Search of human proteins with 14150147

Search of human proteins with 14150147

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14150147 syndesmos [Homo sapiens]
         (211 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14150147 syndesmos [Homo sapiens]                                  421   e-118
gi|24308370 nudix-type motif 16 [Homo sapiens]                        172   2e-43
gi|11141887 brain link protein-1 [Homo sapiens]                        27   9.7  

>gi|14150147 syndesmos [Homo sapiens]
          Length = 211

 Score =  421 bits (1082), Expect = e-118
 Identities = 211/211 (100%), Positives = 211/211 (100%)

Query: 1   MSTAAVPELKQISRVEAMRLGPGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLL 60
           MSTAAVPELKQISRVEAMRLGPGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLL
Sbjct: 1   MSTAAVPELKQISRVEAMRLGPGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLL 60

Query: 61  GFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTLE 120
           GFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTLE
Sbjct: 61  GFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTLE 120

Query: 121 QLHAVEISAVHSRDHGLEVLGLVRVPLYTQKDRVGGFPNFLSNAFVSTAKCQLLFALKVL 180
           QLHAVEISAVHSRDHGLEVLGLVRVPLYTQKDRVGGFPNFLSNAFVSTAKCQLLFALKVL
Sbjct: 121 QLHAVEISAVHSRDHGLEVLGLVRVPLYTQKDRVGGFPNFLSNAFVSTAKCQLLFALKVL 180

Query: 181 NMMPEEKLVEALAAATEKQKKALEKLLPASS 211
           NMMPEEKLVEALAAATEKQKKALEKLLPASS
Sbjct: 181 NMMPEEKLVEALAAATEKQKKALEKLLPASS 211


>gi|24308370 nudix-type motif 16 [Homo sapiens]
          Length = 162

 Score =  172 bits (435), Expect = 2e-43
 Identities = 91/148 (61%), Positives = 111/148 (75%), Gaps = 5/148 (3%)

Query: 40  LFGRIPMRFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLG----CLRLTEAD 95
           LFGRIP+R+++LMQMRFDG LGFPGGFVD +  SLEDGLNR L   LG      R+   D
Sbjct: 2   LFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTD 61

Query: 96  YLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGLVRVPLYTQKDRVG 155
           Y SSH+  GP RVVAH YA++LTLE+L AVE  A  ++DHGLEVLGLVRVPLYT +D VG
Sbjct: 62  YRSSHVGSGP-RVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVG 120

Query: 156 GFPNFLSNAFVSTAKCQLLFALKVLNMM 183
           G P FL N+F+ +A+ QLL AL+ L ++
Sbjct: 121 GLPTFLENSFIGSAREQLLEALQDLGLL 148


>gi|11141887 brain link protein-1 [Homo sapiens]
          Length = 340

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 9/51 (17%)

Query: 109 VAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGLVRVPLYTQKDRVGGFPN 159
           V HLYA         A + S +   D G    G VR P+ T + R GG P+
Sbjct: 275 VGHLYA---------AWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPD 316


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,714,655
Number of Sequences: 37866
Number of extensions: 321104
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 3
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.