Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 94721265
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94721265 sarcoglycan zeta [Homo sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94721265 sarcoglycan zeta [Homo sapiens] 618 e-177
gi|189571662 delta-sarcoglycan isoform 3 [Homo sapiens] 339 2e-93
gi|21314619 delta-sarcoglycan isoform 1 [Homo sapiens] 339 2e-93
gi|4557847 gamma sarcoglycan [Homo sapiens] 339 2e-93
gi|27477101 delta-sarcoglycan isoform 2 [Homo sapiens] 282 3e-76
gi|4506913 sarcoglycan, beta [Homo sapiens] 54 1e-07
gi|57242761 receptor (TNFRSF)-interacting serine-threonine kinas... 32 0.72
gi|4506751 restin isoform a [Homo sapiens] 29 4.7
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 28 8.0
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 28 8.0
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 28 8.0
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens] 28 8.0
gi|112363080 microtubule associated serine/threonine kinase 2 [H... 28 8.0
gi|145275198 ADAMTS-like 3 precursor [Homo sapiens] 28 8.0
gi|219555700 leucine rich repeat containing 27 isoform a [Homo s... 28 8.0
gi|55741567 leucine rich repeat containing 27 isoform a [Homo sa... 28 8.0
gi|154426306 kinesin family member 24 [Homo sapiens] 28 8.0
gi|148727255 microtubule associated serine/threonine kinase fami... 28 8.0
>gi|94721265 sarcoglycan zeta [Homo sapiens]
Length = 312
Score = 618 bits (1594), Expect = e-177
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MDRSTNLDIEELKMTREQYILATQQNNLPRTENAQLYPVGIYGWRKRCLYFFVLLLLVTM 60
MDRSTNLDIEELKMTREQYILATQQNNLPRTENAQLYPVGIYGWRKRCLYFFVLLLLVTM
Sbjct: 1 MDRSTNLDIEELKMTREQYILATQQNNLPRTENAQLYPVGIYGWRKRCLYFFVLLLLVTM 60
Query: 61 IVNLAMTIWILKVMNFTVDGMGNLRVTKKGIRLEGISEFLLPLYVKEIHSRKDSPLVLQS 120
IVNLAMTIWILKVMNFTVDGMGNLRVTKKGIRLEGISEFLLPLYVKEIHSRKDSPLVLQS
Sbjct: 61 IVNLAMTIWILKVMNFTVDGMGNLRVTKKGIRLEGISEFLLPLYVKEIHSRKDSPLVLQS 120
Query: 121 DRNVTVNARNHMGQLTGQLTIGADAVEAQCKRFEVRASEDGRVLFSADEDEITIGAEKLK 180
DRNVTVNARNHMGQLTGQLTIGADAVEAQCKRFEVRASEDGRVLFSADEDEITIGAEKLK
Sbjct: 121 DRNVTVNARNHMGQLTGQLTIGADAVEAQCKRFEVRASEDGRVLFSADEDEITIGAEKLK 180
Query: 181 VTGTEGAVFGHSVETPHIRAEPSQDLRLESPTRSLIMEAPRGVQVSAAAGDFKATCRKEL 240
VTGTEGAVFGHSVETPHIRAEPSQDLRLESPTRSLIMEAPRGVQVSAAAGDFKATCRKEL
Sbjct: 181 VTGTEGAVFGHSVETPHIRAEPSQDLRLESPTRSLIMEAPRGVQVSAAAGDFKATCRKEL 240
Query: 241 HLQSTEGEIFLNAETIKLGNLPTGSFSSSSPSSSSSRQTVYELCVCPNGKLYLSPAGVGS 300
HLQSTEGEIFLNAETIKLGNLPTGSFSSSSPSSSSSRQTVYELCVCPNGKLYLSPAGVGS
Sbjct: 241 HLQSTEGEIFLNAETIKLGNLPTGSFSSSSPSSSSSRQTVYELCVCPNGKLYLSPAGVGS 300
Query: 301 TCQSSSNICLWS 312
TCQSSSNICLWS
Sbjct: 301 TCQSSSNICLWS 312
>gi|189571662 delta-sarcoglycan isoform 3 [Homo sapiens]
Length = 289
Score = 339 bits (870), Expect = 2e-93
Identities = 169/297 (56%), Positives = 227/297 (76%), Gaps = 8/297 (2%)
Query: 14 MTREQYILATQQNNLPRTENAQLYPVGIYGWRKRCLYFFVLLLLVTMIVNLAMTIWILKV 73
M +EQY ++ +P + Q+Y VGIYGWRKRCLYFFVLLL++ ++VNLAMTIWILKV
Sbjct: 1 MPQEQY--THHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKV 58
Query: 74 MNFTVDGMGNLRVTKKGIRLEGISEFLLPLYVKEIHSRKDSPLVLQSDRNVTVNARNHMG 133
MNFT+DGMGNLR+T+KG++LEG SEFL PLY KEI SR + L +S RNVTVN N
Sbjct: 59 MNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQT 118
Query: 134 QLTGQLTIGADAVEAQCKRFEVRASEDGRVLFSADEDEITIGAEKLKVTGTEGAVFGHSV 193
++ QL G AVEA K+FEV+ + G++LFSAD +E+ +GAE+L+V G EG VF S+
Sbjct: 119 KVLTQLITGPKAVEAYGKKFEVK-TVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSI 177
Query: 194 ETPHIRAEPSQDLRLESPTRSLIMEAPRGVQVSAAAGDFKATCRKELHLQSTEGEIFLNA 253
ETP++RA+P ++LRLESPTRSL+MEAP+GV+++A AG+ +ATCR EL L+S +GEI L+A
Sbjct: 178 ETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDA 237
Query: 254 ETIKLGNLPTGSFSSSSPSSSSSRQTVYELCVCPNGKLYLSPAGVGSTCQSSSNICL 310
I+L LP GS+ + + +RQ V+E+CVC NG+L+LS AG GSTCQ ++++CL
Sbjct: 238 AKIRLPRLPHGSY-----TPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL 289
>gi|21314619 delta-sarcoglycan isoform 1 [Homo sapiens]
Length = 290
Score = 339 bits (870), Expect = 2e-93
Identities = 169/297 (56%), Positives = 227/297 (76%), Gaps = 8/297 (2%)
Query: 14 MTREQYILATQQNNLPRTENAQLYPVGIYGWRKRCLYFFVLLLLVTMIVNLAMTIWILKV 73
M +EQY ++ +P + Q+Y VGIYGWRKRCLYFFVLLL++ ++VNLAMTIWILKV
Sbjct: 2 MPQEQY--THHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKV 59
Query: 74 MNFTVDGMGNLRVTKKGIRLEGISEFLLPLYVKEIHSRKDSPLVLQSDRNVTVNARNHMG 133
MNFT+DGMGNLR+T+KG++LEG SEFL PLY KEI SR + L +S RNVTVN N
Sbjct: 60 MNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQT 119
Query: 134 QLTGQLTIGADAVEAQCKRFEVRASEDGRVLFSADEDEITIGAEKLKVTGTEGAVFGHSV 193
++ QL G AVEA K+FEV+ + G++LFSAD +E+ +GAE+L+V G EG VF S+
Sbjct: 120 KVLTQLITGPKAVEAYGKKFEVK-TVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSI 178
Query: 194 ETPHIRAEPSQDLRLESPTRSLIMEAPRGVQVSAAAGDFKATCRKELHLQSTEGEIFLNA 253
ETP++RA+P ++LRLESPTRSL+MEAP+GV+++A AG+ +ATCR EL L+S +GEI L+A
Sbjct: 179 ETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDA 238
Query: 254 ETIKLGNLPTGSFSSSSPSSSSSRQTVYELCVCPNGKLYLSPAGVGSTCQSSSNICL 310
I+L LP GS+ + + +RQ V+E+CVC NG+L+LS AG GSTCQ ++++CL
Sbjct: 239 AKIRLPRLPHGSY-----TPTGTRQKVFEICVCANGRLFLSQAGAGSTCQINTSVCL 290
>gi|4557847 gamma sarcoglycan [Homo sapiens]
Length = 291
Score = 339 bits (869), Expect = 2e-93
Identities = 174/297 (58%), Positives = 223/297 (75%), Gaps = 6/297 (2%)
Query: 14 MTREQYILATQQNNLPRTENAQLYPVGIYGWRKRCLYFFVLLLLVTMIVNLAMTIWILKV 73
M REQY AT+ + R EN +Y +GIYGWRKRCLY FVLLLL+ ++VNLA+TIWILKV
Sbjct: 1 MVREQYTTATEGICIERPENQYVYKIGIYGWRKRCLYLFVLLLLIILVVNLALTIWILKV 60
Query: 74 MNFTVDGMGNLRVTKKGIRLEGISEFLLPLYVKEIHSRKDSPLVLQSDRNVTVNARNHMG 133
M F+ GMG+L VTK G+RLEG SEFL PLY KEIHSR DS L+LQS +NVTVNARN G
Sbjct: 61 MWFSPAGMGHLCVTKDGLRLEGESEFLFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSEG 120
Query: 134 QLTGQLTIGADAVEAQCKRFEVRASEDGRVLFSADEDEITIGAEKLKVTGTEGAVFGHSV 193
++TG+L +G VE Q ++F++ S DG+ LF+ DE E+ +G +KL+VTG EGA+F HSV
Sbjct: 121 EVTGRLKVGPKMVEVQNQQFQIN-SNDGKPLFTVDEKEVVVGTDKLRVTGPEGALFEHSV 179
Query: 194 ETPHIRAEPSQDLRLESPTRSLIMEAPRGVQVSAAAGDFKATCRKELHLQSTEGEIFLNA 253
ETP +RA+P QDLRLESPTRSL M+APRGV + A AG +A + ++ S++G + L+A
Sbjct: 180 ETPLVRADPFQDLRLESPTRSLSMDAPRGVHIQAHAGKIEALSQMDILFHSSDGMLVLDA 239
Query: 254 ETIKLGNLPTGSFSSSSPSSSSSRQTVYELCVCPNGKLYLSPAGVGSTCQSSSNICL 310
ET+ L L G++ PS SS Q++YE+CVCP+GKLYLS AGV +TCQ S+ICL
Sbjct: 240 ETVCLPKLVQGTW---GPSGSS--QSLYEICVCPDGKLYLSVAGVSTTCQEHSHICL 291
>gi|27477101 delta-sarcoglycan isoform 2 [Homo sapiens]
Length = 256
Score = 282 bits (721), Expect = 3e-76
Identities = 139/236 (58%), Positives = 184/236 (77%), Gaps = 3/236 (1%)
Query: 14 MTREQYILATQQNNLPRTENAQLYPVGIYGWRKRCLYFFVLLLLVTMIVNLAMTIWILKV 73
M +EQY ++ +P + Q+Y VGIYGWRKRCLYFFVLLL++ ++VNLAMTIWILKV
Sbjct: 2 MPQEQY--THHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKV 59
Query: 74 MNFTVDGMGNLRVTKKGIRLEGISEFLLPLYVKEIHSRKDSPLVLQSDRNVTVNARNHMG 133
MNFT+DGMGNLR+T+KG++LEG SEFL PLY KEI SR + L +S RNVTVN N
Sbjct: 60 MNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQT 119
Query: 134 QLTGQLTIGADAVEAQCKRFEVRASEDGRVLFSADEDEITIGAEKLKVTGTEGAVFGHSV 193
++ QL G AVEA K+FEV+ + G++LFSAD +E+ +GAE+L+V G EG VF S+
Sbjct: 120 KVLTQLITGPKAVEAYGKKFEVK-TVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSI 178
Query: 194 ETPHIRAEPSQDLRLESPTRSLIMEAPRGVQVSAAAGDFKATCRKELHLQSTEGEI 249
ETP++RA+P ++LRLESPTRSL+MEAP+GV+++A AG+ +ATCR EL L+S +GE+
Sbjct: 179 ETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEV 234
>gi|4506913 sarcoglycan, beta [Homo sapiens]
Length = 318
Score = 54.3 bits (129), Expect = 1e-07
Identities = 63/284 (22%), Positives = 117/284 (41%), Gaps = 29/284 (10%)
Query: 35 QLYPVGIYGWRKRCLYFFVLLLLVTMIVNLAMTIWILKVMNFTVDGMGNLRVTKKGI-RL 93
+L+ G+ G + ++LL + ++NL +T+ I V+ +G ++ + G+ R
Sbjct: 51 RLHKTGLRGRKGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRF 110
Query: 94 EGISEF--LLPLYVKEIHSRKDSPLVLQSDRNVTVNARNHMGQLTGQLTIGADAVEAQCK 151
+ +S+ + PLY + R++ LV+ + N + + +L+ + + + +
Sbjct: 111 KQVSDMGVIHPLYKSTVGGRRNENLVITGN-NQPIVFQQGTTKLSVENNKTSITSDIGMQ 169
Query: 152 RFEVRASEDGRVLFSAD----EDEITIGAEKLKVTGTEGAVFGHSVETPHIRAEPSQDLR 207
F+ R +LFS D E + G + L V T I + + DL
Sbjct: 170 FFDPRTQN---ILFSTDYETHEFHLPSGVKSLNV---------QKASTERITSNATSDLN 217
Query: 208 LESPTRSLIMEAPRGVQVSAAAGDFKATCRKELHLQSTEGEIFLNAET-IKLGNLPTGSF 266
++ R+++ GV + +F EL E I LN + LP+
Sbjct: 218 IKVDGRAIV-RGNEGVFIMGKTIEFHMGGNMEL---KAENSIILNGSVMVSTTRLPS--- 270
Query: 267 SSSSPSSSSSRQTVYELCVCPNGKLY-LSPAGVGSTCQSSSNIC 309
SSS S Y+LC+C +G L+ + CQ S N C
Sbjct: 271 SSSGDQLGSGDWVRYKLCMCADGTLFKVQVTSQNMGCQISDNPC 314
>gi|57242761 receptor (TNFRSF)-interacting serine-threonine kinase 1
[Homo sapiens]
Length = 671
Score = 32.0 bits (71), Expect = 0.72
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 254 ETIKLGNLPTGSFSSSSPSSSSSRQTVYELCVCPNGKL-YLSPAGVGSTCQSSSN 307
ET LGN PT FSS P+ S + T+Y G Y+ G S+ S+N
Sbjct: 507 ETNYLGNTPTMPFSSLPPTDESIKYTIYNSTGIQIGAYNYMEIGGTSSSLLDSTN 561
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 29.3 bits (64), Expect = 4.7
Identities = 24/142 (16%), Positives = 61/142 (42%), Gaps = 6/142 (4%)
Query: 121 DRNVTVNARNHMGQLTGQLTIGADAVEAQCKRFEVRASEDGRVLFSADEDEI----TIGA 176
+R A +H+G++ +L + D + E + + ++ +AD +++ +
Sbjct: 374 ERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEE 433
Query: 177 EKLKVTGTEGAVFGHSVETPHIRAEPS-QDLRLESPTRSLIMEAPRGVQVSAAAGDFK-A 234
EK KV + V S+ + + + R++ +SL+ E + ++ D + A
Sbjct: 434 EKRKVEDLQFRVEEESITKGDLETQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVA 493
Query: 235 TCRKELHLQSTEGEIFLNAETI 256
T ++ + E ++ L + +
Sbjct: 494 TVSEKSRIMELEKDLALRVQEV 515
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 28.5 bits (62), Expect = 8.0
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 251 LNAETIKLGNLPTGSFSSSSPSSSSSRQTVYELC-VCPNGKLYLSPAGVGSTCQSS 305
+NA T G+ + S SSSS SSSSS + C P +Y +P+ V +T Q++
Sbjct: 134 INAST---GSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVENTPQNN 186
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 28.5 bits (62), Expect = 8.0
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 251 LNAETIKLGNLPTGSFSSSSPSSSSSRQTVYELC-VCPNGKLYLSPAGVGSTCQSS 305
+NA T G+ + S SSSS SSSSS + C P +Y +P+ V +T Q++
Sbjct: 134 INAST---GSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVENTPQNN 186
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 28.5 bits (62), Expect = 8.0
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 251 LNAETIKLGNLPTGSFSSSSPSSSSSRQTVYELC-VCPNGKLYLSPAGVGSTCQSS 305
+NA T G+ + S SSSS SSSSS + C P +Y +P+ V +T Q++
Sbjct: 134 INAST---GSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVENTPQNN 186
>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
Length = 2382
Score = 28.5 bits (62), Expect = 8.0
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 148 AQCKRFEVRASEDGRVLFSADEDEITIGAEKLKVTGTEGAVFGHSVETPHIRAEPSQDLR 207
+Q K V A+ G +F ++++ A+ + G + SV +E S L
Sbjct: 1838 SQVKEGPVLATSSGAGVFKMGRFQVSVAADGAQKEGKNKSEDAKSVHFESSTSESSV-LS 1896
Query: 208 LESPTRSLIMEAPRGVQVSAAAGDFKATCRK 238
SP +L+ P G+ + + D + K
Sbjct: 1897 SSSPESTLVKPEPNGITIPGISSDVPESAHK 1927
>gi|112363080 microtubule associated serine/threonine kinase 2 [Homo
sapiens]
Length = 1798
Score = 28.5 bits (62), Expect = 8.0
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 49 LYFFVLLLLVTMIVNLAMTIWILKVMNFTVDGMGNLRVTKKGIRLEGISEFLLPLYVKEI 108
LYF +L + + N + LK N + MG++++T G+ G+ LY E
Sbjct: 614 LYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLY--EG 671
Query: 109 HSRKDS 114
H KD+
Sbjct: 672 HIEKDA 677
>gi|145275198 ADAMTS-like 3 precursor [Homo sapiens]
Length = 1691
Score = 28.5 bits (62), Expect = 8.0
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 78 VDGMGNLRVTKKGIRLEGISEFLLPLYV-KEIHSRK----DSPLVLQSDRNVTVNARNHM 132
+DG G +++ + +GI E + ++ ++ S ++P++L +RN+T NH+
Sbjct: 1242 LDGTGKIQIQNPTRKEQGIYECSVANHLGSDVESSSVLYAEAPVILSVERNITKPEHNHL 1301
Query: 133 GQLTGQLTIGA 143
+ G + A
Sbjct: 1302 SVVVGGIVEAA 1312
>gi|219555700 leucine rich repeat containing 27 isoform a [Homo
sapiens]
Length = 530
Score = 28.5 bits (62), Expect = 8.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 117 VLQSDRNVTVNARNHMGQLTGQLTIGADAVEAQCKRFEVRASEDGRV 163
VL+ +T+N LTG L++G A + Q F + E G V
Sbjct: 480 VLKLKLGLTLNKDRRRAALTGNLSLGLPAAQPQNTFFNTKYGESGNV 526
>gi|55741567 leucine rich repeat containing 27 isoform a [Homo
sapiens]
Length = 530
Score = 28.5 bits (62), Expect = 8.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 117 VLQSDRNVTVNARNHMGQLTGQLTIGADAVEAQCKRFEVRASEDGRV 163
VL+ +T+N LTG L++G A + Q F + E G V
Sbjct: 480 VLKLKLGLTLNKDRRRAALTGNLSLGLPAAQPQNTFFNTKYGESGNV 526
>gi|154426306 kinesin family member 24 [Homo sapiens]
Length = 1368
Score = 28.5 bits (62), Expect = 8.0
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 17/109 (15%)
Query: 202 PSQDLRLESPTRSLIMEAPRGVQVS--AAAGDFKATCRKELHLQSTEGEIFLNAETIKLG 259
PS+ L + T SL+ E+ G VS +GD +A L + S ++L++
Sbjct: 1067 PSEQLVQDGATHSLVAESTGGPVVSHTVPSGDQEAA----LPVSSATRHLWLSSS--PPD 1120
Query: 260 NLPTGSFSSSSPSSSSSRQTVYELCVCPNGKLYLSPAGVGSTCQSSSNI 308
N P G + SPS P KL A +G CQS +
Sbjct: 1121 NKPGGDLPALSPSPIRQH---------PADKLPSREADLGEACQSRETV 1160
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 28.5 bits (62), Expect = 8.0
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 49 LYFFVLLLLVTMIVNLAMTIWILKVMNFTVDGMGNLRVTKKGIRLEGISEFLLPLYVKEI 108
+YF +L + + N + LK N V MG++++T G+ G+ LY E
Sbjct: 483 MYFAETVLALEYLHNYGIVHRDLKPDNLLVTSMGHIKLTDFGLSKVGLMSMTTNLY--EG 540
Query: 109 HSRKDS 114
H KD+
Sbjct: 541 HIEKDA 546
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,103,269
Number of Sequences: 37866
Number of extensions: 475829
Number of successful extensions: 1520
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1501
Number of HSP's gapped (non-prelim): 31
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.