Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RRN3 Sequence: fasta or formatted (651aa) NCBI GI: 93102377
Description:

RRN3 RNA polymerase I transcription factor homolog

Referenced in:

RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         35           3
 C cysteine            2.2         14           1
 D aspartate           6.9         45           3
 E glutamate           6.0         39           2
 F phenylalanine       6.3         41           2
 G glycine             4.1         27           2
 H histidine           2.2         14           1
 I isoleucine          6.1         40           2
 K lysine              5.8         38           2
 L leucine            11.8         77           3
 M methionine          2.3         15           1
 N asparagine          4.5         29           2
 P proline             5.7         37           2
 Q glutamine           3.8         25           1
 R arginine            4.5         29           1
 S serine              6.9         45           3
 T threonine           5.1         33           1
 V valine              6.6         43           2
 W tryptophan          0.9          6           1
 Y tyrosine            2.9         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RRN3 RNA polymerase I transcription factor homolog [... 
DHX9                  0.009   DEAH (Asp-Glu-Ala-His) box polypeptide 9 
ANXA2                 0.008   annexin A2 isoform 2 
ANXA2                 0.008   annexin A2 isoform 2 
ANXA2                 0.008   annexin A2 isoform 1 
ANXA2                 0.008   annexin A2 isoform 2 
TAF3                  0.005   RNA polymerase II transcription factor TAFII140 [Ho...
BPTF                  0.005   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.005   bromodomain PHD finger transcription factor isoform ...
FNDC3A                0.005   fibronectin type III domain containing 3A isoform 1...
FNDC3A                0.005   fibronectin type III domain containing 3A isoform 2...
PROS1                 0.005   protein S, alpha preproprotein 
EEF1B2                0.005   eukaryotic translation elongation factor 1 beta 2 [H...
EEF1B2                0.005   eukaryotic translation elongation factor 1 beta 2 [Ho...
EEF1B2                0.005   eukaryotic translation elongation factor 1 beta 2 [H...
ZBTB33                0.004   kaiso 
HABP2                 0.004   hyaluronan binding protein 2 preproprotein 
ISYNA1                0.004   inositol-3-phosphate synthase 1 
SRF                   0.004   serum response factor (c-fos serum response element-b...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press