Search of human proteins with 9910346

Search of human proteins with 9910346

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|9910346 chromosome 15 open reading frame 24 [Homo sapiens]
         (242 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|9910346 chromosome 15 open reading frame 24 [Homo sapiens]         483   e-137
gi|23397653 phosphatidylinositol glycan anchor biosynthesis, cla...    32   0.50 
gi|223671856 coiled-coil domain containing 85C [Homo sapiens]          30   2.5  
gi|27734709 nodal modulator 2 isoform 2 [Homo sapiens]                 30   2.5  
gi|51944971 nodal modulator 2 isoform 1 [Homo sapiens]                 30   2.5  
gi|51944969 nodal modulator 3 [Homo sapiens]                           30   2.5  
gi|51944953 nodal modulator 1 [Homo sapiens]                           30   2.5  
gi|40255149 Rho guanine nucleotide exchange factor (GEF) 19 [Hom...    29   4.2  
gi|38202237 transcription factor 21 [Homo sapiens]                     29   4.2  
gi|38202239 transcription factor 21 [Homo sapiens]                     29   4.2  
gi|44917619 kelch domain containing 10 [Homo sapiens]                  29   4.2  
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         29   4.2  
gi|87298828 complement component 1, q subcomponent, B chain prec...    28   7.2  
gi|194272161 1D-myo-inositol-trisphosphate 3-kinase B [Homo sapi...    28   7.2  
gi|21536371 telomerase-associated protein 1 [Homo sapiens]             28   9.4  
gi|13129006 nucleolar protein GU2 [Homo sapiens]                       28   9.4  
gi|153792536 ATPase family, AAA domain containing 2B [Homo sapiens]    28   9.4  

>gi|9910346 chromosome 15 open reading frame 24 [Homo sapiens]
          Length = 242

 Score =  483 bits (1242), Expect = e-137
 Identities = 242/242 (100%), Positives = 242/242 (100%)

Query: 1   MAAALWGFFPVLLLLLLSGDVQSSEVPGAAAEGSGGSGVGIGDRFKIEGRAVVPGVKPQD 60
           MAAALWGFFPVLLLLLLSGDVQSSEVPGAAAEGSGGSGVGIGDRFKIEGRAVVPGVKPQD
Sbjct: 1   MAAALWGFFPVLLLLLLSGDVQSSEVPGAAAEGSGGSGVGIGDRFKIEGRAVVPGVKPQD 60

Query: 61  WISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVVSPAYRFDPVRVDITSKGKMRA 120
           WISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVVSPAYRFDPVRVDITSKGKMRA
Sbjct: 61  WISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVVSPAYRFDPVRVDITSKGKMRA 120

Query: 121 RYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFLMNPMVMMMVLPLLIFVLLP 180
           RYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFLMNPMVMMMVLPLLIFVLLP
Sbjct: 121 RYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFLMNPMVMMMVLPLLIFVLLP 180

Query: 181 KVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFSSKSSGKSSSGSSKTGKSGAGK 240
           KVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFSSKSSGKSSSGSSKTGKSGAGK
Sbjct: 181 KVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFSSKSSGKSSSGSSKTGKSGAGK 240

Query: 241 RR 242
           RR
Sbjct: 241 RR 242


>gi|23397653 phosphatidylinositol glycan anchor biosynthesis, class
           T precursor [Homo sapiens]
          Length = 578

 Score = 32.0 bits (71), Expect = 0.50
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 13/115 (11%)

Query: 112 ITSKGKM-RARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIK------RESWGWTDFLMNP 164
           ITSKGK  +  Y++Y    + ++ P+ L+M    P +   K      R    WT++  +P
Sbjct: 402 ITSKGKENKPSYIHYQPAQDRLQ-PHLLEMLIQLPANSVTKVSIQFERALLKWTEYTPDP 460

Query: 165 MVMMMVLPLLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFS 219
                V P ++  L+P +V     D      +   + NS   + D S +  RL++
Sbjct: 461 NHGFYVSPSVLSALVPSMVAAKPVDW-----EESPLFNSLFPVSDGSNYFVRLYT 510


>gi|223671856 coiled-coil domain containing 85C [Homo sapiens]
          Length = 419

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 14  LLLLSGDVQSSEVPGAAAEGSGGSGVGIGDRFKIEGRAVVPG 55
           L+LL  + +++     AA G GG G G G R  I+ +A + G
Sbjct: 147 LVLLLDEERAALAATGAASGGGGGGGGAGSRSSIDSQASLSG 188


>gi|27734709 nodal modulator 2 isoform 2 [Homo sapiens]
          Length = 1222

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%)

Query: 53  VPGVKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVVSPAYRFDPVRVDI 112
           VPG +PQD            E       DGSF  + +PSG Y    V P YR + +  D+
Sbjct: 255 VPGFQPQDESLVYLCYTVSRE-------DGSFSFYSLPSGGY---TVIPFYRGERITFDV 304


>gi|51944971 nodal modulator 2 isoform 1 [Homo sapiens]
          Length = 1267

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%)

Query: 53  VPGVKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVVSPAYRFDPVRVDI 112
           VPG +PQD            E       DGSF  + +PSG Y    V P YR + +  D+
Sbjct: 255 VPGFQPQDESLVYLCYTVSRE-------DGSFSFYSLPSGGY---TVIPFYRGERITFDV 304


>gi|51944969 nodal modulator 3 [Homo sapiens]
          Length = 1222

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%)

Query: 53  VPGVKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVVSPAYRFDPVRVDI 112
           VPG +PQD            E       DGSF  + +PSG Y    V P YR + +  D+
Sbjct: 255 VPGFQPQDESLVYLCYTVSRE-------DGSFSFYSLPSGGY---TVIPFYRGERITFDV 304


>gi|51944953 nodal modulator 1 [Homo sapiens]
          Length = 1222

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%)

Query: 53  VPGVKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVVSPAYRFDPVRVDI 112
           VPG +PQD            E       DGSF  + +PSG Y    V P YR + +  D+
Sbjct: 255 VPGFQPQDESLVYLCYTVSRE-------DGSFSFYSLPSGGY---TVIPFYRGERITFDV 304


>gi|40255149 Rho guanine nucleotide exchange factor (GEF) 19 [Homo
           sapiens]
          Length = 802

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query: 177 VLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFSSKSSGKSSSGSSKTGKS 236
           V+  + ++T +P +       +++          SE MTRL SS   G++S+  +    S
Sbjct: 165 VVQEQALSTEEPRVELSGSTRVSLEGPERRRFSASELMTRLHSSLRLGRNSAARALISGS 224

Query: 237 GAGKRR 242
           G G  R
Sbjct: 225 GTGAAR 230


>gi|38202237 transcription factor 21 [Homo sapiens]
          Length = 179

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 212 EFMTRLFSSKSSGKSSSGSSKTGKSGAGKRR 242
           EF+T   S++ S    +GS + G+ G GKRR
Sbjct: 30  EFVTSNESTEESSNCENGSPQKGRGGLGKRR 60


>gi|38202239 transcription factor 21 [Homo sapiens]
          Length = 179

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 212 EFMTRLFSSKSSGKSSSGSSKTGKSGAGKRR 242
           EF+T   S++ S    +GS + G+ G GKRR
Sbjct: 30  EFVTSNESTEESSNCENGSPQKGRGGLGKRR 60


>gi|44917619 kelch domain containing 10 [Homo sapiens]
          Length = 442

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 28 GAAAEGSGGSGVGIGDRF-KIEGRAVVPGVKPQDW 61
          G  + GSGG G G  +RF ++ GR  +PG K   W
Sbjct: 28 GGGSGGSGGRGTGQLNRFVQLSGRPHLPGKKKIRW 62


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 17/53 (32%), Positives = 22/53 (41%)

Query: 22   QSSEVPGAAAEGSGGSGVGIGDRFKIEGRAVVPGVKPQDWISAARVLVDGEEH 74
            +  E PGA  E S G+G G   R K       PG +  + +  AR    G  H
Sbjct: 2359 EEEEGPGAGDESSCGTGGGTHRRSKKAKAPERPGTRVSERLRGARAETQGANH 2411


>gi|87298828 complement component 1, q subcomponent, B chain
          precursor [Homo sapiens]
          Length = 253

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 6  WGFFPVLLLLLLSGDVQSSEVPGAAAEGSGGSGV-GIGDRFKIEGRAVVPGVK 57
          WG  PVL+LLLL G +  S+   +        G+ GI      +G+   PG+K
Sbjct: 7  WGSIPVLMLLLLLGLIDISQAQLSCTGPPAIPGIPGIPGTPGPDGQPGTPGIK 59


>gi|194272161 1D-myo-inositol-trisphosphate 3-kinase B [Homo
           sapiens]
          Length = 946

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 216 RLFSSKSSGKSSSGSSKTGKSGAGKRR 242
           RL SS  SG  SSGSS +  S AG+ R
Sbjct: 81  RLNSSSGSGSGSSGSSVSSPSWAGRLR 107


>gi|21536371 telomerase-associated protein 1 [Homo sapiens]
          Length = 2627

 Score = 27.7 bits (60), Expect = 9.4
 Identities = 18/71 (25%), Positives = 31/71 (43%)

Query: 157  WTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTR 216
            W+ +  NPM++       IFVL PK         ++E  +    LN +  L + S  +  
Sbjct: 2407 WSSYTENPMILSTHKEYGIFVLQPKDPGVLSFLRQKESGEFEERLNFDINLENPSRTLIS 2466

Query: 217  LFSSKSSGKSS 227
            +  +K   +SS
Sbjct: 2467 ITQAKPESESS 2477


>gi|13129006 nucleolar protein GU2 [Homo sapiens]
          Length = 737

 Score = 27.7 bits (60), Expect = 9.4
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 182 VVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFSSKSSGKSSSGSSKTGKSG 237
           V  T    ++ E   S  +L+   +LP++ E+     SS S  +S   S ++G+SG
Sbjct: 636 VPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSNSRQRSGWSSGRSGRSG 691


>gi|153792536 ATPase family, AAA domain containing 2B [Homo
          sapiens]
          Length = 1458

 Score = 27.7 bits (60), Expect = 9.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 18 SGDVQSSEVPGAAAEGSGGSGVGIGDRFKIE 48
          S   +++  P A A GSGG+GV + +  K+E
Sbjct: 45 SSKTRAASCPAAKAGGSGGAGVTLDEARKVE 75


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,051,778
Number of Sequences: 37866
Number of extensions: 394543
Number of successful extensions: 1662
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1649
Number of HSP's gapped (non-prelim): 25
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.