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Search of human proteins with 90017700
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|90017700 hypothetical protein LOC644809 [Homo sapiens]
(161 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|90017700 hypothetical protein LOC644809 [Homo sapiens] 348 1e-96
gi|239756124 PREDICTED: hypothetical protein [Homo sapiens] 49 2e-06
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 40 9e-04
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 40 9e-04
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 40 9e-04
gi|151301137 AT-hook transcription factor [Homo sapiens] 39 0.001
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ... 37 0.006
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 36 0.013
gi|19924099 synapsin I isoform Ia [Homo sapiens] 36 0.016
gi|19924097 synapsin I isoform Ib [Homo sapiens] 36 0.016
gi|169216732 PREDICTED: similar to hCG1645335 [Homo sapiens] 35 0.036
gi|163965366 nascent polypeptide-associated complex alpha subuni... 34 0.048
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 34 0.062
gi|239751736 PREDICTED: hypothetical protein [Homo sapiens] 34 0.062
gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo ... 34 0.062
gi|239753493 PREDICTED: hypothetical protein [Homo sapiens] 33 0.081
gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo ... 33 0.081
gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo ... 33 0.081
gi|169216507 PREDICTED: similar to hCG1645335 [Homo sapiens] 33 0.11
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 33 0.11
gi|239752994 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 33 0.14
gi|239751430 PREDICTED: hypothetical protein [Homo sapiens] 33 0.14
gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo ... 33 0.14
gi|239747548 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 33 0.14
gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo ... 33 0.14
gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo sa... 33 0.14
gi|169166960 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|169166769 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|169166416 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|145580586 kintoun isoform 2 [Homo sapiens] 32 0.18
>gi|90017700 hypothetical protein LOC644809 [Homo sapiens]
Length = 161
Score = 348 bits (892), Expect = 1e-96
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MPRAGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSG 60
MPRAGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSG
Sbjct: 1 MPRAGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSG 60
Query: 61 AAGEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVLLNSFSPP 120
AAGEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVLLNSFSPP
Sbjct: 61 AAGEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVLLNSFSPP 120
Query: 121 AWPQFPPALRLRALAWPQPRGPACGSTAQWPPRGDPTWRIS 161
AWPQFPPALRLRALAWPQPRGPACGSTAQWPPRGDPTWRIS
Sbjct: 121 AWPQFPPALRLRALAWPQPRGPACGSTAQWPPRGDPTWRIS 161
>gi|239756124 PREDICTED: hypothetical protein [Homo sapiens]
Length = 348
Score = 48.5 bits (114), Expect = 2e-06
Identities = 52/165 (31%), Positives = 65/165 (39%), Gaps = 21/165 (12%)
Query: 3 RAGRAPAEGGPAPGTRSS--RCLRPRPLAWRRLVPNFGAWAPRKGAAR-VGRPVLSPRTS 59
RA P P P RS+ R R RP ++ + P P++ R VG + S
Sbjct: 105 RASPGPPRRRP-PSLRSAVPRIPRLRPERYQLVAPRVLPRTPQRWTRRGVGGRLPQAARS 163
Query: 60 GAAGEPTCGAGSPGTLEEGV-ASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVLLNSFS 118
G GA SP + G SGR G + CRW + C R A L S S
Sbjct: 164 SPRGSKLSGAASPTAIFPGTRGSGRGGGCNCGGGSCSCCRWSMAGPFPCARRATCLASLS 223
Query: 119 PPAWPQFPPALRLRALAWPQPRGPACGSTA----QWP--PRGDPT 157
PP P+ P A P PR A +TA Q+P P PT
Sbjct: 224 PP--PKLPTA--------PGPRAAAAAATATSSIQYPRIPLSPPT 258
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 40.0 bits (92), Expect = 9e-04
Identities = 37/114 (32%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 1 MPRAGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAA-RVGRPVLSPRTS 59
+P AGR PAEG P RC P PL RL+ W GAA R+G +
Sbjct: 3 VPAAGRVPAEGAPTAAVAEVRCPGPAPL---RLL----EWRVAAGAAVRIGSVL------ 49
Query: 60 GAAGEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVL 113
A E A S G + VASG R + + R G+ +E G V+
Sbjct: 50 -AVFEAAASAQSSGASQSRVASGGCVRPARPERRLRSERAGVVRELCAQPGQVV 102
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 40.0 bits (92), Expect = 9e-04
Identities = 37/114 (32%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 1 MPRAGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAA-RVGRPVLSPRTS 59
+P AGR PAEG P RC P PL RL+ W GAA R+G +
Sbjct: 3 VPAAGRVPAEGAPTAAVAEVRCPGPAPL---RLL----EWRVAAGAAVRIGSVL------ 49
Query: 60 GAAGEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVL 113
A E A S G + VASG R + + R G+ +E G V+
Sbjct: 50 -AVFEAAASAQSSGASQSRVASGGCVRPARPERRLRSERAGVVRELCAQPGQVV 102
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 40.0 bits (92), Expect = 9e-04
Identities = 49/167 (29%), Positives = 58/167 (34%), Gaps = 41/167 (24%)
Query: 2 PRAGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSG- 60
P R P E GP G R RP PR+ A P LSP + G
Sbjct: 173 PARSRTPGEAGPPRGDPRPRAPRPGD-------------HPRRSPALRETPSLSPPSPGR 219
Query: 61 -----AAGEPTCGAGSP-----GTLEEGVASGRTRRRTQSAGEVAKCR-WGLGQEPLCPR 109
AAG+ T P T E + RTR RT S G V + WG G+ R
Sbjct: 220 RNGKRAAGKGTTPQPQPPPPPCATRREEDMALRTRDRTSSRGTVFRAADWGFGRSEQHLR 279
Query: 110 GAVLLNSFSPPAWPQFPPALRLRALAWPQPRGPACGSTAQWPPRGDP 156
G L+ S + P +LR T W PRG P
Sbjct: 280 GLTLIISCT---LSHKPASLRR-------------SGTQAWGPRGLP 310
>gi|151301137 AT-hook transcription factor [Homo sapiens]
Length = 1439
Score = 39.3 bits (90), Expect = 0.001
Identities = 40/131 (30%), Positives = 46/131 (35%), Gaps = 24/131 (18%)
Query: 45 GAARVGRPVLSPRTSGAAGEPTCG-------AGSPGTLEEGVASGRTRRRTQSAGEVAKC 97
G A G P L P + P CG A PG+ G TRR+ S +
Sbjct: 1253 GGAVTGDP-LGPPPADTLQCPLCGQVGSPPEADGPGSATSGAEKATTRRKASSTPSPKQR 1311
Query: 98 RWGLGQEPLCPRGAVLLNSFSP-PAWPQF-----------PPALRLRALAWPQPRGPACG 145
G P P G L + P PA P F PPA A A P PA
Sbjct: 1312 SKQAGSSPRPPPGLWYLATAPPAPAPPAFAYISSVPIMPYPPAAVYYAPAGPTSAQPA-- 1369
Query: 146 STAQWPPRGDP 156
A+WPP P
Sbjct: 1370 --AKWPPTASP 1378
>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
sapiens]
Length = 278
Score = 37.4 bits (85), Expect = 0.006
Identities = 51/183 (27%), Positives = 64/183 (34%), Gaps = 37/183 (20%)
Query: 1 MPRAGRAPAEG-GPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVL----- 54
+PR P G GP+P RS PR + P G W R+G R G P L
Sbjct: 75 LPRPREPPEPGAGPSP-KRSPPPRAPRASSLAAPEPQVGDWTSREG--RRGGPCLPGARR 131
Query: 55 ---SPRTSGAAGEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGA 111
S S ++G P + +P EG+A+ R AG R P A
Sbjct: 132 RLFSLSVSRSSGPPRARSCAPHPAREGMAT----TRGPEAGLRVSGRGARAGSSTAPTRA 187
Query: 112 VLLNSFSPPAWPQFPPALR---------------LRALAWPQPRGPACGSTAQWPPRGDP 156
+ PA P FPP LR RA AW G G ++ G
Sbjct: 188 Q-----ASPARPGFPPCLRSPPCPASSRAFRSCLSRAKAW-DTAGQTAGQPSEKWEEGRK 241
Query: 157 TWR 159
WR
Sbjct: 242 QWR 244
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 36.2 bits (82), Expect = 0.013
Identities = 45/161 (27%), Positives = 55/161 (34%), Gaps = 29/161 (18%)
Query: 5 GRAPAEGGPAPGTRSSRCLRPRPLAWRR----LVPNFGAWAPRKGAARVGRPVLSPRTSG 60
G AP G PAP T R P + R P AP+ G G +P T G
Sbjct: 1067 GPAPTIGEPAPETSLERAPAPSAVVSSRNGGETAPGPLGPAPKNGTLEPGTERRAPETGG 1126
Query: 61 A-----AGEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVLLN 115
A AG G+G + G A G +G AK W P P
Sbjct: 1127 APRAPGAGRLDLGSGGRAPVGTGTAPG----GGPGSGVDAKAGWVDNTRPQPP------- 1175
Query: 116 SFSPPAWPQFPPALRLRALAWPQPRGPACGSTAQWPPRGDP 156
PP P PP + R L PR + + P G+P
Sbjct: 1176 ---PPPLPP-PPEAQPRRLEPAPPR-----ARPEVAPEGEP 1207
Score = 26.6 bits (57), Expect = 9.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 51 RPVLSPRTSGAAGEPTCGAGSPGTLEE 77
RP +GAAG GAG+PG EE
Sbjct: 1279 RPPWEGADAGAAGGEAGGAGAPGPAEE 1305
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 35.8 bits (81), Expect = 0.016
Identities = 40/159 (25%), Positives = 52/159 (32%), Gaps = 13/159 (8%)
Query: 4 AGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSGAAG 63
+G P G P P S P+ P A P +G R RPV + A
Sbjct: 494 SGLGPPAGSPLPQRLPSPTSAPQQ-------PASQAAPPTQGQGRQSRPVAGGPGAPPAA 546
Query: 64 EPTCG------AGSPGTLEEGVASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVLLNSF 117
P AG P + SG + A + R G Q+P P G S
Sbjct: 547 RPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQ 606
Query: 118 SPPAWPQFPPALRLRALAWPQPRGPACGSTAQWPPRGDP 156
+ P PP + + P P G AQ P + P
Sbjct: 607 AGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVP 645
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 35.8 bits (81), Expect = 0.016
Identities = 40/159 (25%), Positives = 52/159 (32%), Gaps = 13/159 (8%)
Query: 4 AGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSGAAG 63
+G P G P P S P+ P A P +G R RPV + A
Sbjct: 494 SGLGPPAGSPLPQRLPSPTSAPQQ-------PASQAAPPTQGQGRQSRPVAGGPGAPPAA 546
Query: 64 EPTCG------AGSPGTLEEGVASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVLLNSF 117
P AG P + SG + A + R G Q+P P G S
Sbjct: 547 RPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQ 606
Query: 118 SPPAWPQFPPALRLRALAWPQPRGPACGSTAQWPPRGDP 156
+ P PP + + P P G AQ P + P
Sbjct: 607 AGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVP 645
>gi|169216732 PREDICTED: similar to hCG1645335 [Homo sapiens]
Length = 409
Score = 34.7 bits (78), Expect = 0.036
Identities = 37/140 (26%), Positives = 49/140 (35%), Gaps = 19/140 (13%)
Query: 25 PRPLAWRRLVPNFGAWAP-----RKGAARVGRPVLSPRTSGAAGEPTCGAGS---PGTLE 76
P L RL+ AWA ++G A PV S + A P G S PG +
Sbjct: 265 PGFLGLLRLIREMEAWAAFPARSQQGVAWAAAPVESEDPAAAQASPAQGNASEAGPGAED 324
Query: 77 EGVASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVLLNSFSPPAWPQFPPALRLRALAW 136
A+ T+ E A+ G+ P G L P P R+ + W
Sbjct: 325 AAEAASATK-------EAARGAPAAGEGESAPAGPEGLGQARPIEVPWGSSPARMSSAVW 377
Query: 137 PQPRGPACGS----TAQWPP 152
PRG + G WPP
Sbjct: 378 VFPRGLSWGPEGLIQGLWPP 397
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 34.3 bits (77), Expect = 0.048
Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 8/118 (6%)
Query: 40 WAPRKGAARVGRPVLSPRTSGAAGEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRW 99
WAP AA P P T G PT A +P + + G A+ +
Sbjct: 961 WAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPK 1020
Query: 100 GLGQEPLCPRGAVLLNSFSPPAWPQFPPALRLRALAWPQPRGPACGSTAQWP-PRGDP 156
G P+GA + +PP+ P+ PA A P P+G A P P+G P
Sbjct: 1021 GSPAATPFPKGASTPPAATPPS-PKGSPA------ATPLPKGAPTTPAATLPSPKGGP 1071
Score = 31.6 bits (70), Expect = 0.31
Identities = 44/167 (26%), Positives = 56/167 (33%), Gaps = 33/167 (19%)
Query: 2 PRAGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSGA 61
P+ P P P + S P P AP AA + P P T
Sbjct: 1029 PKGASTPPAATP-PSPKGSPAATPLPKG-----------APTTPAATLPSPKGGPATPSL 1076
Query: 62 AGEPTCGAGSPGTLEEGVASGRTRRRTQ-SAGEVAKCRWGLGQEPLCPRGAVLLNSFSPP 120
G PT A +P + + G A+ + A + GL P +GA P
Sbjct: 1077 KGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPP--HKGA--------P 1126
Query: 121 AWPQFPPALRLRALAWPQPRG----PAC------GSTAQWPPRGDPT 157
P P LA P P+G PA G A PP+G PT
Sbjct: 1127 TTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPT 1173
Score = 31.2 bits (69), Expect = 0.40
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 22/117 (18%)
Query: 41 APRKGAARVGRPVLSPRTSGAAGEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRWG 100
AP AA P P T G PT A +P +L+ G+A+ + A
Sbjct: 1240 APTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVT------ 1293
Query: 101 LGQEPLCPRGAVLLNSFSPPAWPQFPPALRLRALAWPQPRGPACGSTAQWPPRGDPT 157
P P+G + SPP PP A P P+ GS PP+G PT
Sbjct: 1294 ----PPSPKGG---PATSPPKGAPTPP-----AATPPSPK----GSPGTPPPKGAPT 1334
Score = 26.9 bits (58), Expect = 7.6
Identities = 41/156 (26%), Positives = 55/156 (35%), Gaps = 26/156 (16%)
Query: 2 PRAGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSGA 61
P+ G A AP T ++ P P P GA P AA P T
Sbjct: 1136 PKGGLATPPPKGAPTTPAAT--PPSPKGGLATPPPKGA--PTTPAATPPSPKGGLATPSP 1191
Query: 62 AGEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVLLNSFSPPA 121
G PT A +P + + G+A+ + + P P+G L + SP
Sbjct: 1192 KGAPTTPAATPPSPKGGLATPSPKGAPTTPAAT----------PPSPKGG--LATPSPKG 1239
Query: 122 WPQFPPALRLRALAWPQPRGPACGSTAQWPPRGDPT 157
P P A P P+ G A PP+G PT
Sbjct: 1240 APTTPAATP------PSPK----GGPATPPPKGAPT 1265
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 33.9 bits (76), Expect = 0.062
Identities = 43/152 (28%), Positives = 56/152 (36%), Gaps = 25/152 (16%)
Query: 7 APAEGGPAPGTRSSRCLRPRPLA-WRRLVPNFGAWAPRKGAARVGRPVLSPRTSGAAGEP 65
+P PAPG R SR RP + R P + APR R GR +P
Sbjct: 176 SPGARRPAPGARRSRPRLLRPASPPPRPAPRRRSTAPRHEGGRPGR-------GRTRRQP 228
Query: 66 -TCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVLLNSFSPPAWPQ 124
GAG EG G R Q A E A C V ++ + P+
Sbjct: 229 HLAGAGCARLELEGARMGERLHRRQGAPETA-----------CIHLQVSISKNASELNPK 277
Query: 125 FPPALRLRALAWPQPRGP--ACGSTAQWPPRG 154
FP + + + +GP A GS+ PP G
Sbjct: 278 FPQCHLINGPGFAEAKGPMVAAGSS---PPAG 306
>gi|239751736 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 33.9 bits (76), Expect = 0.062
Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 4 AGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSGAAG 63
AG P GGP G + RP A R + P K A +P R S ++
Sbjct: 98 AGPRPKRGGPWCGAK-----RPSQSAERSAA---SSTPPEKTCAPGMKPWCGERCSSSSR 149
Query: 64 EPTCGAGSPGTLEEGVA-SGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVLLNSFSPPAW 122
+P+ G G G GVA SGR + ++ + R G G+ L ++ SF P
Sbjct: 150 KPSAGGGRDG----GVAVSGRDQPAARTMLAARRQRLGPGRREL-----LMARSFPDPIL 200
Query: 123 PQFPPALRLRALAWPQPRG 141
+ P L R WP P G
Sbjct: 201 AR--PELHGR---WPGPAG 214
>gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo
sapiens]
Length = 261
Score = 33.9 bits (76), Expect = 0.062
Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 4 AGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSGAAG 63
AG P GGP G + RP A R + P K A +P R S ++
Sbjct: 98 AGPRPKRGGPWCGAK-----RPSQSAERSAA---SSTPPEKTCAPGMKPWCGERCSSSSR 149
Query: 64 EPTCGAGSPGTLEEGVA-SGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVLLNSFSPPAW 122
+P+ G G G GVA SGR + ++ + R G G+ L ++ SF P
Sbjct: 150 KPSAGGGRDG----GVAVSGRDQPAARTMLAARRQRLGPGRREL-----LMARSFPDPIL 200
Query: 123 PQFPPALRLRALAWPQPRG 141
+ P L R WP P G
Sbjct: 201 AR--PELHGR---WPGPAG 214
>gi|239753493 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 33.5 bits (75), Expect = 0.081
Identities = 52/163 (31%), Positives = 61/163 (37%), Gaps = 26/163 (15%)
Query: 2 PRAGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSGA 61
P A R P PAP RCLR RP P G A R G+ VG +G
Sbjct: 56 PAAAREPPPPAPAP-----RCLRLRP-----PFPEEGV-AARPGSCPVGWGARKLEGTGV 104
Query: 62 AGEP---TCGAGSPGTLEEGVASGRTR--RRTQSAGEVA--KCRWGLGQEPLCPRGAVLL 114
GE A P EE A GR R R G+ A + + L P PR
Sbjct: 105 LGEGEKLVTWANLPQGNEELPALGRDRGAGRMSPHGKRADGQAQGQLRLPPSTPRA---- 160
Query: 115 NSFSPPAWPQFPPALRLRALAWPQPR-GPACGSTAQWPPRGDP 156
P+ P + LR +W QP G A G A W P+ P
Sbjct: 161 -PDRGGCEPRAPRSQELR--SWAQPAGGRAPGCAAPWVPQCHP 200
>gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo
sapiens]
Length = 254
Score = 33.5 bits (75), Expect = 0.081
Identities = 52/163 (31%), Positives = 61/163 (37%), Gaps = 26/163 (15%)
Query: 2 PRAGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSGA 61
P A R P PAP RCLR RP P G A R G+ VG +G
Sbjct: 56 PAAAREPPPPAPAP-----RCLRLRP-----PFPEEGV-AARPGSCPVGWGARKLEGTGV 104
Query: 62 AGEP---TCGAGSPGTLEEGVASGRTR--RRTQSAGEVA--KCRWGLGQEPLCPRGAVLL 114
GE A P EE A GR R R G+ A + + L P PR
Sbjct: 105 LGEGEKLVTWANLPQGNEELPALGRDRGAGRMSPHGKRADGQAQGQLRLPPSTPRA---- 160
Query: 115 NSFSPPAWPQFPPALRLRALAWPQPR-GPACGSTAQWPPRGDP 156
P+ P + LR +W QP G A G A W P+ P
Sbjct: 161 -PDRGGCEPRAPRSQELR--SWAQPAGGRAPGCAAPWVPQCHP 200
>gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo
sapiens]
Length = 254
Score = 33.5 bits (75), Expect = 0.081
Identities = 52/163 (31%), Positives = 61/163 (37%), Gaps = 26/163 (15%)
Query: 2 PRAGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSGA 61
P A R P PAP RCLR RP P G A R G+ VG +G
Sbjct: 56 PAAAREPPPPAPAP-----RCLRLRP-----PFPEEGV-AARPGSCPVGWGARKLEGTGV 104
Query: 62 AGEP---TCGAGSPGTLEEGVASGRTR--RRTQSAGEVA--KCRWGLGQEPLCPRGAVLL 114
GE A P EE A GR R R G+ A + + L P PR
Sbjct: 105 LGEGEKLVTWANLPQGNEELPALGRDRGAGRMSPHGKRADGQAQGQLRLPPSTPRA---- 160
Query: 115 NSFSPPAWPQFPPALRLRALAWPQPR-GPACGSTAQWPPRGDP 156
P+ P + LR +W QP G A G A W P+ P
Sbjct: 161 -PDRGGCEPRAPRSQELR--SWAQPAGGRAPGCAAPWVPQCHP 200
>gi|169216507 PREDICTED: similar to hCG1645335 [Homo sapiens]
Length = 409
Score = 33.1 bits (74), Expect = 0.11
Identities = 36/138 (26%), Positives = 47/138 (34%), Gaps = 21/138 (15%)
Query: 25 PRPLAWRRLVPNFGAWAP-----RKGAARVGRPVLSPRTSGAAGEPTCGAGS---PGTLE 76
P L RL+ AWA ++G A PV S + A P G S PG +
Sbjct: 265 PGFLGLLRLIREMEAWAAFPARSQQGVAWAAAPVESEDPAAAQASPAQGNASEAGPGAED 324
Query: 77 EGVASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVLLNSFSPPAWPQFPPALRLRALAW 136
A+ T+ E A+ G+ P G L P P R+ + W
Sbjct: 325 AAEAASATK-------EAARGAPAAGEGESAPAGPEGLGQARPIEVPWGSSPARMSSAVW 377
Query: 137 PQPRGPACGSTAQWPPRG 154
PRG W P G
Sbjct: 378 VFPRG------LSWGPEG 389
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 33.1 bits (74), Expect = 0.11
Identities = 43/149 (28%), Positives = 52/149 (34%), Gaps = 27/149 (18%)
Query: 1 MPRAGRAPAEGGPAPGTRSSR-------CLRPRPLAWRRLV--PNFGAWAPRKGAARVGR 51
+PR P GPA R R LRPR W V PN R+G+ R G
Sbjct: 232 LPRPPPPPPPPGPALLPRRLRELRGKEVGLRPRTRGWTTCVVSPNL-----RRGSRRAGN 286
Query: 52 PVLSPRTSGAAGEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRWGLGQEPLCP-RG 110
+ G+A PG+ G+ + R T V WGL PL P RG
Sbjct: 287 HRVREIEFGSALLAALNTLGPGSFGAGLGAQGPRSSTPECPVVNGSEWGLA-APLSPERG 345
Query: 111 AVLLNSFSPPAWPQFPPALRLRALAWPQP 139
+ P P LR L P P
Sbjct: 346 S-----------PGRPAFLRSPGLCGPGP 363
Score = 27.7 bits (60), Expect = 4.5
Identities = 44/146 (30%), Positives = 55/146 (37%), Gaps = 29/146 (19%)
Query: 3 RAGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSGAA 62
R+G A G G +R + PR A GAA GR V + SG
Sbjct: 124 RSGPGSARLGLGSGWDPARAVAPRA-------------ARALGAALFGRAVHTAALSGPH 170
Query: 63 GEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAK---CRWGLGQEPLCPRGAVLLNSFSP 119
CGA + G AS R R+R ++ + + R G G P G L S P
Sbjct: 171 CRLRCGARA-FYAAAGGASSRRRQRGRNPALIVRGPGPRRG-GGLTSAPPGLPPLAS-PP 227
Query: 120 PAW--PQFPPALRLRALAWPQPRGPA 143
P W P+ PP P P GPA
Sbjct: 228 PFWELPRPPPP--------PPPPGPA 245
>gi|239752994 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 32.7 bits (73), Expect = 0.14
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 42 PRKGAARVGRPVLSPRTSGAA---GEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCR 98
PR+ +R G P LS RT ++ G+P G ++G +G R T + CR
Sbjct: 59 PREKCSR-GLPPLSWRTPNSSHQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNF---CR 114
Query: 99 WGLGQEPLCPRGAVLLNSFSPPAWPQFPPALRLRALAWPQPRGPA 143
+ + PL P + L PP PPA L + + GPA
Sbjct: 115 ALVDRRPLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPA 159
>gi|239751430 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 32.7 bits (73), Expect = 0.14
Identities = 35/113 (30%), Positives = 39/113 (34%), Gaps = 27/113 (23%)
Query: 2 PRAGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGR--PVLSPRTS 59
P+ GR P G G S PR W R WA AA GR P PR +
Sbjct: 117 PQPGRRPTCPGCCRGAASGA---PR---WVR------TWAAAAVAAGPGRSAPQREPRAA 164
Query: 60 GAA-------------GEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRW 99
AA G +C A PGT G A+ R S G A W
Sbjct: 165 WAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAGASSRGRGALGAW 217
>gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo
sapiens]
Length = 201
Score = 32.7 bits (73), Expect = 0.14
Identities = 44/149 (29%), Positives = 51/149 (34%), Gaps = 51/149 (34%)
Query: 4 AGRAPAEGGPAPGTRSSRCLRPRPL----AWRRLVPNFGAWAPRKGAARVGRPVLSPRTS 59
A RAP P P RS R P+PL +W R +P G RP+ S T
Sbjct: 75 AKRAPVPSAPLPAARSPR--GPQPLSPRSSWVRGMPGRGGHQ---------RPLFS--TL 121
Query: 60 GAAGEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRWGLGQEPLCPRGAVLLNSFSP 119
GA +P G G G G P A L +S P
Sbjct: 122 GAGFQPPLGRGGAGR---------------------------GGAP-----ASLASSARP 149
Query: 120 PAWPQFPPALRLR--ALAWPQPRGPACGS 146
A P P R R AL W P P+ GS
Sbjct: 150 CAAPALPYRERARPAALHWRTPASPSLGS 178
>gi|239747548 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 32.7 bits (73), Expect = 0.14
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 42 PRKGAARVGRPVLSPRTSGAA---GEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCR 98
PR+ +R G P LS RT ++ G+P G ++G +G R T + CR
Sbjct: 59 PREKCSR-GLPPLSWRTPNSSHQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNF---CR 114
Query: 99 WGLGQEPLCPRGAVLLNSFSPPAWPQFPPALRLRALAWPQPRGPA 143
+ + PL P + L PP PPA L + + GPA
Sbjct: 115 ALVDRRPLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPA 159
>gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo
sapiens]
Length = 303
Score = 32.7 bits (73), Expect = 0.14
Identities = 35/113 (30%), Positives = 39/113 (34%), Gaps = 27/113 (23%)
Query: 2 PRAGRAPAEGGPAPGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGR--PVLSPRTS 59
P+ GR P G G S PR W R WA AA GR P PR +
Sbjct: 117 PQPGRRPTCPGCCRGAASGA---PR---WVR------TWAAAAVAAGPGRSAPQREPRAA 164
Query: 60 GAA-------------GEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCRW 99
AA G +C A PGT G A+ R S G A W
Sbjct: 165 WAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAGASSRGRGALGAW 217
>gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo
sapiens]
Length = 313
Score = 32.7 bits (73), Expect = 0.14
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 42 PRKGAARVGRPVLSPRTSGAA---GEPTCGAGSPGTLEEGVASGRTRRRTQSAGEVAKCR 98
PR+ +R G P LS RT ++ G+P G ++G +G R T + CR
Sbjct: 59 PREKCSR-GLPPLSWRTPNSSHQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNF---CR 114
Query: 99 WGLGQEPLCPRGAVLLNSFSPPAWPQFPPALRLRALAWPQPRGPA 143
+ + PL P + L PP PPA L + + GPA
Sbjct: 115 ALVDRRPLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPA 159
>gi|169166960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 32.3 bits (72), Expect = 0.18
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 15/89 (16%)
Query: 18 RSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSGAAGE----PTCGAGSPG 73
R L P PL RR P GA R RP PR G+ PT SP
Sbjct: 113 RHRATLPPHPLRSRRSAPTLGA--------RPRRPTWPPRAQLKRGDQQPPPT---PSPA 161
Query: 74 TLEEGVASGRTRRRTQSAGEVAKCRWGLG 102
+ G RTRRRT + + G G
Sbjct: 162 SQPRGARRARTRRRTNEESSRLQSQEGDG 190
>gi|169166769 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 32.3 bits (72), Expect = 0.18
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 15/89 (16%)
Query: 18 RSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSGAAGE----PTCGAGSPG 73
R L P PL RR P GA R RP PR G+ PT SP
Sbjct: 113 RHRATLPPHPLRSRRSAPTLGA--------RPRRPTWPPRAQLKRGDQQPPPT---PSPA 161
Query: 74 TLEEGVASGRTRRRTQSAGEVAKCRWGLG 102
+ G RTRRRT + + G G
Sbjct: 162 SQPRGARRARTRRRTNEESSRLQSQEGDG 190
>gi|169166416 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 32.3 bits (72), Expect = 0.18
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 15/89 (16%)
Query: 18 RSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSGAAGE----PTCGAGSPG 73
R L P PL RR P GA R RP PR G+ PT SP
Sbjct: 113 RHRATLPPHPLRSRRSAPTLGA--------RPRRPTWPPRAQLKRGDQQPPPT---PSPA 161
Query: 74 TLEEGVASGRTRRRTQSAGEVAKCRWGLG 102
+ G RTRRRT + + G G
Sbjct: 162 SQPRGARRARTRRRTNEESSRLQSQEGDG 190
>gi|145580586 kintoun isoform 2 [Homo sapiens]
Length = 789
Score = 32.3 bits (72), Expect = 0.18
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 2 PRAGRAPAEGGP-APGTRSSRCLRPRPLAWRRLVPNFGAWAPRKGAARVGRPVLSPRTSG 60
P + P+ GG +PG S CL R LAW G+ A R+ A + G
Sbjct: 448 PGSVEEPSPGGENSPGGGGSPCLSSRSLAW-------GSSAGRESARGDSSVETREESEG 500
Query: 61 AAGE-PTCGAGSPGT 74
G+ C G PGT
Sbjct: 501 TGGQRSACAMGGPGT 515
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,936,896
Number of Sequences: 37866
Number of extensions: 512800
Number of successful extensions: 2517
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 216
Number of HSP's that attempted gapping in prelim test: 2366
Number of HSP's gapped (non-prelim): 372
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.