDRGKPPLSSS ++ LHI DVNDNAPVF Q++YLV VPENN PGASIAQV ASD D
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
GLNG+VSYS++ASDLE L+SYVS+SAQSGVVFAQRAFD+EQLRTFELTLQARDQGSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HLVFADSLQEVLPD +D P PSD QAE+QFYLVVALALISVLFLLAVILA+ALRLR+S S
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCV-AHTGKTEFNFLKCSEQLSSGQDI 775
P A CF+ LC KSGPV PPNYS+GTLPY+YN CV EFNF + + QD
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
Query: 776 LCGDS 780
L DS
Sbjct: 781 LNKDS 785
>gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precursor
[Homo sapiens]
Length = 814
Score = 1040 bits (2689), Expect = 0.0
Identities = 540/806 (66%), Positives = 634/806 (78%), Gaps = 13/806 (1%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG+ +G G A + +LFLFLLSL L E IRY IPEE+ +GS+VGNLA DLGF V +
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTR LRV +EK +FTVS E+G LLVS R+DREEICGKK C LEFE VAE PLNF+HV
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V I+DIND+ P F+QN EL+ISE A G F LE A+D D+G+NSLQ+Y LS +P FSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
I KE DGS+YPEL L+ LDRE+Q +H LVLTA+DGG P S TT++R+ V DANDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG----QIFSLNSKSGE 296
VF +D+YRV++ EN+P G++VL+V A D DEGIN+EI Y+F G Q+F L+SK+GE
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
+TT +LDFEE Y++ VE +DGG A C V+I+I DENDN+PE+T S + I E+A
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
GT +ALIK HD DSG NGE+ CQL+G PFKI+ +KN+Y+LVTDG LDREQ PEYNV
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TITATD+G PPLSSS ++ LHI DVNDN PVFHQASY V V ENNPPGASIA V ASD D
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
LG NG VSY I+ASDLEP L+SYVS+SA+SGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
LSANVSLRVLV DRNDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HL+FADSLQE+ PD++DRP PSDPQAELQF+LVVALALISVLFLLAVILA++LRLR SS
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775
PA FQPG+C K+ P V P YS+ TLPYSYN C A H+ TEF FL + ++ QD+
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 776 LCGDSSGALFPLCNSSESTSHPELVS 801
LC ++S ES +PE+ S
Sbjct: 781 LCDEASW--------FESNDNPEMPS 798
>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1040 bits (2689), Expect = 0.0
Identities = 540/806 (66%), Positives = 634/806 (78%), Gaps = 13/806 (1%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG+ +G G A + +LFLFLLSL L E IRY IPEE+ +GS+VGNLA DLGF V +
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTR LRV +EK +FTVS E+G LLVS R+DREEICGKK C LEFE VAE PLNF+HV
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V I+DIND+ P F+QN EL+ISE A G F LE A+D D+G+NSLQ+Y LS +P FSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
I KE DGS+YPEL L+ LDRE+Q +H LVLTA+DGG P S TT++R+ V DANDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG----QIFSLNSKSGE 296
VF +D+YRV++ EN+P G++VL+V A D DEGIN+EI Y+F G Q+F L+SK+GE
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
+TT +LDFEE Y++ VE +DGG A C V+I+I DENDN+PE+T S + I E+A
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
GT +ALIK HD DSG NGE+ CQL+G PFKI+ +KN+Y+LVTDG LDREQ PEYNV
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TITATD+G PPLSSS ++ LHI DVNDN PVFHQASY V V ENNPPGASIA V ASD D
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
LG NG VSY I+ASDLEP L+SYVS+SA+SGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
LSANVSLRVLV DRNDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HL+FADSLQE+ PD++DRP PSDPQAELQF+LVVALALISVLFLLAVILA++LRLR SS
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775
PA FQPG+C K+ P V P YS+ TLPYSYN C A H+ TEF FL + ++ QD+
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 776 LCGDSSGALFPLCNSSESTSHPELVS 801
LC ++S ES +PE+ S
Sbjct: 781 LCDEASW--------FESNDNPEMPS 798
>gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precursor
[Homo sapiens]
Length = 813
Score = 702 bits (1811), Expect = 0.0
Identities = 368/719 (51%), Positives = 482/719 (67%), Gaps = 14/719 (1%)
Query: 2 GSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQEL 61
G G GEL +L LL C QIRY +PEE+ KGS VGN+A DLG QEL
Sbjct: 7 GWGCGEL-------LLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQEL 59
Query: 62 PTRKLRVSSE--KPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHV 119
R +R+ S F ++ SG L+ + R+DREE+C + P C + F + EN + Y V
Sbjct: 60 AERGVRIVSRGRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGV 119
Query: 120 NVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFS 179
VEI DIND+ P+F +++++E+A GTR +L A DAD+G+NSL+ Y+LS N FS
Sbjct: 120 EVEIIDINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFS 179
Query: 180 LIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNP 239
L + DG KYPEL LE+ LDRE+++ H L+LTALDGG P LSGTT +R+ V DANDN
Sbjct: 180 LDVVSGTDGQKYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNA 239
Query: 240 PVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSG 295
P+F Y VS+ EN+P GT +L ++ATD DEGIN ++TYSF + + F L+S G
Sbjct: 240 PLFTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLG 299
Query: 296 EITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILEN 355
EI+T + LD+EE++ Y M V +DGG LVA V + +QD NDN+PEV SL I E+
Sbjct: 300 EISTLQSLDYEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISED 359
Query: 356 AVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYN 415
+PGT+IAL +HD DSGENGE+ C + +PFK+ S N Y L+T LDRE+T +YN
Sbjct: 360 CLPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYN 419
Query: 416 VTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDL 475
+T+T D G PPLS+ + L + DVNDN P F QASY SV ENNP G SI V A D
Sbjct: 420 ITLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDP 479
Query: 476 DLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGS 535
D G N +V+YS+ + L+SYVS+++ +GV++A R+FDYEQLR +L + A D G+
Sbjct: 480 DSGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGN 539
Query: 536 PALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSG 595
P LS+NVSL + V D+NDN P +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG
Sbjct: 540 PPLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 599
Query: 596 HNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATAT 655
NAWLSY +L+ASEPGLF++GL TGEVRTARAL DRDA +Q L+VAV D GQPPLSAT T
Sbjct: 600 QNAWLSYRLLKASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFT 659
Query: 656 LHLVFADSLQEVLPDITDRPVPSDPQ-AELQFYLVVALALISVLFLLAVILAVALRLRR 713
+ + AD + ++L D+ P DP+ +L YLVVA+A +S +FL VI+ + LRLRR
Sbjct: 660 VTVAVADRIPDILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRR 718
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 702 bits (1811), Expect = 0.0
Identities = 368/719 (51%), Positives = 482/719 (67%), Gaps = 14/719 (1%)
Query: 2 GSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQEL 61
G G GEL +L LL C QIRY +PEE+ KGS VGN+A DLG QEL
Sbjct: 7 GWGCGEL-------LLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQEL 59
Query: 62 PTRKLRVSSE--KPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHV 119
R +R+ S F ++ SG L+ + R+DREE+C + P C + F + EN + Y V
Sbjct: 60 AERGVRIVSRGRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGV 119
Query: 120 NVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFS 179
VEI DIND+ P+F +++++E+A GTR +L A DAD+G+NSL+ Y+LS N FS
Sbjct: 120 EVEIIDINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFS 179
Query: 180 LIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNP 239
L + DG KYPEL LE+ LDRE+++ H L+LTALDGG P LSGTT +R+ V DANDN
Sbjct: 180 LDVVSGTDGQKYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNA 239
Query: 240 PVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSG 295
P+F Y VS+ EN+P GT +L ++ATD DEGIN ++TYSF + + F L+S G
Sbjct: 240 PLFTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLG 299
Query: 296 EITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILEN 355
EI+T + LD+EE++ Y M V +DGG LVA V + +QD NDN+PEV SL I E+
Sbjct: 300 EISTLQSLDYEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISED 359
Query: 356 AVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYN 415
+PGT+IAL +HD DSGENGE+ C + +PFK+ S N Y L+T LDRE+T +YN
Sbjct: 360 CLPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYN 419
Query: 416 VTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDL 475
+T+T D G PPLS+ + L + DVNDN P F QASY SV ENNP G SI V A D
Sbjct: 420 ITLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDP 479
Query: 476 DLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGS 535
D G N +V+YS+ + L+SYVS+++ +GV++A R+FDYEQLR +L + A D G+
Sbjct: 480 DSGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGN 539
Query: 536 PALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSG 595
P LS+NVSL + V D+NDN P +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG
Sbjct: 540 PPLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 599
Query: 596 HNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATAT 655
NAWLSY +L+ASEPGLF++GL TGEVRTARAL DRDA +Q L+VAV D GQPPLSAT T
Sbjct: 600 QNAWLSYRLLKASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFT 659
Query: 656 LHLVFADSLQEVLPDITDRPVPSDPQ-AELQFYLVVALALISVLFLLAVILAVALRLRR 713
+ + AD + ++L D+ P DP+ +L YLVVA+A +S +FL VI+ + LRLRR
Sbjct: 660 VTVAVADRIPDILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRR 718
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 694 bits (1792), Expect = 0.0
Identities = 358/705 (50%), Positives = 476/705 (67%), Gaps = 7/705 (0%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
+L L L A I Y +PEE KGS VGN+A DLG QEL +R+ S P
Sbjct: 14 MLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGRMP 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F ++ SG L+ + R+DREE+C + C + F + E+ + + V VEI DIND+TP+F
Sbjct: 74 LFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTPQF 133
Query: 134 TQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPE 193
E +++E PGTR L +D D+G+NSLQ Y+LS NP FSL +++ DG ++PE
Sbjct: 134 QLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQHPE 193
Query: 194 LALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRE 253
+ L+ LDRE+++ H L+LTA DGG P SGT + IQV DANDNPP F + Y +++ E
Sbjct: 194 MVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVPE 253
Query: 254 NVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGEITTQKKLDFEETK 309
NVP GT +L V+ATD DEG N E+TYSF+ R QIF L+S +GEI+ ++ LDFEE K
Sbjct: 254 NVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEEYK 313
Query: 310 EYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHD 369
YSM V+ +DG GL+A+ V I + D NDN+PEVT S+ + EN PGT+IALI +HD
Sbjct: 314 MYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISVHD 373
Query: 370 QDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLS 429
QDSG+NG C + G +PFK+ N Y+LVT+ TLDRE YN+TITA D+G P LS
Sbjct: 374 QDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPALS 433
Query: 430 SSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMA 489
+ + L + D+NDN+PVFHQ SY +PENNP GASI V A DLD N Q++YS++
Sbjct: 434 TETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSLIE 493
Query: 490 SDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVG 549
++ L++Y+S+++ +GV++A R+FDYEQ R +L + ARD G P LS+NVSL + +
Sbjct: 494 DTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFLL 553
Query: 550 DRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D+NDNAP +LYPAL DGS ++ P +AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDILA 673
Query: 670 DITD-RPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRR 713
D+ P ++L YLVVA A +S +FL VI+ +A RLRR
Sbjct: 674 DLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRR 718
>gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precursor
[Homo sapiens]
Length = 823
Score = 694 bits (1792), Expect = 0.0
Identities = 358/705 (50%), Positives = 476/705 (67%), Gaps = 7/705 (0%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
+L L L A I Y +PEE KGS VGN+A DLG QEL +R+ S P
Sbjct: 14 MLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGRMP 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F ++ SG L+ + R+DREE+C + C + F + E+ + + V VEI DIND+TP+F
Sbjct: 74 LFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTPQF 133
Query: 134 TQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPE 193
E +++E PGTR L +D D+G+NSLQ Y+LS NP FSL +++ DG ++PE
Sbjct: 134 QLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQHPE 193
Query: 194 LALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRE 253
+ L+ LDRE+++ H L+LTA DGG P SGT + IQV DANDNPP F + Y +++ E
Sbjct: 194 MVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVPE 253
Query: 254 NVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGEITTQKKLDFEETK 309
NVP GT +L V+ATD DEG N E+TYSF+ R QIF L+S +GEI+ ++ LDFEE K
Sbjct: 254 NVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEEYK 313
Query: 310 EYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHD 369
YSM V+ +DG GL+A+ V I + D NDN+PEVT S+ + EN PGT+IALI +HD
Sbjct: 314 MYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISVHD 373
Query: 370 QDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLS 429
QDSG+NG C + G +PFK+ N Y+LVT+ TLDRE YN+TITA D+G P LS
Sbjct: 374 QDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPALS 433
Query: 430 SSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMA 489
+ + L + D+NDN+PVFHQ SY +PENNP GASI V A DLD N Q++YS++
Sbjct: 434 TETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSLIE 493
Query: 490 SDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVG 549
++ L++Y+S+++ +GV++A R+FDYEQ R +L + ARD G P LS+NVSL + +
Sbjct: 494 DTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFLL 553
Query: 550 DRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D+NDNAP +LYPAL DGS ++ P +AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDILA 673
Query: 670 DITD-RPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRR 713
D+ P ++L YLVVA A +S +FL VI+ +A RLRR
Sbjct: 674 DLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRR 718
>gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor
[Homo sapiens]
Length = 837
Score = 687 bits (1774), Expect = 0.0
Identities = 361/712 (50%), Positives = 482/712 (67%), Gaps = 7/712 (0%)
Query: 9 GRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRV 68
G RL +L L QIRY +PEE KGS VGN++ DLG +EL R +R+
Sbjct: 8 GDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRI 67
Query: 69 SS--EKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDI 126
S + F V+ SG L+ + R+DREE+C +C L E + E+ L Y V VEI DI
Sbjct: 68 VSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDI 127
Query: 127 NDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQ 186
ND+ P F ++ E+++SE A PG RF L A D D+G+NSLQ Y+LS N FSL ++ +
Sbjct: 128 NDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRT 187
Query: 187 DGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDV 246
DG+K PEL LE +LDRE+++ H L+LTALDGG P G +R+ V D ND+ P+F + V
Sbjct: 188 DGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSV 247
Query: 247 YRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGEITTQKK 302
YRVS+ EN+ GT VL V+ATD DEGIN E+ YSF + +IF L+S++GE+ +
Sbjct: 248 YRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGS 307
Query: 303 LDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLI 362
LDFE+ + Y M ++G+DGGGL T+ I + D NDN+PE+T S + ILEN+ PGT+I
Sbjct: 308 LDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVI 367
Query: 363 ALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATD 422
AL+ + DQDSGENG+V+C + +PFK+ + N YKL+T LDRE YN+T+TATD
Sbjct: 368 ALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATD 427
Query: 423 RGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQ 482
+G PPLS+ V L++ D NDN PVF +SY +PENNP GASI V A D D N
Sbjct: 428 QGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNAL 487
Query: 483 VSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANV 542
V+YS+ ++ + L+SYVS+++ +GV++A ++FDYEQ R EL + ARD G P LS+NV
Sbjct: 488 VTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNV 547
Query: 543 SLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSY 602
SL + V D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY
Sbjct: 548 SLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSY 607
Query: 603 HVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFAD 662
+L+ASEPGLF++G TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD
Sbjct: 608 RLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVAD 667
Query: 663 SLQEVLPDITD-RPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRR 713
S+ EVL D+ + + ++L YLVVA+A +S +FL+ VI+ +ALRL R
Sbjct: 668 SIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWR 719
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 687 bits (1774), Expect = 0.0
Identities = 361/712 (50%), Positives = 482/712 (67%), Gaps = 7/712 (0%)
Query: 9 GRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRV 68
G RL +L L QIRY +PEE KGS VGN++ DLG +EL R +R+
Sbjct: 8 GDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRI 67
Query: 69 SS--EKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDI 126
S + F V+ SG L+ + R+DREE+C +C L E + E+ L Y V VEI DI
Sbjct: 68 VSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDI 127
Query: 127 NDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQ 186
ND+ P F ++ E+++SE A PG RF L A D D+G+NSLQ Y+LS N FSL ++ +
Sbjct: 128 NDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRT 187
Query: 187 DGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDV 246
DG+K PEL LE +LDRE+++ H L+LTALDGG P G +R+ V D ND+ P+F + V
Sbjct: 188 DGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSV 247
Query: 247 YRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGEITTQKK 302
YRVS+ EN+ GT VL V+ATD DEGIN E+ YSF + +IF L+S++GE+ +
Sbjct: 248 YRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGS 307
Query: 303 LDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLI 362
LDFE+ + Y M ++G+DGGGL T+ I + D NDN+PE+T S + ILEN+ PGT+I
Sbjct: 308 LDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVI 367
Query: 363 ALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATD 422
AL+ + DQDSGENG+V+C + +PFK+ + N YKL+T LDRE YN+T+TATD
Sbjct: 368 ALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATD 427
Query: 423 RGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQ 482
+G PPLS+ V L++ D NDN PVF +SY +PENNP GASI V A D D N
Sbjct: 428 QGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNAL 487
Query: 483 VSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANV 542
V+YS+ ++ + L+SYVS+++ +GV++A ++FDYEQ R EL + ARD G P LS+NV
Sbjct: 488 VTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNV 547
Query: 543 SLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSY 602
SL + V D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY
Sbjct: 548 SLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSY 607
Query: 603 HVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFAD 662
+L+ASEPGLF++G TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD
Sbjct: 608 RLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVAD 667
Query: 663 SLQEVLPDITD-RPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRR 713
S+ EVL D+ + + ++L YLVVA+A +S +FL+ VI+ +ALRL R
Sbjct: 668 SIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWR 719
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 684 bits (1766), Expect = 0.0
Identities = 361/705 (51%), Positives = 476/705 (67%), Gaps = 7/705 (0%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRV--SSEKP 73
VL LL C QIRY +PEE+ KGS VG+++ DLG +EL R +R+
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F ++ SG L+ + R+DREE+C C L + + E+ + Y V VE+ DIND+ P F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 TQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPE 193
++ E++ISE+A RF L A D DIG NSLQ Y+LS N FSLI++ DGSKYPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 LALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRE 253
L L++ LDRE+++ H LVLTA DGG P +GT +R+ V DANDN P F + YR S+ E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 NVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGEITTQKKLDFEETK 309
N+ GT +L V+ATD DEG+N+E+ YSF + Q+F L+ SG I+T +LD EE+
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 310 EYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHD 369
Y M V+ D G A+ V I + D NDN+PEV SL + EN+ GTLIAL+ ++D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373
Query: 370 QDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLS 429
QDS ENG+V C +QG +PFK+ S N Y LVTD LDREQ P YN+T+TATDRG PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433
Query: 430 SSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMA 489
+ + L++ D NDN PVF QASY +PENNP G S+ V A D D N Q++YS+
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493
Query: 490 SDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVG 549
+ ++ +L+SYVS+++ +GV++A +FDYEQ R ++ + ARD G P LS+NVSL + V
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553
Query: 550 DRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ +VL
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673
Query: 670 DITDRPVPSDPQ-AELQFYLVVALALISVLFLLAVILAVALRLRR 713
D+ P++ + ++L YLVVA+A +S +FL VIL +ALRLRR
Sbjct: 674 DLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRR 718
>gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 684 bits (1766), Expect = 0.0
Identities = 361/705 (51%), Positives = 476/705 (67%), Gaps = 7/705 (0%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRV--SSEKP 73
VL LL C QIRY +PEE+ KGS VG+++ DLG +EL R +R+
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F ++ SG L+ + R+DREE+C C L + + E+ + Y V VE+ DIND+ P F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 TQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPE 193
++ E++ISE+A RF L A D DIG NSLQ Y+LS N FSLI++ DGSKYPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 LALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRE 253
L L++ LDRE+++ H LVLTA DGG P +GT +R+ V DANDN P F + YR S+ E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 NVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGEITTQKKLDFEETK 309
N+ GT +L V+ATD DEG+N+E+ YSF + Q+F L+ SG I+T +LD EE+
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 310 EYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHD 369
Y M V+ D G A+ V I + D NDN+PEV SL + EN+ GTLIAL+ ++D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373
Query: 370 QDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLS 429
QDS ENG+V C +QG +PFK+ S N Y LVTD LDREQ P YN+T+TATDRG PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433
Query: 430 SSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMA 489
+ + L++ D NDN PVF QASY +PENNP G S+ V A D D N Q++YS+
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493
Query: 490 SDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVG 549
+ ++ +L+SYVS+++ +GV++A +FDYEQ R ++ + ARD G P LS+NVSL + V
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553
Query: 550 DRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ +VL
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673
Query: 670 DITDRPVPSDPQ-AELQFYLVVALALISVLFLLAVILAVALRLRR 713
D+ P++ + ++L YLVVA+A +S +FL VIL +ALRLRR
Sbjct: 674 DLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRR 718
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 682 bits (1761), Expect = 0.0
Identities = 363/705 (51%), Positives = 476/705 (67%), Gaps = 7/705 (0%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
VL L LL A QIRY IPEE+ KGS VGN+ DLG QEL +R+ S
Sbjct: 14 VLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRMQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F+++ +G L+ + R+DREE+C + P C + F + E+ LN Y V VEI DIND+TP+F
Sbjct: 74 LFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPRF 133
Query: 134 TQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPE 193
+ E++I E+A P +RF L D D+G+NSLQ +KLS N FS+ ++ + G KYPE
Sbjct: 134 LKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYPE 193
Query: 194 LALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRE 253
L LE TLDRE ++ +RLVLTA+DGG P S ++ + V D NDN P+F + VYRVS+ E
Sbjct: 194 LVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVPE 253
Query: 254 NVPPGTTVLQVSATDQDEGINSEITYSFYRT----GQIFSLNSKSGEITTQKKLDFEETK 309
N+P GT VL V+ATDQDEG++ E+TYSF + QIF LN +GEI+T LD+E++
Sbjct: 254 NLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSANLDYEDSS 313
Query: 310 EYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHD 369
Y + VE RDG GL + V I I D NDN PEV S I E+A PGT+IAL ++ D
Sbjct: 314 FYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVFD 373
Query: 370 QDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLS 429
+DSG NG V C + +PF++ S N Y+LVT+ LDRE+ YN+T+TATD+G PPLS
Sbjct: 374 RDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPLS 433
Query: 430 SSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMA 489
+ + L++ D NDN P F +SY V V ENNP GASI V A D D+ N QVSYS+
Sbjct: 434 TETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLAE 493
Query: 490 SDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVG 549
L+ L+SYVS+++ +G+++A R+FDYEQLR +L + A D G P LS+NVSL + V
Sbjct: 494 DTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFVL 553
Query: 550 DRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILA 673
Query: 670 DITD-RPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRR 713
D+ P ++L YLVVA+A +S +FL VI+ +ALRL+R
Sbjct: 674 DLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQR 718
>gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 682 bits (1761), Expect = 0.0
Identities = 363/705 (51%), Positives = 476/705 (67%), Gaps = 7/705 (0%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
VL L LL A QIRY IPEE+ KGS VGN+ DLG QEL +R+ S
Sbjct: 14 VLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRMQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F+++ +G L+ + R+DREE+C + P C + F + E+ LN Y V VEI DIND+TP+F
Sbjct: 74 LFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPRF 133
Query: 134 TQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPE 193
+ E++I E+A P +RF L D D+G+NSLQ +KLS N FS+ ++ + G KYPE
Sbjct: 134 LKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYPE 193
Query: 194 LALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRE 253
L LE TLDRE ++ +RLVLTA+DGG P S ++ + V D NDN P+F + VYRVS+ E
Sbjct: 194 LVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVPE 253
Query: 254 NVPPGTTVLQVSATDQDEGINSEITYSFYRT----GQIFSLNSKSGEITTQKKLDFEETK 309
N+P GT VL V+ATDQDEG++ E+TYSF + QIF LN +GEI+T LD+E++
Sbjct: 254 NLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSANLDYEDSS 313
Query: 310 EYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHD 369
Y + VE RDG GL + V I I D NDN PEV S I E+A PGT+IAL ++ D
Sbjct: 314 FYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVFD 373
Query: 370 QDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLS 429
+DSG NG V C + +PF++ S N Y+LVT+ LDRE+ YN+T+TATD+G PPLS
Sbjct: 374 RDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPLS 433
Query: 430 SSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMA 489
+ + L++ D NDN P F +SY V V ENNP GASI V A D D+ N QVSYS+
Sbjct: 434 TETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLAE 493
Query: 490 SDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVG 549
L+ L+SYVS+++ +G+++A R+FDYEQLR +L + A D G P LS+NVSL + V
Sbjct: 494 DTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFVL 553
Query: 550 DRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILA 673
Query: 670 DITD-RPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRR 713
D+ P ++L YLVVA+A +S +FL VI+ +ALRL+R
Sbjct: 674 DLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQR 718
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 681 bits (1757), Expect = 0.0
Identities = 349/704 (49%), Positives = 475/704 (67%), Gaps = 7/704 (0%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
VL LL + A QIRY +PEE KG +VGN++ DL +EL R++R+ S
Sbjct: 14 VLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGRTQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F+++ SG L+ + R+DREE+C + P C + F+ + E+ + Y + +E+ DIND PKF
Sbjct: 74 LFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAPKF 133
Query: 134 TQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPE 193
S E++I+E A PG R+ L A D D+G+NSLQ Y+LS N FSL ++ +G+ PE
Sbjct: 134 QAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINPE 193
Query: 194 LALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRE 253
L LE+ LDRE+ + H LVLTA DGG P S T + + V D NDN PVF + +YRV + E
Sbjct: 194 LVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKVLE 253
Query: 254 NVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGEITTQKKLDFEETK 309
NVPPGT +L +A+D DEGIN ++ Y F++ + +F LN +GEI+T K LD+EE
Sbjct: 254 NVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEECS 313
Query: 310 EYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHD 369
Y M ++ DGGGL V I+++D NDN PEVT SL + E+A GT+I L HD
Sbjct: 314 FYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNAHD 373
Query: 370 QDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLS 429
+DSG+NG+V C +Q + F + +S ++ Y+L+T LDRE+ EYN+T+TATDRG PPLS
Sbjct: 374 RDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPPLS 433
Query: 430 SSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMA 489
+ I + L + D+NDN P F QASY V +PENN G SI V A D D N +V YS+
Sbjct: 434 TEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLAE 493
Query: 490 SDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVG 549
++ L++YVS+++ +GV++A +FDYEQ R ++ + A D GSP LS+NVSLR+ V
Sbjct: 494 DTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFVL 553
Query: 550 DRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY + +ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDILA 673
Query: 670 DITDRPVPSDPQA-ELQFYLVVALALISVLFLLAVILAVALRLR 712
D+ +P+D +A +L YLVVA+A++S +FL VI +ALRLR
Sbjct: 674 DLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLR 717
>gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor
[Homo sapiens]
Length = 828
Score = 681 bits (1757), Expect = 0.0
Identities = 349/704 (49%), Positives = 475/704 (67%), Gaps = 7/704 (0%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
VL LL + A QIRY +PEE KG +VGN++ DL +EL R++R+ S
Sbjct: 14 VLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGRTQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F+++ SG L+ + R+DREE+C + P C + F+ + E+ + Y + +E+ DIND PKF
Sbjct: 74 LFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAPKF 133
Query: 134 TQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPE 193
S E++I+E A PG R+ L A D D+G+NSLQ Y+LS N FSL ++ +G+ PE
Sbjct: 134 QAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINPE 193
Query: 194 LALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRE 253
L LE+ LDRE+ + H LVLTA DGG P S T + + V D NDN PVF + +YRV + E
Sbjct: 194 LVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKVLE 253
Query: 254 NVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGEITTQKKLDFEETK 309
NVPPGT +L +A+D DEGIN ++ Y F++ + +F LN +GEI+T K LD+EE
Sbjct: 254 NVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEECS 313
Query: 310 EYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHD 369
Y M ++ DGGGL V I+++D NDN PEVT SL + E+A GT+I L HD
Sbjct: 314 FYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNAHD 373
Query: 370 QDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLS 429
+DSG+NG+V C +Q + F + +S ++ Y+L+T LDRE+ EYN+T+TATDRG PPLS
Sbjct: 374 RDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPPLS 433
Query: 430 SSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMA 489
+ I + L + D+NDN P F QASY V +PENN G SI V A D D N +V YS+
Sbjct: 434 TEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLAE 493
Query: 490 SDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVG 549
++ L++YVS+++ +GV++A +FDYEQ R ++ + A D GSP LS+NVSLR+ V
Sbjct: 494 DTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFVL 553
Query: 550 DRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY + +ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDILA 673
Query: 670 DITDRPVPSDPQA-ELQFYLVVALALISVLFLLAVILAVALRLR 712
D+ +P+D +A +L YLVVA+A++S +FL VI +ALRLR
Sbjct: 674 DLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLR 717
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 672 bits (1733), Expect = 0.0
Identities = 344/704 (48%), Positives = 471/704 (66%), Gaps = 7/704 (0%)
Query: 17 LFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPY 74
L LL C QIRY + EE+ KGS VGN+A DLG +EL R +R+ S
Sbjct: 15 LLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQL 74
Query: 75 FTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFT 134
F+++ +SG L+ + R+DREE+C + P C ++ + E+ L + V +EI+DIND+ P F
Sbjct: 75 FSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFP 134
Query: 135 QNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPEL 194
E++I E PGTRF ++ A D D+G+NSLQ YKLS N FSL + +G+KYPEL
Sbjct: 135 TEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPEL 194
Query: 195 ALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLREN 254
LE+ LDRE++ H+LVL A DGG P SG +++ V DANDNPP+F + YRVS+ EN
Sbjct: 195 VLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWEN 254
Query: 255 VPPGTTVLQVSATDQDEGINSEITYSFYRT----GQIFSLNSKSGEITTQKKLDFEETKE 310
VP GT +L V+ATD DEG N++++Y + +IF LNS SGE++ K LD+E+
Sbjct: 255 VPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMF 314
Query: 311 YSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQ 370
Y + +E +DG GL+++ + + + D NDN+PE+T SL + E G IALI +HD+
Sbjct: 315 YEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDR 374
Query: 371 DSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSS 430
DSG+NG+V + G +PFK+ S Y+LVT +LDREQ EYN+++ A+D G PPLS+
Sbjct: 375 DSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLST 434
Query: 431 SISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMAS 490
+ LH+ D+NDN P F SY +PENNP GASI V A D D N +++Y++
Sbjct: 435 ETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTED 494
Query: 491 DLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGD 550
L+ L+S+VS+++ +GV++A R+FDYEQ R +L + A D G+P LS+NVSL + V D
Sbjct: 495 TLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLD 554
Query: 551 RNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASEP
Sbjct: 555 QNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEP 614
Query: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 670
GLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L D
Sbjct: 615 GLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILAD 674
Query: 671 ITD-RPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRR 713
+ P ++L YLVVA+A +S +FL VI+ +ALRLRR
Sbjct: 675 LGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRR 718
>gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precursor
[Homo sapiens]
Length = 829
Score = 672 bits (1733), Expect = 0.0
Identities = 344/704 (48%), Positives = 471/704 (66%), Gaps = 7/704 (0%)
Query: 17 LFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPY 74
L LL C QIRY + EE+ KGS VGN+A DLG +EL R +R+ S
Sbjct: 15 LLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQL 74
Query: 75 FTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFT 134
F+++ +SG L+ + R+DREE+C + P C ++ + E+ L + V +EI+DIND+ P F
Sbjct: 75 FSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFP 134
Query: 135 QNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPEL 194
E++I E PGTRF ++ A D D+G+NSLQ YKLS N FSL + +G+KYPEL
Sbjct: 135 TEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPEL 194
Query: 195 ALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLREN 254
LE+ LDRE++ H+LVL A DGG P SG +++ V DANDNPP+F + YRVS+ EN
Sbjct: 195 VLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWEN 254
Query: 255 VPPGTTVLQVSATDQDEGINSEITYSFYRT----GQIFSLNSKSGEITTQKKLDFEETKE 310
VP GT +L V+ATD DEG N++++Y + +IF LNS SGE++ K LD+E+
Sbjct: 255 VPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMF 314
Query: 311 YSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQ 370
Y + +E +DG GL+++ + + + D NDN+PE+T SL + E G IALI +HD+
Sbjct: 315 YEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDR 374
Query: 371 DSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSS 430
DSG+NG+V + G +PFK+ S Y+LVT +LDREQ EYN+++ A+D G PPLS+
Sbjct: 375 DSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLST 434
Query: 431 SISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMAS 490
+ LH+ D+NDN P F SY +PENNP GASI V A D D N +++Y++
Sbjct: 435 ETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTED 494
Query: 491 DLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGD 550
L+ L+S+VS+++ +GV++A R+FDYEQ R +L + A D G+P LS+NVSL + V D
Sbjct: 495 TLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLD 554
Query: 551 RNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASEP
Sbjct: 555 QNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEP 614
Query: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 670
GLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L D
Sbjct: 615 GLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILAD 674
Query: 671 ITD-RPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRR 713
+ P ++L YLVVA+A +S +FL VI+ +ALRLRR
Sbjct: 675 LGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRR 718
>gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 662 bits (1709), Expect = 0.0
Identities = 344/700 (49%), Positives = 462/700 (66%), Gaps = 7/700 (1%)
Query: 21 LLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPYFTVS 78
LL + EQI Y + EE +GSVVGN+A DLG + +EL R +R+ S F ++
Sbjct: 19 LLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFALN 78
Query: 79 AESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSF 138
SG L+ + R+DREE+C + P C E + E+ + V VEI D+ND+ P F
Sbjct: 79 PRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQR 138
Query: 139 ELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELALEK 198
E++++E+ PG RF L A D D+G+NSLQ Y+L+ N FSL ++ DG KYPEL LE+
Sbjct: 139 EIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLER 198
Query: 199 TLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPG 258
LDRE+++ H LVLTA DGG P SGT + I + D NDN PVF + Y VS+RENVP G
Sbjct: 199 ALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPVG 258
Query: 259 TTVLQVSATDQDEGINSEITYSFYRT----GQIFSLNSKSGEITTQKKLDFEETKEYSMV 314
T +L V ATD DEG N ++TYSF + Q+F LNS SG+IT LD+E++ Y +
Sbjct: 259 TRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDID 318
Query: 315 VEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDSGE 374
VE DG GL A+ V + + DENDN+PEVT SL + E++ PGT+IAL +HD DSG
Sbjct: 319 VEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGG 378
Query: 375 NGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSISV 434
NG V C + +PF + + N Y+L+T TLDRE+ EYN+T+TATD+G PPLS+ +
Sbjct: 379 NGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHI 438
Query: 435 ILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDLEP 494
L + D+NDN P F ASY +PENNP GASI + A D D G N +++YS+ +
Sbjct: 439 SLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQG 498
Query: 495 LALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDN 554
L+SYVS+++ +G+++A +FDYEQ R +L + A D G P LS+NVSL + V D+NDN
Sbjct: 499 APLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQNDN 558
Query: 555 APRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFS 614
P +LYP DGS ++ PR+A+ GYLVTKVVAVD DSG NAWLSY +L++SEPGLF+
Sbjct: 559 VPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLFA 618
Query: 615 LGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDR 674
+GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT TL + ADS+ +VL D+
Sbjct: 619 VGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGSL 678
Query: 675 PVPSDP-QAELQFYLVVALALISVLFLLAVILAVALRLRR 713
+DP + L YLVVA+A +S +FL V + +AL+LRR
Sbjct: 679 KPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRR 718
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 662 bits (1709), Expect = 0.0
Identities = 344/700 (49%), Positives = 462/700 (66%), Gaps = 7/700 (1%)
Query: 21 LLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPYFTVS 78
LL + EQI Y + EE +GSVVGN+A DLG + +EL R +R+ S F ++
Sbjct: 19 LLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFALN 78
Query: 79 AESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSF 138
SG L+ + R+DREE+C + P C E + E+ + V VEI D+ND+ P F
Sbjct: 79 PRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQR 138
Query: 139 ELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELALEK 198
E++++E+ PG RF L A D D+G+NSLQ Y+L+ N FSL ++ DG KYPEL LE+
Sbjct: 139 EIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLER 198
Query: 199 TLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPG 258
LDRE+++ H LVLTA DGG P SGT + I + D NDN PVF + Y VS+RENVP G
Sbjct: 199 ALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPVG 258
Query: 259 TTVLQVSATDQDEGINSEITYSFYRT----GQIFSLNSKSGEITTQKKLDFEETKEYSMV 314
T +L V ATD DEG N ++TYSF + Q+F LNS SG+IT LD+E++ Y +
Sbjct: 259 TRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDID 318
Query: 315 VEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDSGE 374
VE DG GL A+ V + + DENDN+PEVT SL + E++ PGT+IAL +HD DSG
Sbjct: 319 VEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGG 378
Query: 375 NGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSISV 434
NG V C + +PF + + N Y+L+T TLDRE+ EYN+T+TATD+G PPLS+ +
Sbjct: 379 NGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHI 438
Query: 435 ILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDLEP 494
L + D+NDN P F ASY +PENNP GASI + A D D G N +++YS+ +
Sbjct: 439 SLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQG 498
Query: 495 LALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDN 554
L+SYVS+++ +G+++A +FDYEQ R +L + A D G P LS+NVSL + V D+NDN
Sbjct: 499 APLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQNDN 558
Query: 555 APRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFS 614
P +LYP DGS ++ PR+A+ GYLVTKVVAVD DSG NAWLSY +L++SEPGLF+
Sbjct: 559 VPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLFA 618
Query: 615 LGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDR 674
+GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT TL + ADS+ +VL D+
Sbjct: 619 VGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGSL 678
Query: 675 PVPSDP-QAELQFYLVVALALISVLFLLAVILAVALRLRR 713
+DP + L YLVVA+A +S +FL V + +AL+LRR
Sbjct: 679 KPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRR 718
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,890,213
Number of Sequences: 37866
Number of extensions: 1464221
Number of successful extensions: 10765
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3180
Number of HSP's gapped (non-prelim): 678
length of query: 818
length of database: 18,247,518
effective HSP length: 111
effective length of query: 707
effective length of database: 14,044,392
effective search space: 9929385144
effective search space used: 9929385144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.