Search of human proteins with 93102387

Search of human proteins with 93102387

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|93102387 hypothetical protein LOC84326 isoform a [Homo
sapiens]
         (204 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93102387 hypothetical protein LOC84326 isoform a [Homo sapiens]    420   e-118
gi|93102391 hypothetical protein LOC84326 isoform b [Homo sapiens]    289   1e-78
gi|93102401 hypothetical protein LOC84326 isoform g [Homo sapiens]    250   5e-67
gi|93102395 hypothetical protein LOC84326 isoform d [Homo sapiens]    134   5e-32
gi|93102393 hypothetical protein LOC84326 isoform c [Homo sapiens]    134   5e-32
gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo...    27   9.2  
gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo...    27   9.2  

>gi|93102387 hypothetical protein LOC84326 isoform a [Homo sapiens]
          Length = 204

 Score =  420 bits (1079), Expect = e-118
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
           MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD
Sbjct: 1   MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60

Query: 61  QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE 120
           QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE
Sbjct: 61  QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE 120

Query: 121 GLFRAAGHLLKPRALLITYGPYAINGKISPQSNVDFDLMLRCRNPEWGLRDTALLEDLGK 180
           GLFRAAGHLLKPRALLITYGPYAINGKISPQSNVDFDLMLRCRNPEWGLRDTALLEDLGK
Sbjct: 121 GLFRAAGHLLKPRALLITYGPYAINGKISPQSNVDFDLMLRCRNPEWGLRDTALLEDLGK 180

Query: 181 ASGLLLERMVDMPANNKCLIFRKN 204
           ASGLLLERMVDMPANNKCLIFRKN
Sbjct: 181 ASGLLLERMVDMPANNKCLIFRKN 204


>gi|93102391 hypothetical protein LOC84326 isoform b [Homo sapiens]
          Length = 205

 Score =  289 bits (740), Expect = 1e-78
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
           MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD
Sbjct: 1   MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60

Query: 61  QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE 120
           QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE
Sbjct: 61  QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE 120

Query: 121 GLFRAAGHLLKPRALLITYG 140
           GLFRAAGHLLKPRALLITYG
Sbjct: 121 GLFRAAGHLLKPRALLITYG 140


>gi|93102401 hypothetical protein LOC84326 isoform g [Homo sapiens]
          Length = 185

 Score =  250 bits (639), Expect = 5e-67
 Identities = 123/129 (95%), Positives = 124/129 (96%), Gaps = 1/129 (0%)

Query: 1   MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
           MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD
Sbjct: 1   MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60

Query: 61  QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCT- 119
           QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCT 
Sbjct: 61  QRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPLRCTE 120

Query: 120 EGLFRAAGH 128
           E    A+GH
Sbjct: 121 EPRMGASGH 129


>gi|93102395 hypothetical protein LOC84326 isoform d [Homo
          sapiens]
          Length = 127

 Score =  134 bits (337), Expect = 5e-32
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
          MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD
Sbjct: 1  MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60

Query: 61 QRCLD 65
          QRCLD
Sbjct: 61 QRCLD 65



 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 164 NPEWGLRDTALLEDLGKASGLLLERMVDMPANNKCLIFRKN 204
           NPEWGLRDTALLEDLGKASGLLLERMVDMPANNKCLIFRKN
Sbjct: 87  NPEWGLRDTALLEDLGKASGLLLERMVDMPANNKCLIFRKN 127


>gi|93102393 hypothetical protein LOC84326 isoform c [Homo
          sapiens]
          Length = 107

 Score =  134 bits (337), Expect = 5e-32
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60
          MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD
Sbjct: 1  MLVAAAAERNKDPILHVLRQYLDPAQRGVRVLEVASGSGQHAAHFARAFPLAEWQPSDVD 60

Query: 61 QRCLD 65
          QRCLD
Sbjct: 61 QRCLD 65



 Score = 90.9 bits (224), Expect = 7e-19
 Identities = 45/50 (90%), Positives = 46/50 (92%), Gaps = 2/50 (4%)

Query: 157 DLMLRC--RNPEWGLRDTALLEDLGKASGLLLERMVDMPANNKCLIFRKN 204
           D+  RC  RNPEWGLRDTALLEDLGKASGLLLERMVDMPANNKCLIFRKN
Sbjct: 58  DVDQRCLDRNPEWGLRDTALLEDLGKASGLLLERMVDMPANNKCLIFRKN 107


>gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo
           sapiens]
          Length = 1236

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 31/132 (23%), Positives = 46/132 (34%), Gaps = 10/132 (7%)

Query: 2   LVAAAAERNKDPILHVLRQYLDPAQRGV-----RVLEVASGSGQHAAHFARAFPLAEWQP 56
           L   A E     +   +R YL+    GV     RVLE    S Q            +   
Sbjct: 699 LAPCADEAAISKLYSTIRPYLESKAHGVQKKAYRVLEEVCASPQGPGAL-----FVQSHL 753

Query: 57  SDVDQRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPL 116
            D+ +  LDS+ +T+       +K  LH+      EH   I     +++LC     V   
Sbjct: 754 EDLKKTLLDSLRSTSSPAKRPRLKCLLHIVRKLSAEHKEFITALIPEVILCTKEVSVGAR 813

Query: 117 RCTEGLFRAAGH 128
           +    L    GH
Sbjct: 814 KNAFALLVEMGH 825


>gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo
           sapiens]
          Length = 1297

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 31/132 (23%), Positives = 46/132 (34%), Gaps = 10/132 (7%)

Query: 2   LVAAAAERNKDPILHVLRQYLDPAQRGV-----RVLEVASGSGQHAAHFARAFPLAEWQP 56
           L   A E     +   +R YL+    GV     RVLE    S Q            +   
Sbjct: 760 LAPCADEAAISKLYSTIRPYLESKAHGVQKKAYRVLEEVCASPQGPGAL-----FVQSHL 814

Query: 57  SDVDQRCLDSIAATTQAQGLTNVKAPLHLDVTWGWEHWGGILPQSLDLLLCINMAHVSPL 116
            D+ +  LDS+ +T+       +K  LH+      EH   I     +++LC     V   
Sbjct: 815 EDLKKTLLDSLRSTSSPAKRPRLKCLLHIVRKLSAEHKEFITALIPEVILCTKEVSVGAR 874

Query: 117 RCTEGLFRAAGH 128
           +    L    GH
Sbjct: 875 KNAFALLVEMGH 886


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,822,673
Number of Sequences: 37866
Number of extensions: 330578
Number of successful extensions: 585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 9
length of query: 204
length of database: 18,247,518
effective HSP length: 97
effective length of query: 107
effective length of database: 14,574,516
effective search space: 1559473212
effective search space used: 1559473212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.