Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C16orf13 Sequence: fasta or formatted (204aa) NCBI GI: 93102387
Description:

hypothetical protein LOC84326 isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {205aa} hypothetical protein LOC84326 isoform b
alt prot {107aa} hypothetical protein LOC84326 isoform c
alt prot {127aa} hypothetical protein LOC84326 isoform d
alt prot {185aa} hypothetical protein LOC84326 isoform g
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         23           4
 C cysteine            2.5          5           1
 D aspartate           5.9         12           1
 E glutamate           3.9          8           1
 F phenylalanine       2.5          5           1
 G glycine             6.9         14           2
 H histidine           3.4          7           1
 I isoleucine          3.9          8           1
 K lysine              3.4          7           1
 L leucine            15.2         31           3
 M methionine          2.5          5           1
 N asparagine          4.4          9           2
 P proline             5.9         12           1
 Q glutamine           4.4          9           1
 R arginine            6.9         14           1
 S serine              4.4          9           1
 T threonine           3.4          7           2
 V valine              5.4         11           1
 W tryptophan          2.5          5           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84326 isoform a 
C16orf13              0.668   hypothetical protein LOC84326 isoform b 
C16orf13              0.570   hypothetical protein LOC84326 isoform g 
C16orf13              0.276   hypothetical protein LOC84326 isoform d 
C16orf13              0.276   hypothetical protein LOC84326 isoform c 
RRP12                 0.005   ribosomal RNA processing 12 homolog isoform 2 [Homo...
RRP12                 0.005   ribosomal RNA processing 12 homolog isoform 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press