Guide to the Human Genome
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Name: TMEM160 Sequence: fasta or formatted (188aa) NCBI GI: 8923477
Description:

transmembrane protein 160

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.0         30           2
 C cysteine            1.1          2           1
 D aspartate           3.7          7           2
 E glutamate           4.8          9           1
 F phenylalanine       3.7          7           2
 G glycine            14.9         28           3
 H histidine           1.1          2           1
 I isoleucine          1.1          2           1
 K lysine              0.5          1           1
 L leucine            12.8         24           2
 M methionine          2.7          5           1
 N asparagine          0.5          1           1
 P proline             7.4         14           3
 Q glutamine           2.1          4           1
 R arginine            8.5         16           2
 S serine              6.9         13           1
 T threonine           1.6          3           1
 V valine              5.3         10           2
 W tryptophan          3.7          7           3
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 160 
LOC100132234          0.022   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.022   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.022   PREDICTED: hypothetical protein LOC100132234 
SEC24D                0.022   Sec24-related protein D 
SPTBN4                0.022   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
LOC100291654          0.019   PREDICTED: hypothetical protein XP_002345781 
LOC100288108          0.019   PREDICTED: hypothetical protein 
LOC100290719          0.019   PREDICTED: hypothetical protein XP_002346638 
LOC100288108          0.019   PREDICTED: hypothetical protein XP_002342919 
LOC100289434          0.019   PREDICTED: hypothetical protein XP_002342462 
ZFP91                 0.019   zinc finger protein 91 
LOC100287063          0.017   PREDICTED: hypothetical protein 
LOC100287063          0.017   PREDICTED: hypothetical protein XP_002342368 
SGIP1                 0.017   SH3-domain GRB2-like (endophilin) interacting prote...
SMPD2                 0.014   sphingomyelin phosphodiesterase 2, neutral 
DBX1                  0.014   developing brain homeobox 1 
SMAD6                 0.011   SMAD family member 6 isoform 1 
REXO2                 0.011   small fragment nuclease 
BRSK1                 0.011   BR serine/threonine kinase 1 
CUX1                  0.011   cut-like homeobox 1 isoform a 
LOC100130431          0.011   PREDICTED: hypothetical protein 
LOC100130431          0.011   PREDICTED: hypothetical protein 
LOC100290265          0.011   PREDICTED: hypothetical protein XP_002346787 
LOC100130431          0.011   PREDICTED: hypothetical protein 
YBX2                  0.011   Y box binding protein 2 
EYA4                  0.011   eyes absent 4 isoform d 
EYA4                  0.011   eyes absent 4 isoform b 
EYA4                  0.011   eyes absent 4 isoform a 
MBOAT4                0.011   membrane bound O-acyltransferase domain containing ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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