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Search of human proteins with 89886490
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89886490 hypothetical protein LOC750 [Homo sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89886490 hypothetical protein LOC750 [Homo sapiens] 251 7e-68
gi|58082087 late cornified envelope-like proline-rich 1 [Homo sa... 40 4e-04
gi|30410047 late cornified envelope 2C [Homo sapiens] 37 0.004
gi|89191868 von Willebrand factor preproprotein [Homo sapiens] 36 0.007
gi|30410043 late cornified envelope 2D [Homo sapiens] 35 0.010
gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens] 35 0.013
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 35 0.017
gi|30410035 late cornified envelope 5A [Homo sapiens] 35 0.017
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 34 0.028
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 34 0.028
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 34 0.028
gi|30410045 late cornified envelope 2A [Homo sapiens] 34 0.028
gi|113416171 PREDICTED: hypothetical protein [Homo sapiens] 33 0.063
gi|197313748 SET domain containing 2 [Homo sapiens] 33 0.063
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 33 0.063
gi|74272287 matrix metalloproteinase 9 preproprotein [Homo sapiens] 32 0.082
gi|169166294 PREDICTED: hypothetical protein [Homo sapiens] 32 0.082
gi|169211819 PREDICTED: keratin associated protein [Homo sapiens] 32 0.11
gi|239745811 PREDICTED: hypothetical protein XP_002343557 [Homo ... 32 0.11
gi|145046269 rotatin [Homo sapiens] 32 0.11
gi|7657685 late cornified envelope 2B [Homo sapiens] 32 0.14
gi|239757282 PREDICTED: similar to Fc fragment of IgG binding pr... 31 0.18
gi|239751787 PREDICTED: hypothetical protein XP_002348012 [Homo ... 31 0.18
gi|239741939 PREDICTED: hypothetical protein XP_002342358 [Homo ... 31 0.18
gi|30387654 late cornified envelope 1A [Homo sapiens] 31 0.18
gi|154146262 Fc fragment of IgG binding protein [Homo sapiens] 31 0.18
gi|158508572 nuclear receptor subfamily 3, group C, member 2 [Ho... 31 0.24
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 31 0.24
gi|238859649 keratin associated protein 10-8 [Homo sapiens] 30 0.31
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 30 0.31
>gi|89886490 hypothetical protein LOC750 [Homo sapiens]
Length = 117
Score = 251 bits (642), Expect = 7e-68
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MKLSSAAGQESPGHPHPSPPAWTLKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPV 60
MKLSSAAGQESPGHPHPSPPAWTLKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPV
Sbjct: 1 MKLSSAAGQESPGHPHPSPPAWTLKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPV 60
Query: 61 ACPVGCPVGSMATAPQGLSPQEWEADRETGSSSHAGTTQCSIHSPSSSSRHLSRTQT 117
ACPVGCPVGSMATAPQGLSPQEWEADRETGSSSHAGTTQCSIHSPSSSSRHLSRTQT
Sbjct: 61 ACPVGCPVGSMATAPQGLSPQEWEADRETGSSSHAGTTQCSIHSPSSSSRHLSRTQT 117
>gi|58082087 late cornified envelope-like proline-rich 1 [Homo
sapiens]
Length = 98
Score = 40.0 bits (92), Expect = 4e-04
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 2 KLSSAAGQESPGHPHPSPPAWTLKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPVA 61
KL ++ P P+PP L PS+S + P C CP CP SCP A
Sbjct: 38 KLLQRCFEKCPWEKCPAPPK-CLPCPSQSPSS-------CPPQPCTKPCPPKCPSSCPHA 89
Query: 62 CPVGCP 67
CP CP
Sbjct: 90 CPPPCP 95
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGCPVGSMATAPQGLSPQE 82
CP P CP P C CP CP P P E
Sbjct: 61 CPSQSPSSCP---PQPCTKPCPPKCPSSCPHACPPPCPPPE 98
>gi|30410047 late cornified envelope 2C [Homo sapiens]
Length = 110
Score = 36.6 bits (83), Expect = 0.004
Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGC-PVGSMATAPQGLSPQEWEADRETGSSSHAGTTQC 100
CP C CP CP CP CP C P S P S +G +G C
Sbjct: 16 CPPKCTPKCPPKCPPKCPPQCPAPCFPAVSSCCGPSSGSC----CGPSSGGCCSSGAGGC 71
Query: 101 SIHSPSSSSRHLSRTQT 117
S+ H R Q+
Sbjct: 72 SLSHHRPRLFHRRRHQS 88
>gi|89191868 von Willebrand factor preproprotein [Homo sapiens]
Length = 2813
Score = 35.8 bits (81), Expect = 0.007
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 39 ARACPVACPVGCPIACPVSCPVACPVGCPVGSM 71
A AC V C P+ACPV C C CP G +
Sbjct: 1150 APACQVTCQHPEPLACPVQCVEGCHAHCPPGKI 1182
Score = 31.6 bits (70), Expect = 0.14
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 45 ACPVGCPIACPVSCPVACPVGCPVGSMATAPQG 77
+C C + C P+ACPV C G A P G
Sbjct: 1148 SCAPACQVTCQHPEPLACPVQCVEGCHAHCPPG 1180
Score = 31.2 bits (69), Expect = 0.18
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 41 ACPVACPVGCPIACPVSCPVACPVGC 66
+C AC V C P++CPV C GC
Sbjct: 1148 SCAPACQVTCQHPEPLACPVQCVEGC 1173
>gi|30410043 late cornified envelope 2D [Homo sapiens]
Length = 110
Score = 35.4 bits (80), Expect = 0.010
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGC-PVGSMATAP 75
CP C CP CP CP CP C P S P
Sbjct: 16 CPPKCTPKCPPKCPPKCPPQCPAPCSPAVSSCCGP 50
Score = 33.5 bits (75), Expect = 0.037
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 43 PVACPVGCPIACPVSCPVACPVGCP 67
P CP C CP CP CP CP
Sbjct: 13 PPKCPPKCTPKCPPKCPPKCPPQCP 37
Score = 26.2 bits (56), Expect = 5.9
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 9/57 (15%)
Query: 51 PIACPVSCPVACPVGCPVGSMATAPQGLSPQEWEADRETGSSSHAGTTQCSIHSPSS 107
P CP C CP CP P SP SS G + S PSS
Sbjct: 13 PPKCPPKCTPKCPPKCPPKCPPQCPAPCSP---------AVSSCCGPSSGSCCGPSS 60
>gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens]
Length = 1503
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 36 MCSARACP-VACPVGCPIACPVSCPVACPVGCPVGSMATAPQG---LSPQEWEADRETGS 91
+C +ACP ++CP+ P SC CPV C + + QG S + W D T
Sbjct: 1052 LCIHQACPELSCPLSERHTPPGSC---CPV-CRAPTQSCVHQGREVASGERWTVDTCTSC 1107
Query: 92 SSHAGTTQC 100
S AGT +C
Sbjct: 1108 SCMAGTVRC 1116
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 34.7 bits (78), Expect = 0.017
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 4 SSAAGQESPGH-PHPSPPAWTLKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPVAC 62
S A+ PG+ P P P T+ P+ S+ S + P + P S P +
Sbjct: 1923 SPASTTSGPGNTPSPVPTTSTISAPTTSITSAPTTSTTSAPTSSTTSAPTTSTTSAPTSS 1982
Query: 63 PVGCPVGSMATAP 75
P S +AP
Sbjct: 1983 TTSSPQTSTTSAP 1995
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 18 SPPAWTLKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPVACPVGCPVGSMATAPQG 77
+P A T P+ + S + P P P +S P P S +AP
Sbjct: 1906 APTARTTSAPTTRTTSASPASTTSGPGNTPSPVPTTSTISAPTTSITSAPTTSTTSAP-- 1963
Query: 78 LSPQEWEADRETGSSSHAGTTQCSIHSPSSSSRHLSRTQT 117
T S++ A TT + +P+SS+ +T T
Sbjct: 1964 -----------TSSTTSAPTTS-TTSAPTSSTTSSPQTST 1991
>gi|30410035 late cornified envelope 5A [Homo sapiens]
Length = 118
Score = 34.7 bits (78), Expect = 0.017
Identities = 12/26 (46%), Positives = 12/26 (46%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGCP 67
CP C CP CP CP C CP
Sbjct: 20 CPPKCTPKCPPKCPPKCPPQCSAPCP 45
Score = 33.5 bits (75), Expect = 0.037
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 43 PVACPVGCPIACPVSCPVACPVGCPVGSMATAPQGLSPQEWEADRETGS--SSHAGTTQC 100
P C CP C CP CP CP A P +S +G SS G
Sbjct: 13 PPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSC---CGSSSGGCCSSEGGGCCL 69
Query: 101 SIHSPSSSSR 110
S H P S R
Sbjct: 70 SHHRPRQSLR 79
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGC------PVGSMATAPQG 77
C CP C CP CP CP C PV S + G
Sbjct: 16 CTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSG 57
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 33.9 bits (76), Expect = 0.028
Identities = 20/69 (28%), Positives = 27/69 (39%)
Query: 7 AGQESPGHPHPSPPAWTLKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPVACPVGC 66
A ++ P P P+P + P + A + A PVA PV + P P P
Sbjct: 121 APEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPA 180
Query: 67 PVGSMATAP 75
P A AP
Sbjct: 181 PAPVAAPAP 189
Score = 32.3 bits (72), Expect = 0.082
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 15 PHPSPPAWTLKKPSESVAQRAMCSARACPVAC------PVGCPIACPVSCPVACPVGCPV 68
P +PP + P+ + A + + A PVA P P P PVA P P
Sbjct: 133 PASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPA 192
Query: 69 GSMATAP 75
+ A AP
Sbjct: 193 PAPAPAP 199
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 24 LKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPVACPVGCPVGSMATAP 75
L++ E + + + + P PV P P PVA PV PV AP
Sbjct: 118 LEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP 169
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 33.9 bits (76), Expect = 0.028
Identities = 20/69 (28%), Positives = 27/69 (39%)
Query: 7 AGQESPGHPHPSPPAWTLKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPVACPVGC 66
A ++ P P P+P + P + A + A PVA PV + P P P
Sbjct: 121 APEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPA 180
Query: 67 PVGSMATAP 75
P A AP
Sbjct: 181 PAPVAAPAP 189
Score = 32.3 bits (72), Expect = 0.082
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 15 PHPSPPAWTLKKPSESVAQRAMCSARACPVAC------PVGCPIACPVSCPVACPVGCPV 68
P +PP + P+ + A + + A PVA P P P PVA P P
Sbjct: 133 PASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPA 192
Query: 69 GSMATAP 75
+ A AP
Sbjct: 193 PAPAPAP 199
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 24 LKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPVACPVGCPVGSMATAP 75
L++ E + + + + P PV P P PVA PV PV AP
Sbjct: 118 LEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP 169
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 33.9 bits (76), Expect = 0.028
Identities = 20/69 (28%), Positives = 27/69 (39%)
Query: 7 AGQESPGHPHPSPPAWTLKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPVACPVGC 66
A ++ P P P+P + P + A + A PVA PV + P P P
Sbjct: 132 APEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPA 191
Query: 67 PVGSMATAP 75
P A AP
Sbjct: 192 PAPVAAPAP 200
Score = 32.3 bits (72), Expect = 0.082
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 15 PHPSPPAWTLKKPSESVAQRAMCSARACPVAC------PVGCPIACPVSCPVACPVGCPV 68
P +PP + P+ + A + + A PVA P P P PVA P P
Sbjct: 144 PASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPA 203
Query: 69 GSMATAP 75
+ A AP
Sbjct: 204 PAPAPAP 210
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 24 LKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPVACPVGCPVGSMATAP 75
L++ E + + + + P PV P P PVA PV PV AP
Sbjct: 129 LEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAP 180
>gi|30410045 late cornified envelope 2A [Homo sapiens]
Length = 106
Score = 33.9 bits (76), Expect = 0.028
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 43 PVACPVGCPIACPVSCPVACPVGCP 67
P CP CP CP C CP CP
Sbjct: 13 PPKCPPKCPPKCPPKCRPQCPAPCP 37
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/71 (35%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGCPVGSMATAPQGLSPQEWEADRETGSSSHAGTTQC- 100
CP CP CP C CP CP PV S G S G S G C
Sbjct: 16 CPPKCPPKCPPKCRPQCPAPCPP--PVSSCC----GPSSGGCCGSSSGGCCSSGGGGCCL 69
Query: 101 SIHSPSSSSRH 111
S H P RH
Sbjct: 70 SHHRPRLFHRH 80
>gi|113416171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 32.7 bits (73), Expect = 0.063
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 18 SPPAWTLKKPSESVAQRAMCSARACPVACP-VGCPIACPVSCPVACPVGCPVGSMATAP- 75
SP K S S A A A A P +G A S P ACP GC A AP
Sbjct: 43 SPRCCRFCKGSVSTATVTSSGASAPGSADPTLGSTAARRASAPWACPAGC---CRANAPA 99
Query: 76 QGLSPQEWEADRETGSSSHAGTTQCSIHSPSSSSRH 111
+P+ E R++ ++ + T+ + SP RH
Sbjct: 100 PARNPRRKEPRRQSRATGKSARTRRACASPCRPGRH 135
>gi|197313748 SET domain containing 2 [Homo sapiens]
Length = 2564
Score = 32.7 bits (73), Expect = 0.063
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 12 PGHPHPSPP---AWTLKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPVACPVGCPV 68
P P P PP A TL P+ PVA P PI ++ PV PV V
Sbjct: 187 PSSPPPPPPPAQATTLSSPAPVTE----------PVALP-HTPITVLMAAPVPLPVDVAV 235
Query: 69 GSMATAPQGLSPQEWEADRETGSSSHA 95
S+ P + P+ EAD + + S++
Sbjct: 236 RSLKEPPIIIVPESLEADTKQDTISNS 262
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 32.7 bits (73), Expect = 0.063
Identities = 27/94 (28%), Positives = 33/94 (35%), Gaps = 17/94 (18%)
Query: 4 SSAAGQESPGHPHPSPP-----------------AWTLKKPSESVAQRAMCSARACPVAC 46
++AA P P P PP A PS AQ + RA P+A
Sbjct: 120 AAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAA 179
Query: 47 PVGCPIACPVSCPVACPVGCPVGSMATAPQGLSP 80
P P A P P A P P ++A L P
Sbjct: 180 PPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPP 213
>gi|74272287 matrix metalloproteinase 9 preproprotein [Homo sapiens]
Length = 707
Score = 32.3 bits (72), Expect = 0.082
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 13/66 (19%)
Query: 15 PHPSPPAWTLKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPVACPVGCPVGSMATA 74
P P PP T +P+ A P CP G P P P A P G P + T
Sbjct: 449 PEPRPPTTTTPQPT------------APPTVCPTGPPTVHPSERPTAGPTG-PPSAGPTG 495
Query: 75 PQGLSP 80
P P
Sbjct: 496 PPTAGP 501
>gi|169166294 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 32.3 bits (72), Expect = 0.082
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 18 SPPAWTLKKPSESVAQRAMCSARACPVACP-VGCPIACPVSCPVACPVGCPVGSMATAP- 75
SP K S S A A A A P +G A S P ACP GC A AP
Sbjct: 43 SPRCCRFCKGSVSTATVTSFGASAPGSADPTLGSTAARRASAPWACPAGC---CRANAPA 99
Query: 76 QGLSPQEWEADRETGSSSHAGTTQCSIHSPSSSSRH 111
+P+ E R++ ++ + T+ + SP RH
Sbjct: 100 PARNPRRKEPRRQSRATGKSARTRRACASPCRPGRH 135
>gi|169211819 PREDICTED: keratin associated protein [Homo sapiens]
Length = 517
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 35 AMCSARACPVACPV--GCPIACP--VSCP-VAC-PVGCPVGSMATA 74
A+C + C C V CP CP VSCP +C P+ C GS A+A
Sbjct: 322 AVCVSSPCQPTCYVVKRCPSVCPEPVSCPSTSCRPLSCSPGSSASA 367
>gi|239745811 PREDICTED: hypothetical protein XP_002343557 [Homo
sapiens]
Length = 517
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 35 AMCSARACPVACPV--GCPIACP--VSCP-VAC-PVGCPVGSMATA 74
A+C + C C V CP CP VSCP +C P+ C GS A+A
Sbjct: 322 AVCVSSPCQPTCYVVKRCPSVCPEPVSCPSTSCRPLSCSPGSSASA 367
>gi|145046269 rotatin [Homo sapiens]
Length = 2226
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 68 VGSMATAPQGLSPQEWEADRETGSSSHAG-TTQCSIHSP 105
VG P+G Q+W+A +GSSSHA ++ S+HSP
Sbjct: 316 VGRTGQRPRG-DGQDWDAASSSGSSSHAHVNSRISVHSP 353
>gi|7657685 late cornified envelope 2B [Homo sapiens]
Length = 110
Score = 31.6 bits (70), Expect = 0.14
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGC-PVGSMATAP 75
CP C CP CP C CP C P S P
Sbjct: 16 CPPKCTPKCPPKCPPKCLPQCPAPCSPAVSSCCGP 50
Score = 29.6 bits (65), Expect = 0.53
Identities = 11/25 (44%), Positives = 11/25 (44%)
Query: 43 PVACPVGCPIACPVSCPVACPVGCP 67
P CP C CP CP C CP
Sbjct: 13 PPKCPPKCTPKCPPKCPPKCLPQCP 37
Score = 27.3 bits (59), Expect = 2.6
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 51 PIACPVSCPVACPVGCPVGSMATAPQGLSP 80
P CP C CP CP + P SP
Sbjct: 13 PPKCPPKCTPKCPPKCPPKCLPQCPAPCSP 42
>gi|239757282 PREDICTED: similar to Fc fragment of IgG binding
protein [Homo sapiens]
Length = 1403
Score = 31.2 bits (69), Expect = 0.18
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 42 CPVACPVG-----CPIACPVSCP-VACPVGC 66
CP+ CP C +CPVSCP ++ P GC
Sbjct: 735 CPLQCPAHSHYELCGDSCPVSCPSLSAPEGC 765
Score = 30.0 bits (66), Expect = 0.41
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGC 66
CP +CP P+ P C C GC
Sbjct: 365 CPASCPSPAPLTTPAVCEGPCVEGC 389
Score = 29.3 bits (64), Expect = 0.70
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGCPVGSMATA 74
C CP CP P++ P C C G A
Sbjct: 361 CGPPCPASCPSPAPLTTPAVCEGPCVEGCQCDA 393
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 48 VGCPIACPVS-----CPVACPVGCPVGSMATAP 75
VGC I CP + C CP CP + T P
Sbjct: 346 VGCEITCPENSHYEVCGPPCPASCPSPAPLTTP 378
>gi|239751787 PREDICTED: hypothetical protein XP_002348012 [Homo
sapiens]
Length = 3003
Score = 31.2 bits (69), Expect = 0.18
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 42 CPVACPVG-----CPIACPVSCP-VACPVGC 66
CP+ CP C +CPVSCP ++ P GC
Sbjct: 2335 CPLQCPAHSHYELCGDSCPVSCPSLSAPEGC 2365
Score = 30.0 bits (66), Expect = 0.41
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGC 66
CP +CP P+ P C C GC
Sbjct: 1965 CPASCPSPAPLTTPAVCEGPCVEGC 1989
Score = 29.3 bits (64), Expect = 0.70
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGCPVGSMATA 74
C CP CP P++ P C C G A
Sbjct: 1961 CGPPCPASCPSPAPLTTPAVCEGPCVEGCQCDA 1993
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 47 PVGCPIACPVS-----CPVACPVGCPVGSMATAPQGLS 79
P CP++CP + C ACP C + A AP S
Sbjct: 738 PANCPLSCPANSRYELCGPACPTSC---NGAAAPSNCS 772
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 48 VGCPIACPVS-----CPVACPVGCPVGSMATAP 75
VGC I CP + C CP CP + T P
Sbjct: 1946 VGCEITCPENSHYEVCGPPCPASCPSPAPLTTP 1978
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 14/43 (32%)
Query: 38 SARACPVACP---------VGCPIAC-----PVSCPVACPVGC 66
S CP++CP GCP++C P C C GC
Sbjct: 1128 SEELCPLSCPPHSHYEACSYGCPLSCGDLPVPGGCGSECHEGC 1170
>gi|239741939 PREDICTED: hypothetical protein XP_002342358 [Homo
sapiens]
Length = 389
Score = 31.2 bits (69), Expect = 0.18
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 24 LKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPVACPVGCPVGSMATAPQG---LSP 80
LK+ + + + C+ P G P A P SC ++ P PV S P SP
Sbjct: 196 LKRQHQLPPRVSSCTTLKPEHQLPPGSPAAWPSSCNISSP---PVSSCTPQPSNWNISSP 252
Query: 81 QEWEA-DRETGSSSHAGTTQCSIHSPSS 107
Q + D +TG+S+ G+ SP+S
Sbjct: 253 QGLQLHDPQTGTSAPPGSPALLPGSPAS 280
>gi|30387654 late cornified envelope 1A [Homo sapiens]
Length = 110
Score = 31.2 bits (69), Expect = 0.18
Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 43 PVACPVGCPIACPV-SCPVACPVGC-PVGSMATAPQGLSPQEWEADRETGSSSHAGTTQC 100
P C CP CP CP CP C PV S + G + G SS G
Sbjct: 13 PPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGC---CGSSSGGGCSSGGGGCCL 69
Query: 101 SIHSPSSSSRH 111
S H S RH
Sbjct: 70 SHHRRHRSHRH 80
>gi|154146262 Fc fragment of IgG binding protein [Homo sapiens]
Length = 5405
Score = 31.2 bits (69), Expect = 0.18
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 42 CPVACPVG-----CPIACPVSCP-VACPVGC 66
CP+ CP C +CPVSCP ++ P GC
Sbjct: 4735 CPLQCPAHSHYELCGDSCPVSCPSLSAPEGC 4765
Score = 30.0 bits (66), Expect = 0.41
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGC 66
CP +CP P+ P C C GC
Sbjct: 1963 CPASCPSPAPLTTPAVCEGPCVEGC 1987
Score = 30.0 bits (66), Expect = 0.41
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGC 66
CP +CP P+ P C C GC
Sbjct: 3164 CPASCPSPAPLTTPAVCEGPCVEGC 3188
Score = 30.0 bits (66), Expect = 0.41
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGC 66
CP +CP P+ P C C GC
Sbjct: 4365 CPASCPSPAPLTTPAVCEGPCVEGC 4389
Score = 29.3 bits (64), Expect = 0.70
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGCPVGSMATA 74
C CP CP P++ P C C G A
Sbjct: 1959 CGSPCPASCPSPAPLTTPAVCEGPCVEGCQCDA 1991
Score = 29.3 bits (64), Expect = 0.70
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGCPVGSMATA 74
C CP CP P++ P C C G A
Sbjct: 3160 CGPPCPASCPSPAPLTTPAVCEGPCVEGCQCDA 3192
Score = 29.3 bits (64), Expect = 0.70
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 42 CPVACPVGCPIACPVSCPVACPVGCPVGSMATA 74
C CP CP P++ P C C G A
Sbjct: 4361 CGPPCPASCPSPAPLTTPAVCEGPCVEGCQCDA 4393
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 47 PVGCPIACPVS-----CPVACPVGCPVGSMATAPQGLS 79
P CP++CP + C ACP C + A AP S
Sbjct: 738 PANCPLSCPANSRYELCGPACPTSC---NGAAAPSNCS 772
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 48 VGCPIACPVS-----CPVACPVGCPVGSMATAP 75
VGC I CP + C CP CP + T P
Sbjct: 1944 VGCEITCPENSHYEVCGSPCPASCPSPAPLTTP 1976
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 48 VGCPIACPVS-----CPVACPVGCPVGSMATAP 75
VGC I CP + C CP CP + T P
Sbjct: 3145 VGCEITCPENSHYEVCGPPCPASCPSPAPLTTP 3177
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 48 VGCPIACPVS-----CPVACPVGCPVGSMATAP 75
VGC I CP + C CP CP + T P
Sbjct: 4346 VGCEITCPENSHYEVCGPPCPASCPSPAPLTTP 4378
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 42 CPVACPVGCP-IACPVSCPVACPVGCPVGS 70
C C +GC ++ P+ CP C GC S
Sbjct: 2742 CADTCSLGCSALSAPLQCPDGCAEGCQCDS 2771
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 42 CPVACPVGCP-IACPVSCPVACPVGCPVGS 70
C C +GC ++ P+ CP C GC S
Sbjct: 3943 CADTCSLGCSALSAPLQCPDGCAEGCQCDS 3972
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 14/43 (32%)
Query: 38 SARACPVACP---------VGCPIAC-----PVSCPVACPVGC 66
S CP++CP GCP++C P C C GC
Sbjct: 1128 SEELCPLSCPPHSHYEACSYGCPLSCGDLPVPGGCGSECHEGC 1170
Score = 26.2 bits (56), Expect = 5.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 37 CSARACPVACPVGCPIAC 54
CSA + P+ CP GC C
Sbjct: 2750 CSALSAPLQCPDGCAEGC 2767
Score = 26.2 bits (56), Expect = 5.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 37 CSARACPVACPVGCPIAC 54
CSA + P+ CP GC C
Sbjct: 3951 CSALSAPLQCPDGCAEGC 3968
>gi|158508572 nuclear receptor subfamily 3, group C, member 2 [Homo
sapiens]
Length = 984
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 29 ESVAQRAMCSARACPVACPVGCPIACPVSCPVACPVGCPVGSMATAPQGLSPQEWEADRE 88
E+ R+ A A V P+ P++ S + P C V S ++P ++ +
Sbjct: 242 ENRGSRSHSPAHASNVGSPLSSPLSSMKSSISSPPSHCSVKSPVSSPNNVTLRS-----S 296
Query: 89 TGSSSHAGTTQCSIHSPSSSS 109
S ++ ++CS+ SPS+++
Sbjct: 297 VSSPANINNSRCSVSSPSNTN 317
>gi|153791535 general control of amino acid synthesis 5-like 2
[Homo sapiens]
Length = 837
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 17 PSPPAWTLKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPVACPVGCPVGSMATAPQ 76
P+P +P +S A + P P PI P P P P GS T
Sbjct: 8 PTPAPAAQPRPLQSPAP----APTPTPAPSPASAPIPTPTPAPAPAPAAAPAGSTGTGGP 63
Query: 77 GL 78
G+
Sbjct: 64 GV 65
>gi|238859649 keratin associated protein 10-8 [Homo sapiens]
Length = 259
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 21 AWTLKKPSESVAQRAMCSARACPVACPVGCP----IACPVSC-PVACPVGC 66
+W + ES + C++ C +C P + PVSC P C GC
Sbjct: 40 SWQVDNCQESCCEPRSCASSCCTPSCCAPAPCLALVCAPVSCEPSPCQSGC 90
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 30.4 bits (67), Expect = 0.31
Identities = 19/64 (29%), Positives = 26/64 (40%)
Query: 17 PSPPAWTLKKPSESVAQRAMCSARACPVACPVGCPIACPVSCPVACPVGCPVGSMATAPQ 76
PSPPA P + + +A + + P P + PV P + P PV AT P
Sbjct: 409 PSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPS 468
Query: 77 GLSP 80
P
Sbjct: 469 QAPP 472
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 10 ESPGHPHPSPPAWTLKKPS----ESVAQRAMCSARACPVACPVGCPIACPVSCPV---AC 62
++P P SPP L PS ++A + + + P + PV P + P S PV A
Sbjct: 406 QAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSAT 465
Query: 63 PVGCPVGSMATAPQGLSP 80
P S+A P + P
Sbjct: 466 PPSQAPPSLAAPPLQVPP 483
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.123 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,155,578
Number of Sequences: 37866
Number of extensions: 322331
Number of successful extensions: 1766
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 324
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.